-
1
-
-
34548414947
-
Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms
-
Allers, E., Gomez-Consarnau, L., Pinhassi, J., Gasol, J.M., Simek, K., and Pernthaler, J. (2007) Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms. Environ Microbiol 9: 2417-2429.
-
(2007)
Environ Microbiol
, vol.9
, pp. 2417-2429
-
-
Allers, E.1
Gomez-Consarnau, L.2
Pinhassi, J.3
Gasol, J.M.4
Simek, K.5
Pernthaler, J.6
-
2
-
-
50049126125
-
Resistance, resilience, and redundancy in microbial communities
-
Allison, S.D., and Martiny, J.B.H. (2008) Resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci USA 105: 11512-11519.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 11512-11519
-
-
Allison, S.D.1
Martiny, J.B.H.2
-
3
-
-
34249903107
-
Seasonal variations in contributions of different bacteria groups to the uptake of low-molecular-weight compounds in northwestern Mediterranean coastal waters
-
Alonsó-Saez, L., and Gasol, J.M. (2007) Seasonal variations in contributions of different bacteria groups to the uptake of low-molecular-weight compounds in northwestern Mediterranean coastal waters. Appl Environ Microbiol 73: 3528-3535.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3528-3535
-
-
Alonsó-Saez, L.1
Gasol, J.M.2
-
4
-
-
0002645734
-
Bacterioplankton growth in seawater: I. Growth kinetics and cellular characterisitics in seawater cultures
-
Ammerman, J.W., Fuhrman, J.A., Hagström, Å., and Azam, F. (1984) Bacterioplankton growth in seawater: I. Growth kinetics and cellular characterisitics in seawater cultures. Mar Ecol Prog Ser 10: 31-39.
-
(1984)
Mar Ecol Prog Ser
, vol.10
, pp. 31-39
-
-
Ammerman, J.W.1
Fuhrman, J.A.2
Hagström, A.3
Azam, F.4
-
5
-
-
0030052999
-
Bacterial utilization of different size classes of dissolved organic matter
-
Amon, R.M.W., and Benner, R. (1996) Bacterial utilization of different size classes of dissolved organic matter. Limnol Oceanogr 41: 41-51.
-
(1996)
Limnol Oceanogr
, vol.41
, pp. 41-51
-
-
Amon, R.M.W.1
Benner, R.2
-
6
-
-
0032076192
-
Microbial control of oceanic carbon flux: the plot thickens
-
Azam, F. (1998) Microbial control of oceanic carbon flux: the plot thickens. Science 280: 694-696.
-
(1998)
Science
, vol.280
, pp. 694-696
-
-
Azam, F.1
-
7
-
-
0001499953
-
The ecological role of water-column microbes in the Sea
-
Azam, F., Fenchel, T., Field, J.G., Gray, J.S., Meyerreil, L.A., and Thingstad, F. (1983) The ecological role of water-column microbes in the Sea. Mar Ecol Prog Ser 10: 257-263.
-
(1983)
Mar Ecol Prog Ser
, vol.10
, pp. 257-263
-
-
Azam, F.1
Fenchel, T.2
Field, J.G.3
Gray, J.S.4
Meyerreil, L.A.5
Thingstad, F.6
-
8
-
-
21344441499
-
Structural and replicative diversity of large plasmids from sphingomonads that degrade polycyclic aromatic compounds and xenobiotics
-
Basta, T., Buerger, S., and Stolz, A. (2005) Structural and replicative diversity of large plasmids from sphingomonads that degrade polycyclic aromatic compounds and xenobiotics. Microbiology 151: 2025-2037.
-
(2005)
Microbiology
, vol.151
, pp. 2025-2037
-
-
Basta, T.1
Buerger, S.2
Stolz, A.3
-
9
-
-
0001881439
-
Chemical composition and reactivity
-
Hansell, D.A., and Carlson, C.A. (eds). New York: Elsivier Science
-
Benner, R. (2002) Chemical composition and reactivity. In Biochemistry of Marine Dissolved Organic Matter. Hansell, D.A., and Carlson, C.A. (eds). New York: Elsivier Science, pp. 59-90.
