-
1
-
-
79952505553
-
Human genome 10th anniversary. Digging deep into the microbiome
-
10.1126/science.331.6020.1008 21350145
-
Human genome 10th anniversary. Digging deep into the microbiome. Pennisi E, Science 2011 331 6020 1008 1009 10.1126/science.331.6020.1008 21350145
-
(2011)
Science
, vol.331
, Issue.6020
, pp. 1008-1009
-
-
Pennisi, E.1
-
2
-
-
56749168880
-
Genetic relationships between respiratory pathogens isolated from dental plaque and bronchoalveolar lavage fluid from patients in the intensive care unit undergoing mechanical ventilation
-
10.1086/593193 18991508
-
Genetic relationships between respiratory pathogens isolated from dental plaque and bronchoalveolar lavage fluid from patients in the intensive care unit undergoing mechanical ventilation. Heo S-M, Haase EM, Lesse AJ, Gill SR, Scannapieco FA, Clin Infect Dis 2008 47 12 1562 1570 10.1086/593193 18991508
-
(2008)
Clin Infect Dis
, vol.47
, Issue.12
, pp. 1562-1570
-
-
Heo, S.-M.1
Haase, E.M.2
Lesse, A.J.3
Gill, S.R.4
Scannapieco, F.A.5
-
3
-
-
35348968286
-
The Human Microbiome Project
-
DOI 10.1038/nature06244, PII NATURE06244
-
The human microbiome project. Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI, Nature 2007 449 7164 804 810 10.1038/nature06244 17943116 (Pubitemid 47598620)
-
(2007)
Nature
, vol.449
, Issue.7164
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
4
-
-
79953026036
-
BIPES, a cost-effective high-throughput method for assessing microbial diversity
-
10.1038/ismej.2010.160 20962877
-
BIPES, a cost-effective high-throughput method for assessing microbial diversity. Zhou HW, Li DF, Tam NF, Jiang XT, Zhang H, Sheng HF, Qin J, Liu X, Zou F, ISME J 2011 5 4 741 749 10.1038/ismej.2010.160 20962877
-
(2011)
ISME J
, vol.5
, Issue.4
, pp. 741-749
-
-
Zhou, H.W.1
Li, D.F.2
Tam, N.F.3
Jiang, X.T.4
Zhang, H.5
Sheng, H.F.6
Qin, J.7
Liu, X.8
Zou, F.9
-
5
-
-
83755185513
-
Experimental and analytical tools for studying the human microbiome
-
Experimental and analytical tools for studying the human microbiome. Kuczynski J, Lauber CL, Walters WA, Parfrey LW, Clemente JC, Gevers D, Knight R, Nat Rev Genet 2012 13 1 47 58
-
(2012)
Nat Rev Genet
, vol.13
, Issue.1
, pp. 47-58
-
-
Kuczynski, J.1
Lauber, C.L.2
Walters, W.A.3
Parfrey, L.W.4
Clemente, J.C.5
Gevers, D.6
Knight, R.7
-
6
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
DOI 10.1073/pnas.0605127103
-
Microbial diversity in the deep sea and the underexplored "rare biosphere" Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR, Arrieta JM, Herndl GJ, Proc Natl Acad Sci USA 2006 103 12115 12120 10.1073/pnas.0605127103 16880384 (Pubitemid 44215820)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.32
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
7
-
-
57149093416
-
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
-
10.1371/journal.pgen.1000255 19023400
-
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Relman DA, Sogin ML, PLoS Genet 2008 4 11 1000255 10.1371/journal.pgen.1000255 19023400
-
(2008)
PLoS Genet
, vol.4
, Issue.11
, pp. 51000255
-
-
Huse, S.M.1
Dethlefsen, L.2
Huber, J.A.3
Mark Welch, D.4
Relman, D.A.5
Sogin, M.L.6
-
8
-
-
72949091232
-
Bacterial community variation in human body habitats across space and time
-
Bacterial community variation in human body habitats across space and time. Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R, Science 2009 326 1177486
-
(2009)
Science
, vol.326
, pp. 1177486
-
-
Costello, E.K.1
Lauber, C.L.2
Hamady, M.3
Fierer, N.4
Gordon, J.I.5
Knight, R.6
-
9
-
-
84862192626
-
Evaluation of 16S rDNA-based community profiling for human microbiome research
-
Jumpstart Consortium Human Microbiome Project Data Generation Working Group 10.1371/journal.pone.0039315 22720093
-
Evaluation of 16S rDNA-based community profiling for human microbiome research. Jumpstart Consortium Human Microbiome Project Data Generation Working Group, PLoS One 2012 7 6 39315 10.1371/journal.pone.0039315 22720093
-
(2012)
PLoS One
, vol.7
, Issue.6
, pp. 539315
-
-
-
10
-
-
84862173705
-
A core human microbiome as viewed through 16S rRNA sequence clusters
-
10.1371/journal.pone.0034242 22719824
-
A core human microbiome as viewed through 16S rRNA sequence clusters. Huse SM, Ye Y, Zhou Y, Fodor AA, PLoS One 2012 7 6 34242 10.1371/journal.pone. 0034242 22719824
-
(2012)
PLoS One
, vol.7
, Issue.6
, pp. 534242
-
-
Huse, S.M.1
Ye, Y.2
Zhou, Y.3
Fodor, A.A.4
-
11
-
-
50049102061
-
Evaluation of PCR primer selectivity and phylogenetic specificity by using amplification of 16S rRNA genes from betaproteobacterial ammonia-oxidizing bacteria in environmental samples
-
