-
2
-
-
79951493627
-
On the future of genomic data
-
10.1126/science.1197891, 21311016
-
Kahn SD. On the future of genomic data. Science 2011, 331(6018):728-729. 10.1126/science.1197891, 21311016.
-
(2011)
Science
, vol.331
, Issue.6018
, pp. 728-729
-
-
Kahn, S.D.1
-
3
-
-
79959403670
-
Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
-
10.1101/gr.110882.110, 3129258, 21543516
-
Islam S, Kjallquist U, Moliner A, Zajac P, Fan JB, Lonnerberg P, Linnarsson S. Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome research 2011, 21(7):1160-1167. 10.1101/gr.110882.110, 3129258, 21543516.
-
(2011)
Genome research
, vol.21
, Issue.7
, pp. 1160-1167
-
-
Islam, S.1
Kjallquist, U.2
Moliner, A.3
Zajac, P.4
Fan, J.B.5
Lonnerberg, P.6
Linnarsson, S.7
-
4
-
-
21944445759
-
An ontology for cell types
-
10.1186/gb-2005-6-2-r21, 551541, 15693950
-
Bard J, Rhee SY, Ashburner M. An ontology for cell types. Genome biology 2005, 6(2):R21. 10.1186/gb-2005-6-2-r21, 551541, 15693950.
-
(2005)
Genome biology
, vol.6
, Issue.2
-
-
Bard, J.1
Rhee, S.Y.2
Ashburner, M.3
-
5
-
-
35948989284
-
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
-
10.1038/nbt1346, 2814061, 17989687
-
Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nature biotechnology 2007, 25(11):1251-1255. 10.1038/nbt1346, 2814061, 17989687.
-
(2007)
Nature biotechnology
, vol.25
, Issue.11
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
Bard, J.4
Bug, W.5
Ceusters, W.6
Goldberg, L.J.7
Eilbeck, K.8
Ireland, A.9
Mungall, C.J.10
-
6
-
-
79952022355
-
Hematopoietic cell types: prototype for a revised cell ontology
-
10.1016/j.jbi.2010.01.006, 2892030, 20123131
-
Diehl AD, Augustine AD, Blake JA, Cowell LG, Gold ES, Gondre-Lewis TA, Masci AM, Meehan TF, Morel PA, Nijnik A, et al. Hematopoietic cell types: prototype for a revised cell ontology. Journal of biomedical informatics 2011, 44(1):75-79. 10.1016/j.jbi.2010.01.006, 2892030, 20123131.
-
(2011)
Journal of biomedical informatics
, vol.44
, Issue.1
, pp. 75-79
-
-
Diehl, A.D.1
Augustine, A.D.2
Blake, J.A.3
Cowell, L.G.4
Gold, E.S.5
Gondre-Lewis, T.A.6
Masci, A.M.7
Meehan, T.F.8
Morel, P.A.9
Nijnik, A.10
-
7
-
-
78650789238
-
Logical development of the cell ontology
-
10.1186/1471-2105-12-6, 3024222, 21208450
-
Meehan TF, Masci AM, Abdulla A, Cowell LG, Blake JA, Mungall CJ, Diehl AD. Logical development of the cell ontology. BMC bioinformatics 2011, 12:6. 10.1186/1471-2105-12-6, 3024222, 21208450.
-
(2011)
BMC bioinformatics
, vol.12
, pp. 6
-
-
Meehan, T.F.1
Masci, A.M.2
Abdulla, A.3
Cowell, L.G.4
Blake, J.A.5
Mungall, C.J.6
Diehl, A.D.7
-
8
-
-
78651286167
-
The Protein Ontology: a structured representation of protein forms and complexes
-
10.1093/nar/gkq907, 3013777, 20935045
-
Natale DA, Arighi CN, Barker WC, Blake JA, Bult CJ, Caudy M, Drabkin HJ, D'Eustachio P, Evsikov AV, Huang H, et al. The Protein Ontology: a structured representation of protein forms and complexes. Nucleic acids research 2011, 39:D539-545. 10.1093/nar/gkq907, 3013777, 20935045.
