-
1
-
-
84874251121
-
Polymorphism and eivergence in two willow species, Salix viminalis L
-
Berlin, S., J. Fogelqvist, M. Lascoux, U. Lagercrantz, and A. C. Rönnberg- Wästljung, 2011 Polymorphism and eivergence in two willow species, Salix viminalis L. and Salix schwerinii E. Wolf. G3 (Bethesda) 1: 387-400.
-
(2011)
and Salix schwerinii E. Wolf. G3 (Bethesda)
, vol.1
, pp. 387-400
-
-
Berlin, S.1
Fogelqvist, J.2
Lascoux, M.3
Lagercrantz, U.4
Rönnberg-Wästljung, A.C.5
-
2
-
-
67650795862
-
The distribution of late-Quaternary woody taxa in northern Eurasia: evidence from a new macrofossil database
-
Binney, H. A., K. J. Willis, M. E. Edwards, S. A. Bhagwat, P. M. Anderson et al., 2009 The distribution of late-Quaternary woody taxa in northern Eurasia: evidence from a new macrofossil database. Quat. Sci. Rev. 28: 2445-2464.
-
(2009)
Quat. Sci. Rev.
, vol.28
, pp. 2445-2464
-
-
Binney, H.A.1
Willis, K.J.2
Edwards, M.E.3
Bhagwat, S.A.4
Anderson, P.M.5
-
3
-
-
6344279807
-
Nucleotide diversity and linkage disequilibrium in loblolly pine
-
Brown, G. R., G. P. Gill, R. J. Kuntz, C. H. Langley, and D. B. Neale, 2004 Nucleotide diversity and linkage disequilibrium in loblolly pine. Proc. Natl. Acad. Sci. USA 101: 15255-15260.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 15255-15260
-
-
Brown, G.R.1
Gill, G.P.2
Kuntz, R.J.3
Langley, C.H.4
Neale, D.B.5
-
4
-
-
73349130751
-
New insights on the speciation history and nucleotide diversity of three boreal spruce species and a tertiary relict
-
Chen, J., T. Källman, N. Gyllenstrand, and M. Lascoux, 2010 New insights on the speciation history and nucleotide diversity of three boreal spruce species and a tertiary relict. Heredity 104: 3-14.
-
(2010)
Heredity
, vol.104
, pp. 3-14
-
-
Chen, J.1
Källman, T.2
Gyllenstrand, N.3
Lascoux, M.4
-
5
-
-
84863865175
-
Disentangling the roles of history and local selection in shaping clinal variation of allele frequencies and gene expression in Norway spruce (Picea abies)
-
Chen, J., T. Källman, X. Ma, N. Gyllenstrand, G. Zaina et al., 2012 Disentangling the roles of history and local selection in shaping clinal variation of allele frequencies and gene expression in Norway spruce (Picea abies). Genetics 191: 865-881.
-
(2012)
Genetics
, vol.191
, pp. 865-881
-
-
Chen, J.1
Källman, T.2
Ma, X.3
Gyllenstrand, N.4
Zaina, G.5
-
6
-
-
84862792463
-
Influence of finite-sites mutation, population subdivision and sampling schemes on patterns of nucleotide polymorphism for species with molecular hyperdiversity
-
Cutter, A. D., G. X. Wang, H. Ai, and Y. Peng, 2012 Influence of finite-sites mutation, population subdivision and sampling schemes on patterns of nucleotide polymorphism for species with molecular hyperdiversity. Mol. Ecol. 21: 1345-1359.
-
(2012)
Mol. Ecol.
, vol.21
, pp. 1345-1359
-
-
Cutter, A.D.1
Wang, G.X.2
Ai, H.3
Peng, Y.4
-
7
-
-
21244479740
-
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
-
Evanno, G., S. Regnaut, and J. Goudet, 2005 Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611-2620.
-
(2005)
Mol. Ecol.
, vol.14
, pp. 2611-2620
-
-
Evanno, G.1
Regnaut, S.2
Goudet, J.3
-
8
-
-
0031978181
-
Base-calling of automated sequencer traces using phred
-
Ewing, B., and P. Green, 1998 Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8: 186-194.
-
(1998)
II. Error probabilities. Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
9
-
-
0031955518
-
Base-calling of automated sequencer traces using phred
-
Ewing, B., L. Hillier, M. C. Wendl, and P. Green, 1998 Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185.