10.1128/AEM.00288-08 18567688
-
Evaluation of PCR primer selectivity and phylogenetic specificity by using amplification of 16S rRNA genes from betaproteobacterial ammonia-oxidizing bacteria in environmental samples. Junier P, Kim OS, Hadas O, Imhoff JF, Witzel KP, Appl Environ Microbiol 2008 74 16 5231 5236 10.1128/AEM.00288-08 18567688
-
(2008)
Appl Environ Microbiol
, vol.74
, Issue.16
, pp. 5231-5236
-
-
Junier, P.1
Kim, O.S.2
Hadas, O.3
Imhoff, J.F.4
Witzel, K.P.5
-
12
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
10.1093/bioinformatics/btr381 21700674
-
UCHIME improves sensitivity and speed of chimera detection. Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R, Bioinformatics 2011 27 16 2194 2200 10.1093/bioinformatics/btr381 21700674
-
(2011)
Bioinformatics
, vol.27
, Issue.16
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
13
-
-
84855653372
-
Two-stage clustering (TSC): A pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons
-
10.1371/journal.pone.0030230 22253923
-
Two-stage clustering (TSC): a pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons. Jiang XT, Zhang H, Sheng HF, Wang Y, He Y, Zou F, Zhou HW, PLoS One 2012 7 1 30230 10.1371/journal.pone.0030230 22253923
-
(2012)
PLoS One
, vol.7
, Issue.1
, pp. 530230
-
-
Jiang, X.T.1
Zhang, H.2
Sheng, H.F.3
Wang, Y.4
He, Y.5
Zou, F.6
Zhou, H.W.7
-
14
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
10.1128/AEM.01541-09 19801464
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, et al. Appl Environ Microbiol 2009 75 23 7537 7541 10.1128/AEM.01541-09 19801464
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.23
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
-
15
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
10.1038/nmeth.f.303 20383131
-
QIIME allows analysis of high-throughput community sequencing data. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, et al. Nat Methods 2010 7 5 335 336 10.1038/nmeth.f.303 20383131
-
(2010)
Nat Methods
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
-
16
-
-
79959383523
-
Metagenomic biomarker discovery and explanation
-
10.1186/gb-2011-12-6-r60 21702898
-
Metagenomic biomarker discovery and explanation. Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett W, Huttenhower C, Genome Biol 2011 12 6 60 10.1186/gb-2011-12-6-r60 21702898
-
(2011)
Genome Biol
, vol.12
, Issue.6
, pp. 1860
-
-
Segata, N.1
Izard, J.2
Waldron, L.3
Gevers, D.4
Miropolsky, L.5
Garrett, W.6
Huttenhower, C.7
-
17
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
10.1101/gr.112730.110 21212162
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, et al. Genome Res 2011 21 3 494 504 10.1101/gr.112730.110 21212162
-
(2011)
Genome Res
, vol.21
, Issue.3
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
Giannoukos, G.6
Ciulla, D.7
Tabbaa, D.8
Highlander, S.K.9
Sodergren, E.10
-
18
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
10.1111/j.1462-2920.2010.02193.x 20236171
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Huse SM, Welch DM, Morrison HG, Sogin ML, Environ Microbiol 2010 12 7 1889 1898 10.1111/j.1462-2920.2010.02193.x 20236171
-
(2010)
Environ Microbiol
, vol.12
, Issue.7
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
19
-
-
73349110099
-
Wrinkles in the rare biosphere: Pyrosequencing errors can lead to artificial inflation of diversity estimates
-
10.1111/j.1462-2920.2009.02051.x 19725865
-
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Kunin V, Engelbrektson A, Ochman H, Hugenholtz P, Environ Microbiol 2010 12 1 118 123 10.1111/j.1462-2920.2009. 02051.x 19725865
-
(2010)
Environ Microbiol
, vol.12
, Issue.1
, pp. 118-123
-
-
Kunin, V.1
Engelbrektson, A.2
Ochman, H.3
Hugenholtz, P.4
-
20
-
-
84870834756
-
Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags
-
10.1128/AEM.01821-12 23001654
-
Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags. Wang Y, Sheng HF, He Y, Wu JY, Jiang YX, Tam NF, Zhou HW, Appl Environ Microbiol 2012 78 23 8264 8271 10.1128/AEM.01821-12 23001654
-
(2012)
Appl Environ Microbiol
, vol.78
, Issue.23
, pp. 8264-8271
-
-
Wang, Y.1
Sheng, H.F.2
He, Y.3
Wu, J.Y.4
Jiang, Y.X.5
Tam, N.F.6
Zhou, H.W.7
-
21
-
-
84872323101
-
Biased diversity metrics revealed by bacterial 16S pyrotags derived from different primer sets
-
10.1371/journal.pone.0053649 23341963
-
Biased diversity metrics revealed by bacterial 16S pyrotags derived from different primer sets. Cai L, Ye L, Tong AHY, Lok S, Zhang T, PLoS One 2013 8 1 53649 10.1371/journal.pone.0053649 23341963
-
(2013)
PLoS One
, vol.8
, Issue.1
, pp. 553649
-
-
Cai, L.1
Ye, L.2
Tong, A.H.Y.3
Lok, S.4
Zhang, T.5
|