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Volumn 288, Issue 36, 2013, Pages 25826-25837

Structure and activity of the peptidyl-prolyl isomerase domain from the histone chaperone Fpr4 toward histone H3 proline isomerization

Author keywords

[No Author keywords available]

Indexed keywords

CATALYTIC EFFICIENCIES; FK506-BINDING PROTEINS; HISTONE H3; ISOMERASE ACTIVITY; PEPTIDYL-PROLYL ISOMERASE; PROLINE ISOMERIZATION; STRUCTURE AND ACTIVITIES; SUBSTRATE PEPTIDES;

EID: 84883719624     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M113.479964     Document Type: Article
Times cited : (16)

References (55)
  • 1
    • 0023236959 scopus 로고
    • Catalysis of protein folding by prolyl isomerase
    • Lang, K., Schmid, F. X., and Fischer, G. (1987) Catalysis of protein folding by prolyl isomerase. Nature 329, 268-270
    • (1987) Nature , vol.329 , pp. 268-270
    • Lang, K.1    Schmid, F.X.2    Fischer, G.3
  • 2
    • 0025311245 scopus 로고
    • Replacement of a cis proline simplifies the mechanism of ribonuclease T1 folding
    • Kiefhaber, T., Grunert, H. P., Hahn, U., and Schmid, F. X. (1990) Replacement of a cis proline simplifies the mechanism of ribonuclease T1 folding. Biochemistry 29, 6475-6480
    • (1990) Biochemistry , vol.29 , pp. 6475-6480
    • Kiefhaber, T.1    Grunert, H.P.2    Hahn, U.3    Schmid, F.X.4
  • 4
    • 78650486391 scopus 로고    scopus 로고
    • Structural basis for regulation of the Crk signaling protein by a proline switch
    • Sarkar, P., Saleh, T., Tzeng, S. R., Birge, R. B., and Kalodimos, C. G. (2011) Structural basis for regulation of the Crk signaling protein by a proline switch. Nat. Chem. Biol. 7, 51-57
    • (2011) Nat. Chem. Biol. , vol.7 , pp. 51-57
    • Sarkar, P.1    Saleh, T.2    Tzeng, S.R.3    Birge, R.B.4    Kalodimos, C.G.5
  • 5
    • 0032926319 scopus 로고    scopus 로고
    • Peptidyl-prolyl cis-trans isomerases, a superfamily of ubiquitous folding catalysts
    • Göthel, S. F., and Marahiel, M. A. (1999) Peptidyl-prolyl cis-trans isomerases, a superfamily of ubiquitous folding catalysts. Cell. Mol. Life Sci. 55, 423-436
    • (1999) Cell. Mol. Life Sci. , vol.55 , pp. 423-436
    • Göthel, S.F.1    Marahiel, M.A.2
  • 6
    • 28444439801 scopus 로고    scopus 로고
    • Insights into the catalytic mechanism of peptidyl prolyl cis/trans isomerases
    • Fanghänel, J., and Fischer, G. (2004) Insights into the catalytic mechanism of peptidyl prolyl cis/trans isomerases. Front. Biosci. 9, 3453-3478
    • (2004) Front. Biosci. , vol.9 , pp. 3453-3478
    • Fanghänel, J.1    Fischer, G.2
  • 7
    • 0024472603 scopus 로고
    • A receptor for the immunosuppressant FK506 is a cis-trans peptidyl-prolyl isomerase
    • Harding, M. W., Galat, A., Uehling, D. E., and Schreiber, S. L. (1989) A receptor for the immunosuppressant FK506 is a cis-trans peptidyl-prolyl isomerase. Nature 341, 758-760
    • (1989) Nature , vol.341 , pp. 758-760
    • Harding, M.W.1    Galat, A.2    Uehling, D.E.3    Schreiber, S.L.4
  • 8
    • 0024442393 scopus 로고
    • A cytosolic binding protein for the immunosuppressant FK506 has peptidylprolyl isomerase activity but is distinct from cyclophilin
    • Siekierka, J. J., Hung, S. H., Poe, M., Lin, C. S., and Sigal, N. H. (1989) A cytosolic binding protein for the immunosuppressant FK506 has peptidylprolyl isomerase activity but is distinct from cyclophilin. Nature 341, 755-757
    • (1989) Nature , vol.341 , pp. 755-757
    • Siekierka, J.J.1    Hung, S.H.2    Poe, M.3    Lin, C.S.4    Sigal, N.H.5