-
(2011)
Nucleic acids research
, vol.39
-
-
Natale, D.A.1
Arighi, C.N.2
Barker, W.C.3
Blake, J.A.4
Bult, C.J.5
Caudy, M.6
Drabkin, H.J.7
D'Eustachio, P.8
Evsikov, A.V.9
Huang, H.10
-
9
-
-
84859699831
-
The gene ontology: enhancements for 2011
-
3245151, 22102568, Gene Ontology C
-
Gene Ontology C The gene ontology: enhancements for 2011. Nucleic acids research 2012, 40:D559-564. 3245151, 22102568, Gene Ontology C.
-
(2012)
Nucleic acids research
, vol.40
-
-
-
10
-
-
0028227203
-
Analysis of somatic mutation in five B cell subsets of human tonsil
-
10.1084/jem.180.1.329, 2191579, 8006591
-
Pascual V, Liu YJ, Magalski A, de Bouteiller O, Banchereau J, Capra JD. Analysis of somatic mutation in five B cell subsets of human tonsil. The Journal of experimental medicine 1994, 180(1):329-339. 10.1084/jem.180.1.329, 2191579, 8006591.
-
(1994)
The Journal of experimental medicine
, vol.180
, Issue.1
, pp. 329-339
-
-
Pascual, V.1
Liu, Y.J.2
Magalski, A.3
de Bouteiller, O.4
Banchereau, J.5
Capra, J.D.6
-
11
-
-
33846702734
-
Interpretation of ANOVA models for microarray data using PCA
-
10.1093/bioinformatics/btl572, 17105717
-
de Haan JR, Wehrens R, Bauerschmidt S, Piek E, van Schaik RC, Buydens LM. Interpretation of ANOVA models for microarray data using PCA. Bioinformatics 2007, 23(2):184-190. 10.1093/bioinformatics/btl572, 17105717.
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 184-190
-
-
de Haan, J.R.1
Wehrens, R.2
Bauerschmidt, S.3
Piek, E.4
van Schaik, R.C.5
Buydens, L.M.6
-
12
-
-
0036203115
-
A mixture model-based approach to the clustering of microarray expression data
-
10.1093/bioinformatics/18.3.413, 11934740
-
McLachlan GJ, Bean RW, Peel D. A mixture model-based approach to the clustering of microarray expression data. Bioinformatics 2002, 18(3):413-422. 10.1093/bioinformatics/18.3.413, 11934740.
-
(2002)
Bioinformatics
, vol.18
, Issue.3
, pp. 413-422
-
-
McLachlan, G.J.1
Bean, R.W.2
Peel, D.3
-
13
-
-
33745951206
-
ROKU: a novel method for identification of tissue-specific genes
-
10.1186/1471-2105-7-294, 1501047, 16764735
-
Kadota K, Ye J, Nakai Y, Terada T, Shimizu K. ROKU: a novel method for identification of tissue-specific genes. BMC bioinformatics 2006, 7:294. 10.1186/1471-2105-7-294, 1501047, 16764735.
-
(2006)
BMC bioinformatics
, vol.7
, pp. 294
-
-
Kadota, K.1
Ye, J.2
Nakai, Y.3
Terada, T.4
Shimizu, K.5
-
14
-
-
84855187955
-
SpeCond: a method to detect condition-specific gene expression
-
10.1186/gb-2011-12-10-r101, 3333772, 22008066
-
Cavalli FM, Bourgon R, Vaquerizas JM, Luscombe NM. SpeCond: a method to detect condition-specific gene expression. Genome biology 2011, 12(10):R101. 10.1186/gb-2011-12-10-r101, 3333772, 22008066.
-
(2011)
Genome biology
, vol.12
, Issue.10
-
-
Cavalli, F.M.1
Bourgon, R.2
Vaquerizas, J.M.3
Luscombe, N.M.4
-
15
-
-
52649097448
-
Immunological genome project C: the immunological genome project: networks of gene expression in immune cells
-
10.1038/ni1008-1091, 18800157
-
Heng TS, Painter MW. Immunological genome project C: the immunological genome project: networks of gene expression in immune cells. Nature immunology 2008, 9(10):1091-1094. 10.1038/ni1008-1091, 18800157.