-
(1998)
I. Accuracy assessment. Genome Res.
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
10
-
-
77953032930
-
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows.
-
Excoffier, L., and H. E. L. Lischer, 2010 Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Res. 10: 564-567.
-
(2010)
Mol. Ecol. Res.
, vol.10
, pp. 564-567
-
-
Excoffier, L.1
Lischer, H.E.L.2
-
11
-
-
33845768012
-
Recombination: an underappreciated factor in the evolution of plant genomes
-
Gaut, B. S., S. I. Wright, C. Rizzon, J. Dvorak, and L. K. Andersson, 2007 Recombination: an underappreciated factor in the evolution of plant genomes. Nat. Rev. Genet. 8: 77-84.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 77-84
-
-
Gaut, B.S.1
Wright, S.I.2
Rizzon, C.3
Dvorak, J.4
Andersson, L.K.5
-
12
-
-
33645219360
-
DNA sequence variation and selection of tag singlenucleotide polymorphisms at candidate genes for dought-stress response in Pinus taeda L
-
González-Martínez, S. C., E. Ersoz, G. R. Brown, N. C. Wheeler, and D. B. Neale, 2006 DNA sequence variation and selection of tag singlenucleotide polymorphisms at candidate genes for dought-stress response in Pinus taeda L. Genetics 172: 1915-1926.
-
(2006)
Genetics
, vol.172
, pp. 1915-1926
-
-
González-Martínez, S.C.1
Ersoz, E.2
Brown, G.R.3
Wheeler, N.C.4
Neale, D.B.5
-
13
-
-
0031955116
-
Consed: a graphical tool for sequence finishing
-
Gordon, D., C. Abajian, and P. Green, 1998 Consed: a graphical tool for sequence finishing. Genome Res. 8: 195-202.
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
14
-
-
54449091448
-
GSDS: a gene structure display server
-
Guo, A. Y., Q. H. Zhu, X. Chen, and J. C. Luo, 2007 GSDS: a gene structure display server. Yi Chuan 29: 1023-1026.
-
(2007)
Yi Chuan
, vol.29
, pp. 1023-1026
-
-
Guo, A.Y.1
Zhu, Q.H.2
Chen, X.3
Luo, J.C.4
-
15
-
-
0035711599
-
Mutation and linkage disequilibrium in human mtDNA
-
Hedrick, P. W., and S. Kumar, 2001 Mutation and linkage disequilibrium in human mtDNA. Eur. J. Hum. Genet. 9: 969-972.
-
(2001)
Eur. J. Hum. Genet.
, vol.9
, pp. 969-972
-
-
Hedrick, P.W.1
Kumar, S.2
-
16
-
-
33845746244
-
Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L. Karst].
-
Heuertz, M., E. De Paoli, T. Källman, H. Larsson, I. Jurman et al., 2006 Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) . Karst]. Genetics 174: 2095-2105.
-
(2006)
Genetics
, vol.174
, pp. 2095-2105
-
-
Heuertz, M.1
De Paoli, E.2
Källman, T.3
Larsson, H.4
Jurman, I.5
-
17
-
-
33646226097
-
Linkage disequilibrium in finite populations
-
Hill, W. G., and A. Robertson, 1968 Linkage disequilibrium in finite populations. Theor. Appl. Genet. 38: 226-231.
-
(1968)
Theor. Appl. Genet.
, vol.38
, pp. 226-231
-
-
Hill, W.G.1
Robertson, A.2
-
18
-
-
0023959349
-
Variances and covariances of squared linkage disequilibria in finite populations
-
Hill, W. G., and B. S. Weir, 1988 Variances and covariances of squared linkage disequilibria in finite populations. Theor. Popul. Biol. 33: 54-78.
-
(1988)
Theor. Popul. Biol.
, vol.33
, pp. 54-78
-
-
Hill, W.G.1
Weir, B.S.2
-
19
-
-
77956566380
-
Postglacial history of a widespread conifer produces inverse clines in selective neutrality tests
-
Holliday, J. A., M. Yuen, K. Ritland, and S. N. Aitken, 2010 Postglacial history of a widespread conifer produces inverse clines in selective neutrality tests. Mol. Ecol. 19: 3857-3864.
-
(2010)
Mol. Ecol.
, vol.19
, pp. 3857-3864
-
-
Holliday, J.A.1
Yuen, M.2
Ritland, K.3
Aitken, S.N.4
-
20
-
-
34547861256
-
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
-
Jakobsson, M., and N. A. Rosenberg, 2007 CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806.
