Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing

BMC Genomics

Volumn 14, Issue 1, 2013, Pages

  Tremblay, Arianne ^a,f   Hosseini, Parsa ^b,c   Li, Shuxian ^d   Alkharouf, Nadim W ^e   Matthews, Benjamin F ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b GEORGE MASON UNIVERSITY   (United States)

^c NATIONAL INSTITUTES OF HEALTH   (United States)

^d AGRICULTURAL RESEARCH SERVICE   (United States)

^e TOWSON UNIVERSITY   (United States)

^f UNIVERSITY OF MARYLAND BALTIMORE COUNTY   (United States)

Author keywords

Deep sequencing; Phakopsora pachyrhizi; Plant pathogen interaction; Soybean; Soybean rust; Transcript abundance

Indexed keywords

ADENOSINE TRIPHOSPHATE; CONTIG; DICARBOXYLIC ACID; GLYCOLYTIC ENZYME; GLYOXYLIC ACID; MESSENGER RNA; PENTOSE PHOSPHATE; PYRUVIC ACID;

AMINO ACID METABOLISM; ARTICLE; CARBOHYDRATE METABOLISM; CONTROLLED STUDY; CULTIVAR; DISEASE PREDISPOSITION; DNA SYNTHESIS; ELECTRON TRANSPORT; ENERGY YIELD; FATTY ACID METABOLISM; FUNGAL SPORE GERMINATION; FUNGUS; GENE EXPRESSION; GENETIC TRANSCRIPTION; GLYCOLYSIS; HAUSTORIUM; NONHUMAN; NUCLEOTIDE METABOLISM; OXIDATIVE PHOSPHORYLATION; PHAKOPSORA PACHYRHIZI; PLANT FUNGUS INTERACTION; PLANT LEAF; POLYMERASE CHAIN REACTION; PROTEIN EXPRESSION; PROTEIN SYNTHESIS; RNA SEQUENCE; RNA SYNTHESIS; RUST (PLANT DISEASE); SEQUENCE ANALYSIS; SOYBEAN; SPOROGENESIS; UREDINIOSPORE;

FUNGI; GLYCINE MAX; PHAKOPSORA PACHYRHIZI;

BASIDIOMYCOTA; CONTIG MAPPING; GENE LIBRARY; GENES, FUNGAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HOST-PATHOGEN INTERACTIONS; METABOLIC NETWORKS AND PATHWAYS; PLANT DISEASES; PLANT LEAVES; RNA, FUNGAL; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; SOYBEANS; TRANSCRIPTOME;

EID: 84883618235     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-614     Document Type: Article

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