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Volumn 3, Issue 8, 2013, Pages 1253-1260

Identification of null alleles and deletions from snp genotypes for an intercross between domestic and wild chickens

Author keywords

Chicken; Deletion; Null allele

Indexed keywords

MARKER; PROTEIN;

EID: 84883213947     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.113.006643     Document Type: Article
Times cited : (11)

References (22)
  • 1
    • 0037350268 scopus 로고    scopus 로고
    • A global search reveals epistatic interaction between QTL for early growth in the chicken
    • Carlborg, ö., S. Kerje, K. Schütz, L. Jacobsson, P. Jensen et al., 2003 A global search reveals epistatic interaction between QTL for early growth in the chicken. Genome Res. 13: 413-421.
    • (2003) Genome Res. , vol.13 , pp. 413-421
    • Carlborg, ö.1    Kerje, S.2    Schütz, K.3    Jacobsson, L.4    Jensen, P.5
  • 3
    • 77950461601 scopus 로고    scopus 로고
    • Origins and functional impact of copy number variation in the human genome
    • Conrad, D. F., D. Pinto, R. Redon, L. Feuk, O. Gokcumen et al., 2010 Origins and functional impact of copy number variation in the human genome. Nature 464: 704-712.
    • (2010) Nature , vol.464 , pp. 704-712
    • Conrad, D.F.1    Pinto, D.2    Redon, R.3    Feuk, L.4    Gokcumen, O.5
  • 4
    • 77950405093 scopus 로고    scopus 로고
    • Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls
    • Craddock, N., M. E. Hurles, N. Cardin, R. D. Pearson, V. Plagnol et al., 2010 Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature 464: 713-720.
    • (2010) Nature , vol.464 , pp. 713-720
    • Craddock, N.1    Hurles, M.E.2    Cardin, N.3    Pearson, R.D.4    Plagnol, V.5
  • 5
    • 84855257779 scopus 로고    scopus 로고
    • A Complex genomic rearrangement involving the Endothelin 3 locus causes dermal hyperpigmentation in the chicken
    • Dorshorst, B., A.-M. Molin, C.-J. Rubin, A. M. Johansson, L. Strömstedt et al., 2011 A Complex genomic rearrangement involving the Endothelin 3 locus causes dermal hyperpigmentation in the chicken. PLoS Genet. 7: e1002412.
    • (2011) PLoS Genet. , vol.7
    • Dorshorst, B.1    Molin, A.M.2    Rubin, C.J.3    Johansson, A.M.4    Strömstedt, L.5
  • 6
    • 80755187820 scopus 로고    scopus 로고
    • Human copy number variation and complex disease genetics
    • Girirajan, S., C. D. Campbell, and E. E. Eichler, 2011 Human copy number variation and complex disease genetics. Annu. Rev. Genet. 45: 203-206.
    • (2011) Annu. Rev. Genet. , vol.45 , pp. 203-206
    • Girirajan, S.1    Campbell, C.D.2    Eichler, E.E.3
  • 7
    • 61849153558 scopus 로고    scopus 로고
    • A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate
    • Groenen, M. A., P. Wahlberg, M. Folglio, H. H. Cheng, H.-J. Megens et al., 2009 A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res. 19: 510-519.
    • (2009) Genome Res. , vol.19 , pp. 510-519
    • Groenen, M.A.1    Wahlberg, P.2    Folglio, M.3    Cheng, H.H.4    Megens, H.J.5
  • 8
    • 79957628638 scopus 로고    scopus 로고
    • The development and characterization of a 60K SNP chip for chicken
    • Groenen, M. A., H. J. Megens, Y. Zare, W. C. Warren, L. W. Hillier et al., 2011 The development and characterization of a 60K SNP chip for chicken. BMC Genomics 12(1): 274.
    • (2011) BMC Genomics , vol.12 , Issue.1 , pp. 274
    • Groenen, M.A.1    Megens, H.J.2    Zare, Y.3    Warren, W.C.4    Hillier, L.W.5
  • 9
    • 79952628807 scopus 로고    scopus 로고
    • The Dark brown plumage color in chickens is caused by an 8.3-kb deletion upstream of SOX10
    • Gunnarsson, U., S. Kerje, B. Bed'hom, A. S. Sahlqvist, O. Ekwall et al., 2011 The Dark brown plumage color in chickens is caused by an 8.3-kb deletion upstream of SOX10. Pigment Cell Melanoma Res. 24: 268-274.
    • (2011) Pigment Cell Melanoma Res , vol.24 , pp. 268-274
    • Gunnarsson, U.1    Kerje, S.2    Bed'hom, B.3    Sahlqvist, A.S.4    Ekwall, O.5
  • 10
    • 84864070164 scopus 로고    scopus 로고
    • The Rosecomb mutation in chickens constitutes a structural rearrangement causing both altered comb morphology and defective sperm motility
    • Imsland, F., C. Feng, H. Boije, B. Bed'hom, V. Fillon et al., 2012 The Rosecomb mutation in chickens constitutes a structural rearrangement causing both altered comb morphology and defective sperm motility. PLoS Genet. 8: e1002775.
    • (2012) PLoS Genet. , vol.8
    • Imsland, F.1    Feng, C.2    Boije, H.3    Bed'hom, B.4    Fillon, V.5
  • 11
    • 0041488856 scopus 로고    scopus 로고