-
(2002)
Biochemistry of Marine Dissolved Organic Matter
, pp. 59-90
-
-
Benner, R.1
-
10
-
-
84859918979
-
Magnitude and regulation of bacterioplankton respiratory quotient across freshwater environmental gradients
-
Berggren, M., Lapierre, J.F., and del Giorgio, P.A. (2011) Magnitude and regulation of bacterioplankton respiratory quotient across freshwater environmental gradients. ISME J 6: 984-993.
-
(2011)
ISME J
, vol.6
, pp. 984-993
-
-
Berggren, M.1
Lapierre, J.F.2
del Giorgio, P.A.3
-
11
-
-
33646540724
-
Optimization of DNA extraction for quantitative marine bacterioplankton community analysis
-
Boström, K.H., Simu, K., Hagström, Å., and Riemann, L. (2004) Optimization of DNA extraction for quantitative marine bacterioplankton community analysis. Limnol Oceanogr Methods 2: 365-373.
-
(2004)
Limnol Oceanogr Methods
, vol.2
, pp. 365-373
-
-
Boström, K.H.1
Simu, K.2
Hagström, A.3
Riemann, L.4
-
12
-
-
4644281377
-
Experimental and theoretical bases of specific affinity, a cytoarchitecture-based formulation of nutrient collection proposed to supercede the Michaels-Menten paradigm of microbial kinetics
-
Button, D.K., Robertson, B., Gustafson, E., and Zhao, X.M. (2004) Experimental and theoretical bases of specific affinity, a cytoarchitecture-based formulation of nutrient collection proposed to supercede the Michaels-Menten paradigm of microbial kinetics. Appl Environ Microbiol 70: 5511-5521.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5511-5521
-
-
Button, D.K.1
Robertson, B.2
Gustafson, E.3
Zhao, X.M.4
-
13
-
-
75249107844
-
PyNAST: a flexible tool for aligning sequences to a template alignment
-
Caporaso, J.G., Bittinger, K., Bushman, F.D., DeSantis, T.Z., Andersen, G.L., and Knight, R. (2010a) PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26: 266-267.
-
(2010)
Bioinformatics
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
DeSantis, T.Z.4
Andersen, G.L.5
Knight, R.6
-
14
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J.G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F.D., Costello, E.K., etal. (2010b) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7: 335-336.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
15
-
-
0030023909
-
Growth of bacterioplankton and consumption of dissolved organic carbon in the Sargasso Sea
-
Carlson, C.A., and Ducklow, H.W. (1996) Growth of bacterioplankton and consumption of dissolved organic carbon in the Sargasso Sea. Aquat Microb Ecol 10: 69-85.
-
(1996)
Aquat Microb Ecol
, vol.10
, pp. 69-85
-
-
Carlson, C.A.1
Ducklow, H.W.2
-
16
-
-
0028982362
-
Bacterial ectoenzymes in marine waters - activity ratios and temperature responses in 3 oceanographic provinces
-
Christian, J.R., and Karl, D.M. (1995) Bacterial ectoenzymes in marine waters - activity ratios and temperature responses in 3 oceanographic provinces. Limnol Oceanogr 40: 1042-1049.
-
(1995)
Limnol Oceanogr
, vol.40
, pp. 1042-1049
-
-
Christian, J.R.1
Karl, D.M.2
-
17
-
-
0002556336
-
Microbial ectoenzymes in aquatic environments
-
Overbeck, J., and Chróst, R.J. (eds). New York: Springer Verlag
-
Chróst, R.J. (1990) Microbial ectoenzymes in aquatic environments. In Aquatic Microbial Ecology. Biochemical and Molecular Approaches. Overbeck, J., and Chróst, R.J. (eds). New York: Springer Verlag, pp. 47-78.
