A vision towards Scientific Communication Infrastructures: On bridging the realms of Research Digital Libraries and Scientific Data Centers

International Journal on Digital Libraries

Volumn 13, Issue 3-4, 2013, Pages 155-169

  Castelli, Donatella ^a   Manghi, Paolo ^a   Thanos, Costantino ^a  

^a ISTI CNR   (Italy)

Author keywords

Data Centers; Data Infrastructures; Research Digital Libraries; Scientific communication systems

Indexed keywords

EID: 84883657241     PISSN: 14325012     EISSN: 14321300     Source Type: Journal    
DOI: 10.1007/s00799-013-0106-7     Document Type: Article

References (67)

1. Gray, J.: A transformed scientific method. In: The Fourth Paradigm: Data Intensive Scientific Discovery. Microsoft, Redmond (2009).
2. Towards 2020 Science, Report of the 2020 Science Workshop, Venice, 30 June-1 July 2005. Microsoft Corporation (2006). http://research. microsoft. com/en-us/um/cambridge/projects/towards2020science.
3. Lord, P, Macdonald, A.: e-Science Curation Report prepared for the JISC Committee for the Support of Research. The Digital Archiving Consultancy Ltd., London (2003). http://www. jisc. ac. uk/uploaded_documents/e-ScienceReportFinal. pdf.
4. Mooney, H., Newton, MP.: The anatomy of a data citation: discovery, reuse, and credit. J. Librariansh. Sch. Commun. 1(1): eP1035 (2012). http://dx. doi. org/10. 7710/2162-3309. 1035.
5. Altman M., King G.: A proposed standard for the scholarly citation of quantitative data. D-Lib Mag. (2007).
6. White, H. C., Carrier, S., Thompson, A., Greenberg, J., Scherle, R.: The Dryad data repository: a Singapore framework metadata architecture in a DSpace environment. In: Proceedings of the International Conference on Dublin Core and Metadata Applications (DCMI '08), pp. 157-162. Dublin Core Metadata Initiative, Dublin (2008).
7. Candela, L., Katifori, A., Manghi, P.: e-Infrastructures. In: Meier zu Verl, C., Horstmann, W. (eds.) Studies on Subject-Specific Requirements for Open Access Infrastructures, pp. 125-164. Universitatsbibliothek Bielefeld, Bielefeld (2011).
8. Csordas, A., Ovelleiro, D., Wang, R., Foster, J. M., R'os, D., Vizca'no, J. A., Hermjakob, H.: PRIDE: Quality Control in a Proteomics Data Repository. Database 2012: bas004. (2012). doi: 10. 1093/database/bas004.
9. Reilly, S., Schallier, W., Schrimpf, S., Smit, E., Wilkinson, M.: Report on Integration of Data and Publications. Opportunities for Data Exchange (ODE). (2011).
10. Callaghan, S., Donegan, S., Pepler, S., Thorley, M., Cunningham, N., Kirsch, P., Ault, L., Bell, P., Bowie, R., Leadbetter, A., Lowry, R., Moncoiffe, G., Harrison, K., Smith-Haddon, B., Weatherby, A., Wright, D.: Making data a first class scientific output: data citation and publication by NERC's environmental data centers. Int. J. Digit. Curation 7(1), 107-113 (2012).
11. Towards better access to scientific information: boosting the benefits of public investments in research. Communication from the Commission to the European Parliament, The Council, the European Economic and Social Committee and the Committee of the Regions. COM (2012) 401 final. Brussels, 17. 7. 2012. http://ec. europa. eu/research/science-society/document_library/pdf_06/era-communication-towards-better-access-to-scientific-information_en. pdf.
12. JISC an data. Data centres: their use, value and impact. A Research Information Network report, September 2011. http://www. jisc. ac. uk/news/stories/2011/09/~/media/-Data%20Centres-Updated. ashx.
13. Voss, A., Procter, R.: Virtual research environments in scholarly work and communications. Library Hi Tech 27(2): 174-190 (2009).
14. Borgman, C. L.: The conundrum of sharing research data. J. Am. Soc. Inf. Sci. Technol. 63(6): 1059-1078 (2012). http://dx. doi. org/10. 1002/asi. 22634.