  • 9
    • 0026092585 scopus 로고
    • Rapamycin sensitivity in Saccharomyces cerevisiae is mediated by a peptidyl-prolyl cis-trans isomerase related to human FK506-binding protein
    • Koltin, Y., Faucette, L., Bergsma, D. J., Levy, M. A., Cafferkey, R., Koser, P. L., Johnson, R. K., and Livi, G. P. (1991) Rapamycin sensitivity in Saccharomyces cerevisiae is mediated by a peptidyl-prolyl cis-trans isomerase related to human FK506-binding protein. Mol. Cell. Biol. 11, 1718 -1723
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 1718-1723
    • Koltin, Y.1    Faucette, L.2    Bergsma, D.J.3    Levy, M.A.4    Cafferkey, R.5    Koser, P.L.6    Johnson, R.K.7    Livi, G.P.8
  • 11
    • 1442286922 scopus 로고    scopus 로고
    • A nuclear FK506-binding protein is a histone chaperone regulating rDNA silencing
    • Kuzuhara, T., and Horikoshi, M. (2004) A nuclear FK506-binding protein is a histone chaperone regulating rDNA silencing. Nat. Struct. Mol. Biol. 11, 275-283
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 275-283
    • Kuzuhara, T.1    Horikoshi, M.2
  • 12
    • 33746344330 scopus 로고    scopus 로고
    • The FK506-binding protein, Fpr4, is an acidic histone chaperone
    • Xiao, H., Jackson, V., and Lei, M. (2006) The FK506-binding protein, Fpr4, is an acidic histone chaperone. FEBS Lett. 580, 4357-4364
    • (2006) FEBS Lett. , vol.580 , pp. 4357-4364
    • Xiao, H.1    Jackson, V.2    Lei, M.3
  • 13
    • 33748163064 scopus 로고    scopus 로고
    • Proline isomerization of histone H3 regulates lysine methylation and gene expression
    • Nelson, C. J., Santos-Rosa, H., and Kouzarides, T. (2006) Proline isomerization of histone H3 regulates lysine methylation and gene expression. Cell 126, 905-916
    • (2006) Cell , vol.126 , pp. 905-916
    • Nelson, C.J.1    Santos-Rosa, H.2    Kouzarides, T.3
  • 17
    • 84873170156 scopus 로고    scopus 로고
    • Chemical shift assignments of the catalytic domain from the yeast proline isomerase Fpr4p
    • Monneau, Y. R., Nelson, C. J., and Mackereth, C. D. (2012) Chemical shift assignments of the catalytic domain from the yeast proline isomerase Fpr4p. Biomol. NMR Assign. 6, 123-126
    • (2012) Biomol. NMR Assign. , vol.6 , pp. 123-126
    • Monneau, Y.R.1    Nelson, C.J.2    Mackereth, C.D.3
  • 18
    • 0029400480 scopus 로고
    • NMRPipe. A multidimensional spectral processing system based on UNIX pipes
    • Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe. A multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293
    • (1995) J. Biomol. NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.W.3    Zhu, G.4    Pfeifer, J.5    Bax, A.6
  • 19
    • 0037551646 scopus 로고    scopus 로고
    • Alignment of biological macromolecules in novel nonionic liquid crystalline media for NMR experiments
    • Rückert, M., and Otting, G. (2000) Alignment of biological macromolecules in novel nonionic liquid crystalline media for NMR experiments. J. Am. Chem. Soc. 122, 7793-7797
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 7793-7797
    • Rückert, M.1    Otting, G.2
  • 21
    • 0028907436 scopus 로고
    • Calculation of protein structures with ambiguous distance restraints. Automated assignment of ambiguous NOE crosspeaks and disulphide connectivities
    • Nilges, M. (1995) Calculation of protein structures with ambiguous distance restraints. Automated assignment of ambiguous NOE crosspeaks and disulphide connectivities. J. Mol. Biol. 245, 645-660