-
(1990)
Aquatic Microbial Ecology. Biochemical and Molecular Approaches
, pp. 47-78
-
-
Chróst, R.J.1
-
19
-
-
78049300920
-
Stealth predation and the predatory success of the invasive ctenophore Mnemiopsis leidyi
-
Colin, S.P., Costello, J.H., Hansson, L.J., Titelman, J., and Dabiri, J.O. (2010) Stealth predation and the predatory success of the invasive ctenophore Mnemiopsis leidyi. Proc Natl Acad Sci USA 107: 17223-17227.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 17223-17227
-
-
Colin, S.P.1
Costello, J.H.2
Hansson, L.J.3
Titelman, J.4
Dabiri, J.O.5
-
20
-
-
80053182613
-
Composition influences the pathway but not the outcome of the metabolic response of bacterioplankton to resource shifts
-
Comte, J., and Del Giorgio, P.A. (2011) Composition influences the pathway but not the outcome of the metabolic response of bacterioplankton to resource shifts. PLoS ONE 6: e25266.
-
(2011)
PLoS ONE
, vol.6
-
-
Comte, J.1
Del Giorgio, P.A.2
-
21
-
-
79959990824
-
Jellyfish blooms result in a major microbial respiratory sink of carbon in marine systems
-
Condon, R.H., Steinberg, D.K., del Giorgio, P.A., Bouvier, T.C., Bronk, D.A., Graham, W.M., and Ducklow, H.W. (2011) Jellyfish blooms result in a major microbial respiratory sink of carbon in marine systems. Proc Natl Acad Sci USA 108: 10225-10230.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 10225-10230
-
-
Condon, R.H.1
Steinberg, D.K.2
del Giorgio, P.A.3
Bouvier, T.C.4
Bronk, D.A.5
Graham, W.M.6
Ducklow, H.W.7
-
22
-
-
0034068899
-
Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
-
Cottrell, M.T., and Kirchman, D.L. (2000) Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl Environ Microbiol 66: 1692-1697.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1692-1697
-
-
Cottrell, M.T.1
Kirchman, D.L.2
-
23
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis, T.Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E.L., Keller, K., etal. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72: 5069-5072.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
-
24
-
-
84864364662
-
Cascading effects of the ctenophore Mnemiopsis leidyi on the planktonic food web in a nutrient limited estuarine system
-
Dinasquet, J., Titelman, J., Friis Møller, L., Setälä, O., Granhag, L., Andersen, T., etal. (2012) Cascading effects of the ctenophore Mnemiopsis leidyi on the planktonic food web in a nutrient limited estuarine system. Mar Ecol Prog Ser 460: 49-61.
-
(2012)
Mar Ecol Prog Ser
, vol.460
, pp. 49-61
-
-
Dinasquet, J.1
Titelman, J.2
Friis Møller, L.3
Setälä, O.4
Granhag, L.5
Andersen, T.6
-
25
-
-
0033754085
-
Succession of pelagic marine bacteria during enrichment: a close look at cultivation-induced shifts
-
Eilers, H., Pernthaler, J., and Amann, R. (2000) Succession of pelagic marine bacteria during enrichment: a close look at cultivation-induced shifts. Appl Environ Microbiol 66: 4634-4640.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4634-4640
-
-
Eilers, H.1
Pernthaler, J.2
Amann, R.3
-
26
-
-
0035977793
-
Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing
-
Fandino, L.B., Riemann, L., Steward, G.F., Long, R.A., and Azam, F. (2001) Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing. Aquat Microb Ecol 23: 119-130.
-
(2001)
Aquat Microb Ecol
, vol.23
, pp. 119-130
-
-
Fandino, L.B.1
Riemann, L.2
Steward, G.F.3
Long, R.A.4
Azam, F.5
-
27
-
-
33748353399
-
Annually reoccurring bacterial communities are predictable from ocean conditions
-
Fuhrman, J.A., Hewson, I., Schwalbach, M.S., Steele, J.A., Brown, M.V., and Naeem, S. (2006) Annually reoccurring bacterial communities are predictable from ocean conditions. Proc Natl Acad Sci USA 103: 13104-13109.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 13104-13109
-
-
Fuhrman, J.A.1
Hewson, I.2
Schwalbach, M.S.3
Steele, J.A.4
Brown, M.V.5
Naeem, S.6
-
28
-
-
0033865159
-
Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities
-
Gasol, J.M., and del Giorgio, P.A. (2000) Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities. Sci Mar 64: 197-224.