15. Pampel, H., Pfeiffenberger, H., Schfer, A., Smit, E., Prll, S., Bruch, C.: Report on Peer Review of Research Data in Scholarly Communication (2012). hdl: 10013/epic. 39289.
16. Renear, A., Palmer, C.: Strategic Reading, Ontologies, and the Future of Scientific Publishing, Science, vol. 325. (2009).
17. Simons, N.: Implementing DOIs for research data. D-Lib Mag. 18(5/6), (2012). doi: 10. 1045/may2012-simons.
18. Starr, J., Gastlis, A.: CitedBy: a metadata scheme for DataCite. D-Lib Mag. 17(1/2) (2011). doi: 10. 1045/january2011-starr.
19. Green, T.: We Need Publishing Standards for Datasets and Data Tables. OECD Publishing White Paper, OECD Publishing, Paris (2009). doi: 10. 1787/603233448430.
20. Smith, M., Barton, M., et al.: DSpace: an open source dynamic digital repository. D-Lib Mag. 9(1), (2003). http://www. dlib. org/dlib/january03/smith/01smith. html.
21. Payette, S., Lagoze, C.: Flexible and extensible digital objects repository architecture (FEDORA). In: Research and Advanced Technology for Digital Libraries. Proceedings of the Second Conference on Digital Libraries, ECDL 98, Crete, Greece. Springer Lecture Notes in Computer Science, pp. 41-59. (1998).
22. Witten, I. H., Bainbridge D.: How to Build a Digital Library. Elsevier, Amsterdam (2002).
23. De Schutter, E.: Data publishing and scientific journals: the future of the scientific paper in a world of shared data. Neuroinform. J. 8(3), 151-153 (2010). doi: 10. 1007/s12021-010-9084-8.
24. Vishwas, C., Penev, L.: The data paper: a mechanism to incentivize data publishing in biodiversity science. BMC Bioinform. 12(Suppl 15), S2 (2011). doi: 10. 1186/1471-2105-12-S15-S2.
25. Shotton, D.: Semantic publishing: the coming revolution in scientific journal publishing. Learn. Publ. 22(2), 85-94 (2009).
26. David Tempest (Universal Access Team Leader, Elsevier UK) Journals and data publishing: enhancing, linking and mining. In: DCC Research Data Management Forum 8: Research Data Management-Engaging with the Publishers, Southampton, 29-30 March 2012.
27. Castelli, D., Pagano, P.: OpenDLib: a digital library service system. In: Proceedings of the 6th European Conference on Research and Advanced Technology for Digital Libraries (ECDL'02) (2002).
28. Aalbersberg, I. J., Heeman, F., Koers, H., Zudilova-Seinstra, E.: Elsevier's article of the future enhancing the user experience and integrating data through applications. Insights UKSG J. 25(1), 33-43 (2012).
29. Attwood, T. K., Kell, D. B., McDermott, P., Marsh, J., Pettifer, S. R., Thorne, D.: Utopia documents: linking scholarly literature with research data. Bioinformatics 26(18): 568-74 (2010). doi: 10. 1093/bioinformatics/btq383.
30. Pham, Q., Malik, T., Foster, I., Di Lauro, R., Montella, R.: SOLE: linking research papers with science objects. In: Provenance and Annotation of Data and Processes. Lecture Notes in Computer Science, vol. 7525, pp. 203-208. (2012). doi: 10. 1007/978-3-642-34222-6_16.
31. Woutersen-Windhouwer, S., Brandsma, R., Verhaar, P., Hogenaar, A., Hoogerwerf, M., Doorenbosch, P., Durr, E., Ludwig, J., Schmidt, B., Sierman, B.: Enhanced Publications. In Vernooy-Gerritsen, M. (ed.) SURF Foundation, Amsterdam University Press, Amsterdam (2009).
32. Kircz, J. G.: New practices for electronic publishing new forms of the scientific paper. Learn. Publ. 15(1), (2002).
33. Candela, L., Castelli, D., Pagano, P., Simi, M.: From heterogeneous information spaces to virtual documents. In: Fox, E. A., Neuhold, E. J., Premsmit, P., Wuwongse, V. (eds.) Digital Libraries: Implementing Strategies and Sharing Experiences: 8th International Conference on Asian Digital Libraries, ICADL 2005 (Bangkok, Thailand, 12-1 December). Proceedings, pp. 11-22. (2005).
