Isothermal amplification method for next-generation sequencing

Proceedings of the National Academy of Sciences of the United States of America

Volumn 110, Issue 35, 2013, Pages 14320-14323

  Ma, Zhaochun ^a   Lee, Raymond W ^a   Li, Bin ^a   Kenney, Paul ^a   Wang, Yufang ^a   Erikson, Jonathan ^a   Goyal, Swati ^a   Lao, Kaiqin ^a  

^a Life Technologies   (United States)

Author keywords

DNA breathing; Forming colonies; Genome; In situ PCR; Polony

Indexed keywords

DNA; POLYADENYLIC ACID;

ARTICLE; COST EFFECTIVENESS ANALYSIS; DNA CROSS LINKING; DNA LIBRARY; DNA TEMPLATE; GENE AMPLIFICATION; GENE SEQUENCE; MELTING POINT; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TEMPERATURE; PH;

HYDROGEN-ION CONCENTRATION;

EID: 84883429877     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1311334110     Document Type: Article

References (17)

1. Liu L, et al. (2012) Comparison of next-generation sequencing systems. J Biomed Biotechnol 2012:251364.
2. Mardis ER (2011) A decade's perspective on DNA sequencing technology. Nature 470(7333):198-203.
3. Mitra RD, Church GM (1999) In situ localized amplification and contact replication of many individual DNA molecules. Nucleic Acids Res 27(24):e34.
4. Mitra RD, et al. (2003) Digital genotyping and haplotyping with polymerase colonies. Proc Natl Acad Sci USA 100(10):5926-5931.
5. Shendure J, et al. (2005) Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309(5741):1728-1732.
6. Margulies M, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437(7057):376-380.
7. Valouev A, et al. (2008) A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res 18(7): 1051-1063.
8. Rothberg JM, et al. (2011) An integrated semiconductor device enabling non-optical genome sequencing. Nature 475(7356):348-352.
9. Bentley DR, et al. (2008) Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456(7218):53-59.
10. Liu X, et al. (2007) Preparation of single-stranded templates for nucleic acid sequencing. PCT Int Appl, WO2006-GB2687.
11. Fedurco M, Romieu A, Williams S, Lawrence I, Turcatti G (2006) BTA, a novel reagent for DNA attachment on glass and efficient generation of solid-phase amplified DNA colonies. Nucleic Acids Res 34(3):e22.
12. Schroth GP, Lloyd D, Zhang L (2007) Isothermal solid-phase amplification methods for creating clonal single nucleic acid molecule arrays on a planar surface using universal primers. PCT Int Appl, WO2007107710A1.
13. Dressman D, Yan H, Traverso G, Kinzler KW, Vogelstein B (2003) Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations. Proc Natl Acad Sci USA 100(15):8817-8822.
14. Drmanac R, et al. (2010) Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays. Science 327(5961):78-81.
15. Altan-Bonnet G, Libchaber A, Krichevsky O (2003) Bubble dynamics in doublestranded DNA. Phys Rev Lett 90(13):138101.
16. Fujimoto K, Konishi-Hiratsuka K, Sakamoto T, Yoshimura Y (2010) Site-specific cytosine to uracil transition by using reversible DNA photo-crosslinking. ChemBioChem 11(12):1661-1664.
17. Yoshimura Y, Fujimoto K (2008) Ultrafast reversible photo-cross-linking reaction: Toward in situ DNA manipulation. Org Lett 10(15):3227-3230.