    • (1995) J. Mol. Biol. , vol.245 , pp. 645-660
    • Nilges, M.1
  • 22
    • 68349093958 scopus 로고    scopus 로고
    • TALOS. A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts
    • Shen, Y., Delaglio, F., Cornilescu, G., and Bax, A. (2009) TALOS. A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J. Biomol. NMR 44, 213-223
    • (2009) J. Biomol. NMR , vol.44 , pp. 213-223
    • Shen, Y.1    Delaglio, F.2    Cornilescu, G.3    Bax, A.4
  • 23
    • 72449187567 scopus 로고    scopus 로고
    • DANGLE. A Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure
    • Cheung, M. S., Maguire, M. L., Stevens, T. J., and Broadhurst, R. W. (2010) DANGLE. A Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure. J. Magn. Reson. 202, 223-233
    • (2010) J. Magn. Reson. , vol.202 , pp. 223-233
    • Cheung, M.S.1    Maguire, M.L.2    Stevens, T.J.3    Broadhurst, R.W.4
  • 24
    • 70349558318 scopus 로고    scopus 로고
    • Leucine side-chain conformation and dynamics in proteins from 13CNMRchemical shifts
    • Mulder, F. A. (2009) Leucine side-chain conformation and dynamics in proteins from 13CNMRchemical shifts. ChemBioChem 10, 1477-1479
    • (2009) ChemBioChem , vol.10 , pp. 1477-1479
    • Mulder, F.A.1
  • 25
    • 0343359244 scopus 로고
    • Investigation of exchange processes by two-dimensional NMR spectroscopy
    • Jeener, J., Meier, B. H., Bachmann, P., and Ernst, R. R. (1979) Investigation of exchange processes by two-dimensional NMR spectroscopy. J. Chem. Phys. 71, 4546-4553
    • (1979) J. Chem. Phys. , vol.71 , pp. 4546-4553
    • Jeener, J.1    Meier, B.H.2    Bachmann, P.3    Ernst, R.R.4
  • 27
    • 0025826966 scopus 로고
    • Solution structure of FKBP, a rotamase enzyme and receptor for FK506 and rapamycin
    • Michnick, S. W., Rosen, M. K., Wandless, T. J., Karplus, M., and Schreiber, S. L. (1991) Solution structure of FKBP, a rotamase enzyme and receptor for FK506 and rapamycin. Science 252, 836-839
    • (1991) Science , vol.252 , pp. 836-839
    • Michnick, S.W.1    Rosen, M.K.2    Wandless, T.J.3    Karplus, M.4    Schreiber, S.L.5
  • 28
    • 0025728258 scopus 로고
    • Solution structure of the major binding protein for the immunosuppressant FK506
    • Moore, J. M., Peattie, D. A., Fitzgibbon, M. J., and Thomson, J. A. (1991) Solution structure of the major binding protein for the immunosuppressant FK506. Nature 351, 248-250
    • (1991) Nature , vol.351 , pp. 248-250
    • Moore, J.M.1    Peattie, D.A.2    Fitzgibbon, M.J.3    Thomson, J.A.4
  • 29
    • 0025826967 scopus 로고
    • Atomic structure of FKBP-FK506, an immunophilinimmunosuppressant complex
    • Van Duyne, G. D., Standaert, R. F., Karplus, P. A., Schreiber, S. L., and Clardy, J. (1991) Atomic structure of FKBP-FK506, an immunophilinimmunosuppressant complex. Science 252, 839-842
    • (1991) Science , vol.252 , pp. 839-842
    • Van Duyne, G.D.1    Standaert, R.F.2    Karplus, P.A.3    Schreiber, S.L.4    Clardy, J.5
  • 30
    • 0027439390 scopus 로고
    • Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin
    • Van Duyne, G. D., Standaert, R. F., Karplus, P. A., Schreiber, S. L., and Clardy, J. (1993) Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin. J. Mol. Biol. 229, 105-124
    • (1993) J. Mol. Biol. , vol.229 , pp. 105-124
    • Van Duyne, G.D.1    Standaert, R.F.2    Karplus, P.A.3    Schreiber, S.L.4    Clardy, J.5
  • 32
    • 0027171850 scopus 로고
    • Structural studies of complexed FK-506 binding protein