-
(2000)
Sci Mar
, vol.64
, pp. 197-224
-
-
Gasol, J.M.1
del Giorgio, P.A.2
-
29
-
-
84872981638
-
Expression patterns reveal niche diversification in a marine microbial assemblage
-
Gifford, S.M., Sharma, S., Booth, M., and Moran, M.A. (2013) Expression patterns reveal niche diversification in a marine microbial assemblage. ISME J 7: 281-298.
-
(2013)
ISME J
, vol.7
, pp. 281-298
-
-
Gifford, S.M.1
Sharma, S.2
Booth, M.3
Moran, M.A.4
-
30
-
-
23844446418
-
Genome streamlining in a cosmopolitan oceanic bacterium
-
Giovannoni, S.J., Tripp, H.J., Givan, S., Podar, M., Vergin, K.L., Baptista, D., etal. (2005) Genome streamlining in a cosmopolitan oceanic bacterium. Science 309: 1242-1245.
-
(2005)
Science
, vol.309
, pp. 1242-1245
-
-
Giovannoni, S.J.1
Tripp, H.J.2
Givan, S.3
Podar, M.4
Vergin, K.L.5
Baptista, D.6
-
31
-
-
84865724817
-
Structuring of bacterioplankton communities by specific dissolved organic carbon compounds
-
Gómez-Consarnau, L., Lindh, M.V., Gasol, J.M., and Pinhassi, J. (2012) Structuring of bacterioplankton communities by specific dissolved organic carbon compounds. Environ Microbiol 14: 2361-2378.
-
(2012)
Environ Microbiol
, vol.14
, pp. 2361-2378
-
-
Gómez-Consarnau, L.1
Lindh, M.V.2
Gasol, J.M.3
Pinhassi, J.4
-
32
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas, B.J., Gevers, D., Earl, A.M., Feldgarden, M., Ward, D.V., Giannoukos, G., etal. (2011) Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21: 494-504.
-
(2011)
Genome Res
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
Giannoukos, G.6
-
33
-
-
0027065592
-
Global biogeochemical cycles: progress and problems
-
Hedges, J.I. (1992) Global biogeochemical cycles: progress and problems. Mar Chem 39: 67-93.
-
(1992)
Mar Chem
, vol.39
, pp. 67-93
-
-
Hedges, J.I.1
-
34
-
-
80052964484
-
Transitions in bacterial communities along the 2000km salinity gradient of the Baltic Sea
-
Herlemann, D., Labrenz, M., Jurgens, K., Bertilsson, S., Waniek, J.J., and Andersson, A. (2011) Transitions in bacterial communities along the 2000km salinity gradient of the Baltic Sea. ISME J 10: 1571-1579.
-
(2011)
ISME J
, vol.10
, pp. 1571-1579
-
-
Herlemann, D.1
Labrenz, M.2
Jurgens, K.3
Bertilsson, S.4
Waniek, J.J.5
Andersson, A.6
-
35
-
-
0012624764
-
Ecological significance of bacterial enzymes in marine environment
-
Burns, R.G., and Dick, R.P. (eds). New York: CRC Press
-
Hoppe, H.-G., Arnosti, C., and Herndl, G.J. (2002) Ecological significance of bacterial enzymes in marine environment. In Enzymes in the Environment: Activity, Ecology, and Applications. Burns, R.G., and Dick, R.P. (eds). New York: CRC Press, pp. 73-108.
-
(2002)
Enzymes in the Environment: Activity, Ecology, and Applications
, pp. 73-108
-
-
Hoppe, H.-G.1
Arnosti, C.2
Herndl, G.J.3
-
36
-
-
77954758453
-
Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean
-
Jiao, N., Herndl, G.J., Hansell, D.A., Benner, R., Kattner, G., Wilhelm, S.W., etal. (2010) Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean. Nat Rev Microbiol 8: 593-599.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 593-599
-
-
Jiao, N.1
Herndl, G.J.2
Hansell, D.A.3
Benner, R.4
Kattner, G.5
Wilhelm, S.W.6
-
37
-
-
0030620505
-
Regulation of bacterial growth rates by dissolved organic carbon and temperature in the equatorial Pacific Ocean
-
Kirchman, D.L., and Rich, J.H. (1997) Regulation of bacterial growth rates by dissolved organic carbon and temperature in the equatorial Pacific Ocean. Microb Ecol 33: 11-20.