-
(2008)
Nature immunology
, vol.9
, Issue.10
, pp. 1091-1094
-
-
Heng, T.S.1
Painter, M.W.2
-
16
-
-
84885469342
-
-
CL Immgen Data Archive http://purl.obolibrary.org/obo/cl/analysis/cl-immgen/.
-
CL Immgen Data Archive
-
-
-
17
-
-
79952775180
-
Immunological genome project c: transcriptomes of the b and t lineages compared by multiplatform microarray profiling
-
Painter MW, Davis S, Hardy RR, Mathis D, Benoist C. Immunological genome project c: transcriptomes of the b and t lineages compared by multiplatform microarray profiling. Journal of immunology 2011, 186(5):3047-3057.
-
(2011)
Journal of immunology
, vol.186
, Issue.5
, pp. 3047-3057
-
-
Painter, M.W.1
Davis, S.2
Hardy, R.R.3
Mathis, D.4
Benoist, C.5
-
18
-
-
78649678445
-
Loss of stearoyl-CoA desaturase activity leads to free cholesterol synthesis through increased Xbp-1 splicing
-
10.1152/ajpendo.00388.2010, 3006250, 20923962
-
Paton CM, Ntambi JM. Loss of stearoyl-CoA desaturase activity leads to free cholesterol synthesis through increased Xbp-1 splicing. American journal of physiology Endocrinology and metabolism 2010, 299(6):E1066-1075. 10.1152/ajpendo.00388.2010, 3006250, 20923962.
-
(2010)
American journal of physiology Endocrinology and metabolism
, vol.299
, Issue.6
-
-
Paton, C.M.1
Ntambi, J.M.2
-
19
-
-
78651319979
-
Ongoing and future developments at the universal protein resource
-
3013648, 21051339
-
UniProt C. Ongoing and future developments at the universal protein resource. Nucleic acids research 2011, 39:D214-219. 3013648, 21051339.
-
(2011)
Nucleic acids research
, vol.39
-
-
UniProt, C.1
-
20
-
-
84885485462
-
-
VLAD http://proto.informatics.jax.org/prototypes/vlad-1.0.3/.
-
VLAD
-
-
-
21
-
-
42349090206
-
The role of B lymphocytes as antigen-presenting cells
-
10.1007/s00005-008-0014-5, 18373241
-
Chen X, Jensen PE. The role of B lymphocytes as antigen-presenting cells. Archivum immunologiae et therapiae experimentalis 2008, 56(2):77-83. 10.1007/s00005-008-0014-5, 18373241.
-
(2008)
Archivum immunologiae et therapiae experimentalis
, vol.56
, Issue.2
, pp. 77-83
-
-
Chen, X.1
Jensen, P.E.2
-
22
-
-
0021957420
-
Isolation and functional analysis of human B cell populations. I. Characterization of the B1 + B2+ and B1 + B2- subsets
-
Anderson KC, Boyd AW, Fisher DC, Slaughenhoupt B, Groopman JE, O'Hara CJ, Daley JF, Schlossman SF, Nadler LM. Isolation and functional analysis of human B cell populations. I. Characterization of the B1 + B2+ and B1 + B2- subsets. Journal of immunology 1985, 134(2):820-827.
-
(1985)
Journal of immunology
, vol.134
, Issue.2
, pp. 820-827
-
-
Anderson, K.C.1
Boyd, A.W.2
Fisher, D.C.3
Slaughenhoupt, B.4
Groopman, J.E.5
O'Hara, C.J.6
Daley, J.F.7
Schlossman, S.F.8
Nadler, L.M.9
-
23
-
-
80555129348
-
Cannabinoid receptor 2 positions and retains marginal zone B cells within the splenic marginal zone
-
10.1084/jem.20111083, 3182059, 21875957
-
Muppidi JR, Arnon TI, Bronevetsky Y, Veerapen N, Tanaka M, Besra GS, Cyster JG. Cannabinoid receptor 2 positions and retains marginal zone B cells within the splenic marginal zone. The Journal of experimental medicine 2011, 208(10):1941-1948. 10.1084/jem.20111083, 3182059, 21875957.