    • Clardy, J. (1993) Structural studies of complexed FK-506 binding protein. Ann. N.Y. Acad. Sci. 685, 37-45
    • (1993) Ann. N.Y. Acad. Sci. , vol.685 , pp. 37-45
    • Clardy, J.1
  • 33
    • 84875481785 scopus 로고    scopus 로고
    • Structural insights into substrate binding by PvFKBP35, a peptidylprolyl cis-trans isomerase from the human malarial parasite Plasmodium vivax
    • Alag, R., Balakrishna, A. M., Rajan, S., Qureshi, I. A., Shin, J., Lescar, J., Gruber, G., and Yoon, H. S. (2013) Structural insights into substrate binding by PvFKBP35, a peptidylprolyl cis-trans isomerase from the human malarial parasite Plasmodium vivax. Eukaryot. Cell 12, 627- 634
    • (2013) Eukaryot. Cell , vol.12 , pp. 627-634
    • Alag, R.1    Balakrishna, A.M.2    Rajan, S.3    Qureshi, I.A.4    Shin, J.5    Lescar, J.6    Gruber, G.7    Yoon, H.S.8
  • 36
    • 0025299887 scopus 로고
    • Occurrence and role of cis peptide bonds in protein structures
    • Stewart, D. E., Sarkar, A., and Wampler, J. E. (1990) Occurrence and role of cis peptide bonds in protein structures. J. Mol. Biol. 214, 253-260
    • (1990) J. Mol. Biol. , vol.214 , pp. 253-260
    • Stewart, D.E.1    Sarkar, A.2    Wampler, J.E.3
  • 37
    • 0025890946 scopus 로고
    • Influence of proline residues on protein conformation
    • MacArthur, M. W., and Thornton, J. M. (1991) Influence of proline residues on protein conformation. J. Mol. Biol. 218, 397-412
    • (1991) J. Mol. Biol. , vol.218 , pp. 397-412
    • Macarthur, M.W.1    Thornton, J.M.2
  • 41
    • 0021689983 scopus 로고
    • Conformational specificity of chymotrypsin toward proline-containing substrates
    • Fischer, G., Bang, H., Berger, E., and Schellenberger, A. (1984) Conformational specificity of chymotrypsin toward proline-containing substrates. Biochim. Biophys. Acta 791, 87-97
    • (1984) Biochim. Biophys. Acta , vol.791 , pp. 87-97
    • Fischer, G.1    Bang, H.2    Berger, E.3    Schellenberger, A.4
  • 43
    • 80755168127 scopus 로고    scopus 로고
    • Complete determination of the Pin1 catalytic domain thermodynamic cycle by NMR lineshape analysis
    • Greenwood, A. I., Rogals, M. J., De, S., Lu, K. P., Kovrigin, E. L., and Nicholson, L. K. (2011) Complete determination of the Pin1 catalytic domain thermodynamic cycle by NMR lineshape analysis. J. Biomol. NMR 51, 21-34
    • (2011) J. Biomol. NMR , vol.51 , pp. 21-34
    • Greenwood, A.I.1    Rogals, M.J.2    De, S.3    Lu, K.P.4    Kovrigin, E.L.5    Nicholson, L.K.6
  • 44
    • 70349093561 scopus 로고    scopus 로고
    • Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes
    • Clore, G. M., and Iwahara, J. (2009) Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes. Chem. Rev. 109, 4108-4139
    • (2009) Chem. Rev. , vol.109 , pp. 4108-4139
    • Clore, G.M.1    Iwahara, J.2
  • 45
    • 0032230312 scopus 로고    scopus 로고
    • Analysis of FKBP51/FKBP52 chimeras and mutants for Hsp90 binding and association with progesterone receptor complexes
    • Barent, R. L., Nair, S. C., Carr, D. C., Ruan, Y., Rimerman, R. A., Fulton, J., Zhang, Y., and Smith, D. F. (1998) Analysis of FKBP51/FKBP52 chimeras and mutants for Hsp90 binding and association with progesterone receptor complexes. Mol. Endocrinol. 12, 342-354
    • (1998) Mol. Endocrinol. , vol.12 , pp. 342-354
    • Barent, R.L.1    Nair, S.C.2    Carr, D.C.3    Ruan, Y.4    Rimerman, R.A.5    Fulton, J.6    Zhang, Y.7    Smith, D.F.8
  • 46
    • 0037449135 scopus 로고    scopus 로고