34. Lynch, C.: Jim Gray's fourth paradigm and the construction of the scientific record. In: Hey, T., Tansley, S., Tolle, C. (eds.) The Fourth Paradigm, pp. 177-183. Microsoft Corporation, Redmond (2009).
35. Hunter, J.: Scientific Models: A User-Oriented Approach to the Integration of Scientific Data and Digital Libraries. VALA 2006, Melbourne (2006).
36. Bechhofer, S., De Roure, D., Gamble, M., Goble, C., Buchan, I.: Research objects: towards exchange and reuse of digital knowledge. In: Proceedings of The Future of the Web for Collaborative Science (FWCS 2010), Raleigh, NC, USA. http://www. w3. org/wiki/HCLS/WWW2010/Workshop.
37. Brammer, G. R., Crosby, R. W., Matthews, S. J., Williams, T. L.: Paper mch: creating dynamic reproducible science. Procedia Comput. Sci. 4, 658-667 (2011). doi: 10. 1016/j. procs. 2011. 04. 069.
38. van Gorp, P., Mazanek, S.: SHARE: a web portal for creating and sharing executable research papers. Procedia Comput. Sci. 4, 89-597 (2011). doi: 10. 1016/j. procs. 2011. 04. 062.
39. McCallum, I., Plag, H. P., Fritz, S.: Data citation standard: a means to support data sharing, attribution, and traceability. In: Abbasi, A., Giesen, N. (eds.) EGU General Assembly Conference Abstracts, vol. 14. Series EGU General Assembly. (2012).
40. Schfer, A., Pampel, H., Pfeiffenberger, H., Dallmeier-Tiessen, S., Tissari, S., Darby, R., Giaretta, K., Giaretta, D., Gitmans, K., Helin, H., Lambert, S., Mele, S., Reilly, S., Ruiz, S., Sandberg, M., Schallier, W., Schrimpf, S., Smit, E., Wilkinson, M. Wilson, M.: Baseline Report on Drivers and Barriers in Data Sharing. (2011).
41. da Silva, J. R., Ribeiro, C., Lopes, J. C.: Semi-automated application profile generation for research data assets. In: Metadata and Semantics Research Communications in Computer and Information Science, vol. 343, pp. 98-106. (2012).
42. Berners-Lee, T.: Linked Data. Archived on December 1st, 2006. (2006) http://web. archive. org/web/20061201121454, http://www. w3. org/DesignIssues/LinkedData. html.
43. Bizer, C., Heath, T., Berners-Lee, T.: Linked Data-the story so far. Int. J. Semant. Web Inf. Syst. 5(3), 1-22 (2009). doi: 10. 4018/jswis. 2009081901.
44. Lagoze, C., van de Sompel, H.: The OAI Protocol for Object Reuse and Exchange. http://www. openarchives. org/ore.
45. Heath, T., Bizer, C.: Linked Data: evolving the web into a global data space. In: Synthesis Lectures on the Semantic Web: Theory and Technology, vol. 1, issue no. 1, pp. 1-136. Morgan & Claypool, Palo Alto (2011). Retrieved from http://linkeddatabook. com/editions/1. 0/#htoc9.
46. Ed Summers: Linking Things on the Web: A Pragmatic Examination of Linked Data for Libraries, Archives and Museums. Library of Congress (2013). arXiv: 1302. 4591.
47. Hyvnen, Eero: Publishing and Using Cultural Heritage Linked Data on the Semantic Web. Morgan & Claypool, Palo Alto (2012).
48. Meier zu Verl, C., Horstmann, W. (eds.) Studies on Subject-Specific Requirements for Open Access Infrastructure. Universittsbibliothek, Bielefeld (2011). doi: 10. 2390/PUB-2011-1.
49. Bechhofer, S., Buchan, I., De Roure, D., Missier, P., Ainsworth, J., Bhagat, J., Couch, P., Cruickshank, D., Delderfield, M., Dunlop, I., Gamble, M., Michaelides, D., Owen, S., Newman, D., Sufi, S., Goble, C.: Why Linked Data is Not Enough for Scientists. Future Generation Computer Systems. (2011). Available online 19 August ISSN: 0167-739X. doi: 10. 1016/j. future. 2011. 08. 004.
50. Breeze, J. L., Jean-Baptiste, P.: Data sharing and publishing in the field of neuroimaging. Gigascience 1, 1, 1-3 (2012).
51. Parsons, M. A., Duerr, R., Minster, J. B.: Data citation and peer review. Eos Trans. AGU 91(34), 297 (2010). doi: 10. 1029/2010EO340001.