-
(2011)
The Journal of experimental medicine
, vol.208
, Issue.10
, pp. 1941-1948
-
-
Muppidi, J.R.1
Arnon, T.I.2
Bronevetsky, Y.3
Veerapen, N.4
Tanaka, M.5
Besra, G.S.6
Cyster, J.G.7
-
24
-
-
81455141948
-
Programmed cell death 1 suppresses B-1b cell expansion and long-lived IgG production in response to T cell-independent type 2 antigens
-
Haas KM. Programmed cell death 1 suppresses B-1b cell expansion and long-lived IgG production in response to T cell-independent type 2 antigens. Journal of immunology 2011, 187(10):5183-5195.
-
(2011)
Journal of immunology
, vol.187
, Issue.10
, pp. 5183-5195
-
-
Haas, K.M.1
-
25
-
-
33846635838
-
Imaging of germinal center selection events during affinity maturation
-
10.1126/science.1136736, 17185562
-
Allen CD, Okada T, Tang HL, Cyster JG. Imaging of germinal center selection events during affinity maturation. Science 2007, 315(5811):528-531. 10.1126/science.1136736, 17185562.
-
(2007)
Science
, vol.315
, Issue.5811
, pp. 528-531
-
-
Allen, C.D.1
Okada, T.2
Tang, H.L.3
Cyster, J.G.4
-
26
-
-
33847206141
-
In vivo imaging of germinal centres reveals a dynamic open structure
-
10.1038/nature05573, 17268470
-
Schwickert TA, Lindquist RL, Shakhar G, Livshits G, Skokos D, Kosco-Vilbois MH, Dustin ML, Nussenzweig MC. In vivo imaging of germinal centres reveals a dynamic open structure. Nature 2007, 446(7131):83-87. 10.1038/nature05573, 17268470.
-
(2007)
Nature
, vol.446
, Issue.7131
, pp. 83-87
-
-
Schwickert, T.A.1
Lindquist, R.L.2
Shakhar, G.3
Livshits, G.4
Skokos, D.5
Kosco-Vilbois, M.H.6
Dustin, M.L.7
Nussenzweig, M.C.8
-
27
-
-
37849022709
-
Axon growth and guidance genes identify T-dependent germinal centre B cells
-
10.1038/sj.icb.7100123, 17938642
-
Yu D, Cook MC, Shin DM, Silva DG, Marshall J, Toellner KM, Havran WL, Caroni P, Cooke MP, Morse HC, et al. Axon growth and guidance genes identify T-dependent germinal centre B cells. Immunology and cell biology 2008, 86(1):3-14. 10.1038/sj.icb.7100123, 17938642.
-
(2008)
Immunology and cell biology
, vol.86
, Issue.1
, pp. 3-14
-
-
Yu, D.1
Cook, M.C.2
Shin, D.M.3
Silva, D.G.4
Marshall, J.5
Toellner, K.M.6
Havran, W.L.7
Caroni, P.8
Cooke, M.P.9
Morse, H.C.10
-
28
-
-
84855321819
-
DNA repair: the link between primary immunodeficiency and cancer
-
10.1111/j.1749-6632.2011.06322.x, 22236430
-
de Miranda NF, Bjorkman A, Pan-Hammarstrom Q. DNA repair: the link between primary immunodeficiency and cancer. Ann N Y Acad Sci 2011, 1246:50-63. 10.1111/j.1749-6632.2011.06322.x, 22236430.
-
(2011)
Ann N Y Acad Sci
, vol.1246
, pp. 50-63
-
-
de Miranda, N.F.1
Bjorkman, A.2
Pan-Hammarstrom, Q.3
-
29
-
-
80053133221
-
NK cell development, homeostasis and function: parallels with CD8(+) T cells
-
10.1038/nri3044, 21869816
-
Sun JC, Lanier LL. NK cell development, homeostasis and function: parallels with CD8(+) T cells. Nature reviews Immunology 2011, 11(10):645-657. 10.1038/nri3044, 21869816.