-
(1997)
Microb Ecol
, vol.33
, pp. 11-20
-
-
Kirchman, D.L.1
Rich, J.H.2
-
38
-
-
4243123959
-
Production and bioavailability of autochthonous dissolved organic carbon: effects of mesozooplankton
-
Kragh, T., and Søndergaard, M. (2004) Production and bioavailability of autochthonous dissolved organic carbon: effects of mesozooplankton. Aquat Microb Ecol 36: 61-72.
-
(2004)
Aquat Microb Ecol
, vol.36
, pp. 61-72
-
-
Kragh, T.1
Søndergaard, M.2
-
39
-
-
42149103424
-
Effect of exposure to sunlight and phosphorus-limitation on bacterial degradation of coloured dissolved organic matter (CDOM) in freshwater
-
Kragh, T., Søndergaard, M., and Tranvik, L. (2008) Effect of exposure to sunlight and phosphorus-limitation on bacterial degradation of coloured dissolved organic matter (CDOM) in freshwater. FEMS Microbiol Ecol 64: 230-239.
-
(2008)
FEMS Microbiol Ecol
, vol.64
, pp. 230-239
-
-
Kragh, T.1
Søndergaard, M.2
Tranvik, L.3
-
40
-
-
70349458100
-
The genomic basis of trophic strategy in marine bacteria
-
Lauro, F.M., McDougald, D., Thomas, T., Williams, T.J., Egan, S., Rice, S., etal. (2009) The genomic basis of trophic strategy in marine bacteria. Proc Natl Acad Sci USA 106: 15527-15533.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 15527-15533
-
-
Lauro, F.M.1
McDougald, D.2
Thomas, T.3
Williams, T.J.4
Egan, S.5
Rice, S.6
-
41
-
-
0025660577
-
Excretion of organic-carbon by phytoplankton - its relation to algal biomass, primary productivity and bacterial secondary productivity in the Baltic Sea
-
Lignell, R. (1990) Excretion of organic-carbon by phytoplankton - its relation to algal biomass, primary productivity and bacterial secondary productivity in the Baltic Sea. Mar Ecol Prog Ser 68: 85-99.
-
(1990)
Mar Ecol Prog Ser
, vol.68
, pp. 85-99
-
-
Lignell, R.1
-
42
-
-
78049286743
-
Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
-
McCarren, J., Becker, J.W., Repeta, D.J., Shi, Y.M., Young, C.R., Malmstrom, R.R., etal. (2010) Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proc Natl Acad Sci USA 107: 16420-16427.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 16420-16427
-
-
McCarren, J.1
Becker, J.W.2
Repeta, D.J.3
Shi, Y.M.4
Young, C.R.5
Malmstrom, R.R.6
-
43
-
-
0000318605
-
Variability in ectohydrolytic enzyme activities of pelagic marine bacteria and its significance for substrate processing in the sea
-
Martinez, J., Smith, D.C., Steward, G.F., and Azam, F. (1996) Variability in ectohydrolytic enzyme activities of pelagic marine bacteria and its significance for substrate processing in the sea. Aquat Microb Ecol 10: 223-230.
-
(1996)
Aquat Microb Ecol
, vol.10
, pp. 223-230
-
-
Martinez, J.1
Smith, D.C.2
Steward, G.F.3
Azam, F.4
-
44
-
-
34547150003
-
Ecological genomics of marine roseobacters
-
Moran, M.A., Belas, R., Schell, M.A., Gonzalez, J.M., Sun, F., Sun, S., etal. (2007) Ecological genomics of marine roseobacters. Appl Environ Microbiol 73: 4559-4569.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 4559-4569
-
-
Moran, M.A.1
Belas, R.2
Schell, M.A.3
Gonzalez, J.M.4
Sun, F.5
Sun, S.6
-
45
-
-
34447307444
-
Bacterioplankton assemblages transforming dissolved organic compounds in coastal seawater
-
Mou, X.Z., Hodson, R.E., and Moran, M.A. (2007) Bacterioplankton assemblages transforming dissolved organic compounds in coastal seawater. Environ Microbiol 9: 2025-2037.