    • Three-dimensional solution structure of an archaeal FKBP with a dual function of peptidyl prolyl cis-trans isomerase and chaperone-like activities
    • Suzuki, R., Nagata, K., Yumoto, F., Kawakami, M., Nemoto, N., Furutani, M., Adachi, K., Maruyama, T., and Tanokura, M. (2003) Three-dimensional solution structure of an archaeal FKBP with a dual function of peptidyl prolyl cis-trans isomerase and chaperone-like activities. J. Mol. Biol. 328, 1149-1160
    • (2003) J. Mol. Biol. , vol.328 , pp. 1149-1160
    • Suzuki, R.1    Nagata, K.2    Yumoto, F.3    Kawakami, M.4    Nemoto, N.5    Furutani, M.6    Adachi, K.7    Maruyama, T.8    Tanokura, M.9
  • 47
    • 34247202118 scopus 로고    scopus 로고
    • Insertion of a chaperone domain converts FKBP12 into a powerful catalyst of protein folding
    • Knappe, T. A., Eckert, B., Schaarschmidt, P., Scholz, C., and Schmid, F. X. (2007) Insertion of a chaperone domain converts FKBP12 into a powerful catalyst of protein folding. J. Mol. Biol. 368, 1458-1468
    • (2007) J. Mol. Biol. , vol.368 , pp. 1458-1468
    • Knappe, T.A.1    Eckert, B.2    Schaarschmidt, P.3    Scholz, C.4    Schmid, F.X.5
  • 48
    • 84862224971 scopus 로고    scopus 로고
    • Combination of the human prolyl isomerase FKBP12 with unrelated chaperone domains leads to chimeric folding enzymes with high activity
    • Geitner, A. J., and Schmid, F. X. (2012) Combination of the human prolyl isomerase FKBP12 with unrelated chaperone domains leads to chimeric folding enzymes with high activity. J. Mol. Biol. 420, 335-349
    • (2012) J. Mol. Biol. , vol.420 , pp. 335-349
    • Geitner, A.J.1    Schmid, F.X.2
  • 49
    • 77949274579 scopus 로고    scopus 로고
    • AtFKBP53 is a histone chaperone required for repression of ribosomal RNA gene expression in Arabidopsis
    • Li, H., and Luan, S. (2010) AtFKBP53 is a histone chaperone required for repression of ribosomal RNA gene expression in Arabidopsis. Cell Res. 20, 357-366
    • (2010) Cell Res. , vol.20 , pp. 357-366
    • Li, H.1    Luan, S.2
  • 53
    • 84878325365 scopus 로고    scopus 로고
    • Resolving functions of peptidylproline isomerases. Insights from the mutagenesis of the nuclear FKBP25 enzyme
    • Gudavicius, G., Soufari, H., Upadhyay, S. K., Mackereth, C. D., and Nelson, C. J. (2013) Resolving functions of peptidylproline isomerases. Insights from the mutagenesis of the nuclear FKBP25 enzyme. Biochem. Soc. Trans. 41, 761-768
    • (2013) Biochem. Soc. Trans. , vol.41 , pp. 761-768
    • Gudavicius, G.1    Soufari, H.2    Upadhyay, S.K.3    Mackereth, C.D.4    Nelson, C.J.5
  • 54
    • 0032528033 scopus 로고    scopus 로고
    • Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase
    • Cornilescu, G., Marquardt, J. L., Ottiger, M., and Bax, A. (1998) Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase. J. Am. Chem. Soc. 120, 6836-6837
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 6836-6837
    • Cornilescu, G.1    Marquardt, J.L.2    Ottiger, M.3    Bax, A.4
  • 55
    • 0030339738 scopus 로고    scopus 로고
    • AQUA and PROCHECK-NMR. Programs for checking the quality of protein structures by NMR
    • Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) AQUA and PROCHECK-NMR. Programs for checking the quality of protein structures by NMR. J. Biomol. NMR 8, 477-486
    • (1996) J. Biomol. NMR , vol.8 , pp. 477-486
    • Laskowski, R.A.1    Rullmannn, J.A.2    Macarthur, M.W.3    Kaptein, R.4    Thornton, J.M.5


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