-
(2007)
Bioinformatics
, vol.23
, pp. 1801-1806
-
-
Jakobsson, M.1
Rosenberg, N.A.2
-
21
-
-
77649176976
-
The contribution of recombination to heterozygosity differs among plant evolutionary lineages and life-forms
-
Jaramillo-Correa, J. P., M. Verdú, and S. C. González-Martínez, 2010 The contribution of recombination to heterozygosity differs among plant evolutionary lineages and life-forms. BMC Evol. Biol. 10: 22.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 22
-
-
Jaramillo-Correa, J.P.1
Verdú, M.2
González-Martínez, S.C.3
-
22
-
-
84883251357
-
Adaptive evolution and demographic history of Norway spruce (Picea abies)
-
Ph.D. Thesis, Uppsala University
-
Källman, T., 2009 Adaptive evolution and demographic history of Norway spruce (Picea abies). Ph.D. Thesis, Uppsala University.
-
(2009)
-
-
Källman, T.1
-
23
-
-
79961187177
-
Evolution of the PEBP gene family in plants: functional diversification in seed plant evolution
-
Karlgren, A., N. Gyllenstrand, T. Källman, J. F. Sundström, D. Moore et al., 2011 Evolution of the PEBP gene family in plants: functional diversification in seed plant evolution. Plant Physiol. 156: 1967-1977.
-
(2011)
Plant Physiol.
, vol.156
, pp. 1967-1977
-
-
Karlgren, A.1
Gyllenstrand, N.2
Källman, T.3
Sundström, J.F.4
Moore, D.5
-
24
-
-
33645130943
-
Nucleotide diversity and linkage disequilibrium in cold-hardiness-and wood quality-related candidate genes in Douglas fir
-
Krutovsky, K. V., and D. B. Neale, 2005 Nucleotide diversity and linkage disequilibrium in cold-hardiness-and wood quality-related candidate genes in Douglas fir. Genetics 171: 2029-2041.
-
(2005)
Genetics
, vol.171
, pp. 2029-2041
-
-
Krutovsky, K.V.1
Neale, D.B.2
-
25
-
-
84856212134
-
Association mapping for growth, straightness and wood chemistry traits in the Pinus pinaster Aquitaine breeding population
-
Lepoittevin, C., L. Harvengt, C. Plomion, and P. Garnier-Gere, 2012 Association mapping for growth, straightness and wood chemistry traits in the Pinus pinaster Aquitaine breeding population. Tree Genet. Genomes 8: 113-126.
-
(2012)
Tree Genet. Genomes
, vol.8
, pp. 113-126
-
-
Lepoittevin, C.1
Harvengt, L.2
Plomion, C.3
Garnier-Gere, P.4
-
27
-
-
65649117685
-
DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
-
Librado, P., and J. Rozas, 2009 DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
28
-
-
80052748796
-
Nucleotide diversity and linkage disequilibrium in Populus nigra cinnamyl alcohol dehydrogenase (CAD4) gene
-
Marroni, F., S. Pinosio, G. Zaina, F. Fogolari, N. Felice et al., 2011 Nucleotide diversity and linkage disequilibrium in Populus nigra cinnamyl alcohol dehydrogenase (CAD4) gene. Tree Genet. Genomes 7: 1011-1023
-
(2011)
Tree Genet. Genomes
, vol.7
, pp. 1011-1023
-
-
Marroni, F.1
Pinosio, S.2
Zaina, G.3
Fogolari, F.4
Felice, N.5
-
29
-
-
0035544521
-
What do patterns of genetic variability reveal about mitochondrial recombination?
-
McVean, G A., 2001 What do patterns of genetic variability reveal about mitochondrial recombination?. Heredity 87: 613-620.
-
(2001)
Heredity
, vol.87
, pp. 613-620
-
-
McVean, G.A.1
-
30
-
-
0036199914
-
A coalescent-based method for detecting and estimating recombination from gene sequences
-
McVean, G. A., P. Awadalla, and P. Fearnhead, 2002 A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160: 1231-1241.
-
(2002)
Genetics
, vol.160
, pp. 1231-1241
-
-
McVean, G.A.1
Awadalla, P.2
Fearnhead, P.3
-
31
-
-
84858185558
-
Extended linkage disequilibrium in noncoding regions in a conifer, Cryptomeria japonica
-
Moritsuka, E., Y. Hisataka, M. Tamura, K. Uchiyama, A. Watanabe et al., 2012 Extended linkage disequilibrium in noncoding regions in a conifer, Cryptomeria japonica. Genetics 190: 1145-1148.