-
(2007)
Environ Microbiol
, vol.9
, pp. 2025-2037
-
-
Mou, X.Z.1
Hodson, R.E.2
Moran, M.A.3
-
46
-
-
38949113807
-
Bacterial carbon processing by generalist species in the coastal ocean
-
Mou, X.Z., Sun, S.L., Edwards, R.A., Hodson, R.E., and Moran, M.A. (2008) Bacterial carbon processing by generalist species in the coastal ocean. Nature 451: 708-711.
-
(2008)
Nature
, vol.451
, pp. 708-711
-
-
Mou, X.Z.1
Sun, S.L.2
Edwards, R.A.3
Hodson, R.E.4
Moran, M.A.5
-
47
-
-
0002591025
-
Production mechanisms of dissolved organic matter
-
Kirchman, D.L. (ed.). New York: Wiley
-
Nagata, T. (2000) Production mechanisms of dissolved organic matter. In Microbial Ecology of the Ocean. Kirchman, D.L. (ed.). New York: Wiley, pp. 121-152.
-
(2000)
Microbial Ecology of the Ocean
, pp. 121-152
-
-
Nagata, T.1
-
48
-
-
84861929666
-
Tracking differential incorporation of dissolved organic carbon types among diverse lineages of Sargasso Sea bacterioplankton
-
Nelson, C.A., and Carlson, C.A. (2012) Tracking differential incorporation of dissolved organic carbon types among diverse lineages of Sargasso Sea bacterioplankton. Environ Microbiol 14: 1500-1516.
-
(2012)
Environ Microbiol
, vol.14
, pp. 1500-1516
-
-
Nelson, C.A.1
Carlson, C.A.2
-
49
-
-
0035461236
-
Growth patterns of two marine isolates: adaptations to substrate patchiness?
-
Pernthaler, A., Pernthaler, J., Eilers, H., and Amann, R. (2001) Growth patterns of two marine isolates: adaptations to substrate patchiness? Appl Environ Microbiol 67: 4077-4083.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 4077-4083
-
-
Pernthaler, A.1
Pernthaler, J.2
Eilers, H.3
Amann, R.4
-
50
-
-
0037224962
-
Differential growth response of colony-forming alpha- and gamma-Proteobacteria in dilution culture and nutrient addition experiments from Lake Kinneret (Israel), the eastern Mediterranean Sea, and the Gulf of Eilat
-
Pinhassi, J., and Berman, T. (2003) Differential growth response of colony-forming alpha- and gamma-Proteobacteria in dilution culture and nutrient addition experiments from Lake Kinneret (Israel), the eastern Mediterranean Sea, and the Gulf of Eilat. Appl Environ Microbiol 69: 199-211.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 199-211
-
-
Pinhassi, J.1
Berman, T.2
-
51
-
-
0033058034
-
Coupling between bacterioplankton species composition, population dynamics, and organic matter degradation
-
Pinhassi, J., Azam, F., Hemphala, J., Long, R.A., Martinez, J., Zweifel, U.L., and Hagström, Å. (1999) Coupling between bacterioplankton species composition, population dynamics, and organic matter degradation. Aquat Microb Ecol 17: 13-26.
-
(1999)
Aquat Microb Ecol
, vol.17
, pp. 13-26
-
-
Pinhassi, J.1
Azam, F.2
Hemphala, J.3
Long, R.A.4
Martinez, J.5
Zweifel, U.L.6
Hagström, A.7
-
52
-
-
33750954381
-
Seasonal changes in bacterioplankton nutrient limitation and their effects on bacterial community composition in the NW Mediterranean Sea
-
Pinhassi, J., Gomez-Consarnau, L., Alonso-Saez, L., Sala, M.M., Vidal, M., Pedros-Alio, C., and Gasol, J.M. (2006) Seasonal changes in bacterioplankton nutrient limitation and their effects on bacterial community composition in the NW Mediterranean Sea. Aquat Microb Ecol 44: 241-252.