    • The twofold difference in adult size between the red junglefowl and White Leghorn chickens is largely explained by a limited number of QTLs
    • Kerje, S., ö. Carlborg, L. Jacobsson, K. Schütz, C. Hartmann et al., 2003 The twofold difference in adult size between the red junglefowl and White Leghorn chickens is largely explained by a limited number of QTLs. Anim. Genet. 34: 264-274.
    • (2003) Anim. Genet. , vol.34 , pp. 264-274
    • Kerje, S.1    Carlborg, ö.2    Jacobsson, L.3    Schütz, K.4    Hartmann, C.5
  • 12
    • 79551526853 scopus 로고    scopus 로고
    • Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries
    • Kerstens, H. H, R. P. Crooijmans, B. W. Dibbits, A. Vereijken, R. Okimoto et al., 2011 Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries. BMC Genomics. 12: 94.
    • (2011) BMC Genomics. , vol.12 , pp. 94
    • Kerstens, H.H.1    Crooijmans, R.P.2    Dibbits, B.W.3    Vereijken, A.4    Okimoto, R.5
  • 13
    • 35348960370 scopus 로고    scopus 로고
    • Simultaneous discovery and testing of deletions for disease association in SNP genotyping studies
    • Kohler, J. R., and D. J. Cutler, 2007 Simultaneous discovery and testing of deletions for disease association in SNP genotyping studies. Am. J. Hum. Genet. 81: 684-699.
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 684-699
    • Kohler, J.R.1    Cutler, D.J.2
  • 14
    • 52949085789 scopus 로고    scopus 로고
    • Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs
    • Korn, J. M., F. G. Kuruvilla, S. A. McCarroll, A. Wysoker, J. Nemesh et al., 2008 Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. Nat. Genet. 40: 1253-1260.
    • (2008) Nat. Genet. , vol.40 , pp. 1253-1260
    • Korn, J.M.1    Kuruvilla, F.G.2    McCarroll, S.A.3    Wysoker, A.4    Nemesh, J.5
  • 16
    • 50449091647 scopus 로고    scopus 로고
    • Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease
    • McCarroll, S. A., A. Huett, P. Kuballa, S. D. Chilewski, A. Landry et al., 2008a Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease. Nat. Genet. 40: 1107-1112.
    • (2008) Nat. Genet. , vol.40 , pp. 1107-1112
    • McCarroll, S.A.1    Huett, A.2    Kuballa, P.3    Chilewski, S.D.4    Landry, A.5
  • 17
    • 52949141845 scopus 로고    scopus 로고
    • Integrated detection and population-genetic analysis of SNPs and copy number variation
    • McCarroll, S. A., F. G. Kuruvilla, J. M. Korn, S. Cawley, J. Nemesh et al., 2008b Integrated detection and population-genetic analysis of SNPs and copy number variation. Nat. Genet. 40: 1166-1174.
    • (2008) Nat. Genet. , vol.40 , pp. 1166-1174
    • McCarroll, S.A.1    Kuruvilla, F.G.2    Korn, J.M.3    Cawley, S.4    Nemesh, J.5
  • 18
    • 84864602429 scopus 로고    scopus 로고
    • The chicken frizzle feather is due to an a-keratin (KRT75) mutation that causes a defective rachis
    • Ng, C. S., P. Wu, J. Foley, A. Foley, M. L. McDonald et al., 2012 The chicken frizzle feather is due to an a-keratin (KRT75) mutation that causes a defective rachis. PLoS Genet. 8: e1002748.
    • (2012) PLoS Genet. , vol.8
    • Ng, C.S.1    Wu, P.2    Foley, J.3    Foley, A.4    McDonald, M.L.5
  • 19
    • 77950080740 scopus 로고    scopus 로고
    • Whole-genome resequencing reveals loci under selection during chicken domestication
    • Rubin, C.-J., M.-C. Zody, J. Eriksson, J. R. Meadows, E. Sherwood et al., 2010 Whole-genome resequencing reveals loci under selection during chicken domestication. Nature 464: 587-591.
    • (2010) Nature , vol.464 , pp. 587-591
    • Rubin, C.J.1    Zody, M.C.2    Eriksson, J.3    Meadows, J.R.4    Sherwood, E.5
  • 20
    • 0942279605 scopus 로고    scopus 로고
    • Major growth QTLs in fowl are related to fearful behavior: possible genetic links between fear responses and production traits in a red junglefowl x White Leghorn intercross
    • Schutz, K. E., S. Kerje, L. Jacobsson, B. Forkman, ö. Carlborg et al., 2004 Major growth QTLs in fowl are related to fearful behavior: possible genetic links between fear responses and production traits in a red junglefowl x White Leghorn intercross. Behav. Genet. 34: 121-130.
    • (2004) Behav. Genet. , vol.34 , pp. 121-130
    • Schutz, K.E.1    Kerje, S.2    Jacobsson, L.3    Forkman, B.4    Carlborg, O.5
  • 22
    • 67651219230 scopus 로고    scopus 로고
    • Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens
    • Wright, D., H. Boije, J. R. Meadows, B. Bed'hom, D. Gourichon et al., 2009 Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens. PLoS Genet. 5: e1000512.
    • (2009) PLoS Genet. , vol.5
    • Wright, D.1    Boije, H.2    Meadows, J.R.3    Bed'hom, B.4    Gourichon, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.