-
(2012)
Genetics
, vol.190
, pp. 1145-1148
-
-
Moritsuka, E.1
Hisataka, Y.2
Tamura, M.3
Uchiyama, K.4
Watanabe, A.5
-
32
-
-
77954460187
-
Molecular evolution of regulatory genes in spruces from different species and continents: heterogeneous patterns of linkage disequilibrium and selection but correlated recent demographic changes
-
Namroud, M.-C., C. Guillet-Claude, J. Mackay, N. Isabel, and J. Bousquet, 2010 Molecular evolution of regulatory genes in spruces from different species and continents: heterogeneous patterns of linkage disequilibrium and selection but correlated recent demographic changes. J. Mol. Evol. 70: 371-386.
-
(2010)
J. Mol. Evol.
, vol.70
, pp. 371-386
-
-
Namroud, M.C.1
Guillet-Claude, C.2
Mackay, J.3
Isabel, N.4
Bousquet, J.5
-
33
-
-
3042745450
-
Association genetics of complex traits in conifers
-
Neale, D. B., and O. Savolainen, 2004 Association genetics of complex traits in conifers. Trends Pld O. Savolainen 9: 325-330.
-
(2004)
Trends Plant Sci.
, vol.9
, pp. 325-330
-
-
Neale, D.B.1
Savolainen, O.2
-
34
-
-
84863541347
-
An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people
-
Nelson, M. R., D. Wegmann, M. G. Ehm, D. Kessner, P. St Jean et al., 2012 An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people. Science 337: 100-104.
-
(2012)
Science
, vol.337
, pp. 100-104
-
-
Nelson, M.R.1
Wegmann, D.2
Ehm, M.G.3
Kessner, D.4
Jean, P.5
-
35
-
-
84857231879
-
The heterogeneous levels of linkage disequilibrium in white spruce genes and comparative analysis with other conifers
-
Pavy, N., M. C. Namroud, F. Gagnon, N. Isabel, and J. Bousquet, 2012 The heterogeneous levels of linkage disequilibrium in white spruce genes and comparative analysis with other conifers. Heredity 108: 273-284.
-
(2012)
Heredity
, vol.108
, pp. 273-284
-
-
Pavy, N.1
Namroud, M.C.2
Gagnon, F.3
Isabel, N.4
Bousquet, J.5
-
36
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard, J. K., M. Stephens, and P. Donnelly, 2000 Inference of population structure using multilocus genotype data. Genetics 155: 945-959. Pyhäjärvi, T., M. R. García-Gil, T. KnÜrr, M. Mikkonen, W. Wachowiak et al., 2007 Demographic history has influenced nucleotide diversity in European Pinus sylvestris populations. Genetics 177: 1713-1724.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
37
-
-
37249019973
-
Demographic history has influenced nucleotide diversity in European Pinus sylvestris populations
-
Pyhäjärvi, T., M. R. García-Gil, T. Knürr, M. Mikkonen, W. Wachowiak et al., 2007 Demographic history has influenced nucleotide diversity in European Pinus sylvestris populations. Genetics 177: 1713-1724.
-
(2007)
Genetics
, vol.177
, pp. 1713-1724
-
-
Pyhäjärvi, T.1
García-Gil, M.R.2
Knürr, T.3
Mikkonen, M.4
Wachowiak, W.5
-
38
-
-
79953027163
-
Revisiting protein heterozygosity in plants -nucleotide diversity in allozyme coding genes of conifer Pinus sylvestris
-
Pyhäjärvi, T., S. T. Kujala, and O. Savolainen, 2011 Revisiting protein heterozygosity in plants -nucleotide diversity in allozyme coding genes of conifer Pinus sylvestris. Tree Genet. Genomes 7: 385-397.
-
(2011)
Tree Genet. Genomes
, vol.7
, pp. 385-397
-
-
Pyhäjärvi, T.1
Kujala, S.T.2
Savolainen, O.3
-
39
-
-
84863304598
-
R: A Language and Environment for Statistical Computing
-
R Development Core Team, Available at:Accessed: March 18, 2013.