-
(2006)
Aquat Microb Ecol
, vol.44
, pp. 241-252
-
-
Pinhassi, J.1
Gomez-Consarnau, L.2
Alonso-Saez, L.3
Sala, M.M.4
Vidal, M.5
Pedros-Alio, C.6
Gasol, J.M.7
-
53
-
-
57449118914
-
Influence of jellyfish blooms on carbon, nitrogen and phosphorus cycling and plankton production
-
Pitt, K.A., Welsh, D.T., and Condon, R.H. (2009) Influence of jellyfish blooms on carbon, nitrogen and phosphorus cycling and plankton production. Hydrobiologia 616: 133-149.
-
(2009)
Hydrobiologia
, vol.616
, pp. 133-149
-
-
Pitt, K.A.1
Welsh, D.T.2
Condon, R.H.3
-
54
-
-
77952671338
-
Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon
-
Poretsky, R.S., Sun, S.L., Mou, X.Z., and Moran, M.A. (2010) Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon. Environ Microbiol 12: 616-627.
-
(2010)
Environ Microbiol
, vol.12
, pp. 616-627
-
-
Poretsky, R.S.1
Sun, S.L.2
Mou, X.Z.3
Moran, M.A.4
-
55
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
Quince, C., Lanzen, A., Davenport, R.J., and Turnbaugh, P.J. (2011) Removing noise from pyrosequenced amplicons. BMC Bioinformatics 12: 38.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzen, A.2
Davenport, R.J.3
Turnbaugh, P.J.4
-
56
-
-
77956304094
-
Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
-
Reeder, J., and Knight, R. (2010) Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nat Methods 7: 668-669.
-
(2010)
Nat Methods
, vol.7
, pp. 668-669
-
-
Reeder, J.1
Knight, R.2
-
57
-
-
0036841522
-
Widespread N-acetyl-D-glucosamine uptake among pelagic marine bacterial and its ecological implications
-
Riemann, L., and Azam, F. (2002) Widespread N-acetyl-D-glucosamine uptake among pelagic marine bacterial and its ecological implications. Appl Environ Microbiol 68: 5554-5562.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5554-5562
-
-
Riemann, L.1
Azam, F.2
-
58
-
-
4043122560
-
Profiles of bacterial community composition and metabolic potential through a plug-flow bioreactor fed with lake water
-
Riemann, L., and Søndergaard, M. (2004) Profiles of bacterial community composition and metabolic potential through a plug-flow bioreactor fed with lake water. J Plankton Res 26: 973-978.
-
(2004)
J Plankton Res
, vol.26
, pp. 973-978
-
-
Riemann, L.1
Søndergaard, M.2
-
59
-
-
0033951021
-
Dynamics of bacterial community composition and activity during a mesocosm diatom bloom
-
Riemann, L., Steward, G.F., and Azam, F. (2000) Dynamics of bacterial community composition and activity during a mesocosm diatom bloom. Appl Environ Microbiol 66: 578-587.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 578-587
-
-
Riemann, L.1
Steward, G.F.2
Azam, F.3
-
60
-
-
83155191056
-
Net production and consumption of fluorescent colored dissolved organic matter by natural bacterial assemblages growing on marine phytoplankton exudates
-
Romera-Castillo, C., Sarmento, H., Alvarez-Salgado, X.A., Gasol, J.M., and Marrase, C. (2011) Net production and consumption of fluorescent colored dissolved organic matter by natural bacterial assemblages growing on marine phytoplankton exudates. Appl Environ Microbiol 77: 7490-7498.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7490-7498
-
-
Romera-Castillo, C.1
Sarmento, H.2
Alvarez-Salgado, X.A.3
Gasol, J.M.4
Marrase, C.5
-
61
-
-
1842421812
-
Pelagic food web structure and carbon budget in the northern Baltic Sea: potential importance of terrigenous carbon
-
Sandberg, J., Andersson, A., Johansson, S., and Wikner, J. (2004) Pelagic food web structure and carbon budget in the northern Baltic Sea: potential importance of terrigenous carbon. Mar Ecol Prog Ser 268: 13-29.