52. Schindler, C., Veja, C., Rittberger, M., Vrandecic, D.: How to teach digital library data to swim into research. In: Ghidini, C., Ngomo, A.-C. N., Lindstaedt, S. N., Pellegrini, T. (eds.) Proceedings of the 7th International Conference on Semantic Systems (I-Semantics '11). ACM, New York, NY, USA, 142-149. (2011) doi: 10. 1145/2063518. 2063537. http://doi. acm. org/10. 1145/2063518. 2063537.
53. Krtzsch, M., Vrandecic, D., Volkel, M.: Semantic MediaWiki. In: The Semantic Web-ISWC. LNCS 4273, pp. 935-942. Springer, Berlin (2006). doi: 10. 1007/119260.
54. Quilitz, B., Leser, U.: Querying distributed RDF data sources with SPARQL. In: Proceedings of The Semantic Web: Research and Applications. Lecture Notes in Computer Science, vol. 5021, pp. 524-538. (2008). doi: 10. 1007/978-3-540-68234-9_39.
55. Zeng, K., Yang, J., Wang, H., Shao, B., Wang, Z.: A distributed graph engine for web scale RDF data. In: Proceedings of the VLDB Endowment, vol. 6, issue no. 4. (2013).
56. Johansson, A., Ottosson, M. O.: A national current research information system for Sweden. In: e-Infrastructures for Research and Innovation: Linking Information Systems to Improve Scientific Knowledge Production, pp. 67-71. Agentura Action M (2012).
57. Asserson, A., Jeffery, K., Lopatenko, A.: CERIF: past, present and future: an overview. In: Proceedings: Gaining Insight from Research Information. 6th International Conference on Current Research Information Systems. Kassel, Germany (2002).
58. Manghi, P., Mikulicic, M., Candela, L., Castelli, D., Pagano, P.: Realizing and maintaining aggregative digital library systems: D-NET software toolkit and OAIster dystem. D-Lib Mag. 16(3/4), (2010).
59. Developing Data Attribution and Citation Practices and Standards. An International Symposium and Workshop. August 22-23, US CODATA and the Board on Research Data and Information, in collaboration with CODATA-ICSTI Task Group on Data Citation Standards and Practices. (2011). http://sites. nationalacademies. org/PGA/brdi/PGA_064019.
60. British Library, Datacite, Jisc. Workshop report-describe, disseminate, discover: metadata for effective data citation, published by C. Wilkinson, 24 july (2012). http://www. datacite. org/node/67.
61. Manghi, P., Bolikowski, L., Manola, N., Shirrwagen, J., Smith, T.: Openaireplus: the european scholarly communication data infrastructure. D-Lib Mag. 18(9-10), (2012).
62. Allinson, J., Franois, S., Lewis, S.: Sword: simple web-service offering repository deposit. Ariadne 54, 2 (2008).
63. Schmidt, M.-T., et al.: The enterprise service bus: making service-oriented architecture real. IBM Syst. J. 44(4), 781-797 (2005).
64. GRDI2020 Consortium. Global Research Data Infrastructures: The Big Data Challenges. GRDI200 Final Roadmap Report, February 2012. http://www. grdi2020. eu/Repository/FileScaricati/e2b03611-e58f-4242-946a-5b21f17d2947. pdf.
65. Mazurek, C., Mielnicki, M., Nowak, A., Stroinski, M., Werla, M., Weglarz, J.: Architecture for aggregation, processing and provisioning of data from heterogeneous scientific information services. In Bembenik, R., Skonieczny, L., Rybinski, H., Kryszkiewicz, M., Niezgodka, M. (eds.) Intelligent Tools for Building a Scientific Information Platform. Studies in Computational Intelligence, vol. 467, pp. 529-546. Springer, Berlin (2013). ISBN: 1978-3-642-35646-9. doi: 10. 1007/978-3-642-35647-632.
66. Candela, L., Castelli, D., Pagano, P.: gCube: A service-oriented application framework on the grid. ERCIM News 48-49 (2008).
67. Manghi, P., Manola, N., Horstmann, W., Peters, D.: An infrastructure for managing EC funded research output. Int. J. Grey Lit. 6(1), (2010). http://www. openaire. eu/it/about-openaire/publications-presentations/doc_details/189-an-infrastructure-for-managing-ec-funded-research-output.