-
R Development Core Team, 2012 R: A Language and Environment for Statistical Computing. Available at: http://www.R-project.org. Accessed: March 18, 2013.
-
(2012)
-
-
-
40
-
-
67849119548
-
The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations
-
Städler, T., B. Haubold, C. Merino, W. Stephan, and P. Pfaffelhuber, 2009 The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations. Genetics 182: 205-216.
-
(2009)
Genetics
, vol.182
, pp. 205-216
-
-
Städler, T.1
Haubold, B.2
Merino, C.3
Stephan, W.4
Pfaffelhuber, P.5
-
41
-
-
84883592764
-
Impact of sampling schemes on demographic inference: an empirical study in two species with different mating systems and demographic histories
-
St. Onge, K., A. E. Palmé, S. I. Wright, and M. Lascoux, 2012 Impact of sampling schemes on demographic inference: an empirical study in two species with different mating systems and demographic histories. G3 (Bethesda) 2: 803-814.
-
(2012)
G3 (Bethesda)
, vol.2
, pp. 803-814
-
-
Onge, K.1
Palmé, A.E.2
Wright, S.I.3
Lascoux, M.4
-
42
-
-
0027986930
-
Decay of linkage disequilibrium in a finite island model
-
Tachida, H., 1994 Decay of linkage disequilibrium in a finite island model. Genet. Res. 64: 137-144.
-
(1994)
Genet. Res.
, vol.64
, pp. 137-144
-
-
Tachida, H.1
-
43
-
-
84864039639
-
Linkage disequilibrium in a population undergoing periodic fragmentation and admixture
-
Tachida, H., 2012 Linkage disequilibrium in a population undergoing periodic fragmentation and admixture. Genes Genet. Syst. 87: 125-135.
-
(2012)
Genes Genet. Syst.
, vol.87
, pp. 125-135
-
-
Tachida, H.1
-
44
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA Polymorphism
-
Tajima, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA Polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
45
-
-
0344464730
-
libsequence: a C++ class library for evolutionary genetic analysis
-
Thornton, K., 2003 libsequence: a C++ class library for evolutionary genetic analysis. Bioinformatics 19: 2325-2327.
-
(2003)
Bioinformatics
, vol.19
, pp. 2325-2327
-
-
Thornton, K.1
-
46
-
-
67349120042
-
Combined analysis of nuclear and mitochondrial markers provide new insight into the genetic structure of North European (Picea abies)
-
Tollefsrud, M. M., J. H. Sonstebo, C. Brochmann, O. Johnsen, T. Skroppa et al., 2009 Combined analysis of nuclear and mitochondrial markers provide new insight into the genetic structure of North European (Picea abies). Heredity 102: 549-562.
-
(2009)
Heredity
, vol.102
, pp. 549-562
-
-
Tollefsrud, M.M.1
Sonstebo, J.H.2
Brochmann, C.3
Johnsen, O.4
Skroppa, T.5
-
47
-
-
79955045330
-
Scattered late-glacial and early Holocene tree populations as dispersal nuclei for forest development in north-eastern European Russia
-
Väliranta, M., A. Kaakinen, P. Kuhry, S. Kultti, J. S. Salonen et al., 2011 Scattered late-glacial and early Holocene tree populations as dispersal nuclei for forest development in north-eastern European Russia. J. Biogeogr. 38: 922-932.
-
(2011)
J. Biogeogr.
, vol.38
, pp. 922-932
-
-
Väliranta, M.1
Kaakinen, A.2
Kuhry, P.3
Kultti, S.4
Salonen, J.S.5
-
48
-
-
29444451610
-
Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes
-
USA
-
Voight, B. F., A. M. Adams, L. A. Frisse, Y. Qian, R. R. Hudson et al., 2005 Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes. Proc. Natl. Acad. Sci. USA 102: 18508-18513.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 18508-18513
-
-
Voight, B.F.1
Adams, A.M.2
Frisse, L.A.3
Qian, Y.4
Hudson, R.R.5
-
49
-
-
33751342650
-
Statistical tests for detecting positive selection by utilizing high-frequency variants
-
Zeng, K., Y. X. Fu, S. Shi, and C. I. Wu, 2006 Statistical tests for detecting positive selection by utilizing high-frequency variants. Genetics 174: 1431-1439.
-
(2006)
Genetics
, vol.174
, pp. 1431-1439
-
-
Zeng, K.1
Fu, Y.X.2
Shi, S.3
Wu, C.I.4
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