-
(2004)
Mar Ecol Prog Ser
, vol.268
, pp. 13-29
-
-
Sandberg, J.1
Andersson, A.2
Johansson, S.3
Wikner, J.4
-
62
-
-
0035374573
-
Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir
-
Simek, K., Pernthaler, J., Weinbauer, M.G., Hornak, K., Dolan, J.R., Nedoma, J., etal. (2001) Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl Environ Microbiol 67: 2723-2733.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2723-2733
-
-
Simek, K.1
Pernthaler, J.2
Weinbauer, M.G.3
Hornak, K.4
Dolan, J.R.5
Nedoma, J.6
-
63
-
-
0028794437
-
Bacterial mediation of carbon fluxes during A diatom bloom in A mesocosm
-
Smith, D.C., Steward, G.F., Long, R.A., and Azam, F. (1995) Bacterial mediation of carbon fluxes during A diatom bloom in A mesocosm. Deep Sea Res II 42: 75-97.
-
(1995)
Deep Sea Res II
, vol.42
, pp. 75-97
-
-
Smith, D.C.1
Steward, G.F.2
Long, R.A.3
Azam, F.4
-
64
-
-
0029158612
-
A cross-system analysis of labile dissolved organic-carbon
-
Søndergaard, M., and Middelboe, M. (1995) A cross-system analysis of labile dissolved organic-carbon. Mar Ecol Prog Ser 118: 283-294.
-
(1995)
Mar Ecol Prog Ser
, vol.118
, pp. 283-294
-
-
Søndergaard, M.1
Middelboe, M.2
-
65
-
-
79951586888
-
Oleibacter marinus gen. nov., sp. nov., a bacterium that degrades petroleum aliphatic hydrocarbons in a tropical marine environment
-
Teramoto, M., Ohuchi, M., Hatmanti, A., Darmayati, Y., Widyastuti, Y., Harayama, S., and Fukunaga, Y. (2011) Oleibacter marinus gen. nov., sp. nov., a bacterium that degrades petroleum aliphatic hydrocarbons in a tropical marine environment. Int J Syst Evol Microbiol 61: 375-380.
-
(2011)
Int J Syst Evol Microbiol
, vol.61
, pp. 375-380
-
-
Teramoto, M.1
Ohuchi, M.2
Hatmanti, A.3
Darmayati, Y.4
Widyastuti, Y.5
Harayama, S.6
Fukunaga, Y.7
-
66
-
-
79960375939
-
Effect of bacterial community dynamics on DOC seasonal changes in the north-western Mediterranean Sea
-
Trabelsi, A., and Rassoulzadegan, F. (2011) Effect of bacterial community dynamics on DOC seasonal changes in the north-western Mediterranean Sea. J Plankton Res 33: 1249-1262.
-
(2011)
J Plankton Res
, vol.33
, pp. 1249-1262
-
-
Trabelsi, A.1
Rassoulzadegan, F.2
-
67
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., Garrity, G.M., Tiedje, J.M., and Cole, J.R. (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
68
-
-
33745110619
-
The response of Vibrio- and Rhodobacter-related populations of the NW Mediterranean Sea to additions of dissolved organic matter, phages, or dilution
-
Weinbauer, M.G., Christen, R., and Hofle, M.G. (2006) The response of Vibrio- and Rhodobacter-related populations of the NW Mediterranean Sea to additions of dissolved organic matter, phages, or dilution. Microb Ecol 51: 336-344.
-
(2006)
Microb Ecol
, vol.51
, pp. 336-344
-
-
Weinbauer, M.G.1
Christen, R.2
Hofle, M.G.3
-
69
-
-
78149272458
-
Genomic and functional adaptation in surface ocean planktonic prokaryotes
-
Yooseph, S., Nealson, K.H., Rusch, D.B., McCrow, J.P., Dupont, C.L., Kim, M., etal. (2010) Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature 468: 60-66.
-
(2010)
Nature
, vol.468
, pp. 60-66
-
-
Yooseph, S.1
Nealson, K.H.2
Rusch, D.B.3
McCrow, J.P.4
Dupont, C.L.5
Kim, M.6
|