-
(2011)
Nature reviews Immunology
, vol.11
, Issue.10
, pp. 645-657
-
-
Sun, J.C.1
Lanier, L.L.2
-
30
-
-
0032520775
-
The A-Myb transcription factor is a marker of centroblasts in vivo
-
Golay J, Broccoli V, Lamorte G, Bifulco C, Parravicini C, Pizzey A, Thomas NS, Delia D, Ferrauti P, Vitolo D, et al. The A-Myb transcription factor is a marker of centroblasts in vivo. Journal of immunology 1998, 160(6):2786-2793.
-
(1998)
Journal of immunology
, vol.160
, Issue.6
, pp. 2786-2793
-
-
Golay, J.1
Broccoli, V.2
Lamorte, G.3
Bifulco, C.4
Parravicini, C.5
Pizzey, A.6
Thomas, N.S.7
Delia, D.8
Ferrauti, P.9
Vitolo, D.10
-
31
-
-
63149179802
-
Balancing AID and DNA repair during somatic hypermutation
-
10.1016/j.it.2009.01.007, 19303358
-
Liu M, Schatz DG. Balancing AID and DNA repair during somatic hypermutation. Trends in immunology 2009, 30(4):173-181. 10.1016/j.it.2009.01.007, 19303358.
-
(2009)
Trends in immunology
, vol.30
, Issue.4
, pp. 173-181
-
-
Liu, M.1
Schatz, D.G.2
-
32
-
-
84866537220
-
Molecular definition of the identity and activation of natural killer cells
-
10.1038/ni.2395, 3572860, 22902830, Immunological genome project C
-
Bezman NA, Kim CC, Sun JC, Min-Oo G, Hendricks DW, Kamimura Y, Best JA, Goldrath AW, Lanier LL, Immunological genome project C Molecular definition of the identity and activation of natural killer cells. Nature immunology 2012, 13(10):1000-1009. 10.1038/ni.2395, 3572860, 22902830, Immunological genome project C.
-
(2012)
Nature immunology
, vol.13
, Issue.10
, pp. 1000-1009
-
-
Bezman, N.A.1
Kim, C.C.2
Sun, J.C.3
Min-Oo, G.4
Hendricks, D.W.5
Kamimura, Y.6
Best, J.A.7
Goldrath, A.W.8
Lanier, L.L.9
-
33
-
-
71049125785
-
Speckled-like pattern in the germinal center (SLIP-GC), a nuclear GTPase expressed in activation-induced deaminase-expressing lymphomas and germinal center B cells
-
10.1074/jbc.M109.014506, 2781619, 19734146
-
Richter K, Brar S, Ray M, Pisitkun P, Bolland S, Verkoczy L, Diaz M. Speckled-like pattern in the germinal center (SLIP-GC), a nuclear GTPase expressed in activation-induced deaminase-expressing lymphomas and germinal center B cells. The Journal of biological chemistry 2009, 284(44):30652-30661. 10.1074/jbc.M109.014506, 2781619, 19734146.
-
(2009)
The Journal of biological chemistry
, vol.284
, Issue.44
, pp. 30652-30661
-
-
Richter, K.1
Brar, S.2
Ray, M.3
Pisitkun, P.4
Bolland, S.5
Verkoczy, L.6
Diaz, M.7
-
34
-
-
0036721767
-
RGS13 regulates germinal center B lymphocytes responsiveness to CXC chemokine ligand (CXCL)12 and CXCL13
-
Shi GX, Harrison K, Wilson GL, Moratz C, Kehrl JH. RGS13 regulates germinal center B lymphocytes responsiveness to CXC chemokine ligand (CXCL)12 and CXCL13. Journal of immunology 2002, 169(5):2507-2515.
-
(2002)
Journal of immunology
, vol.169
, Issue.5
, pp. 2507-2515
-
-
Shi, G.X.1
Harrison, K.2
Wilson, G.L.3
Moratz, C.4
Kehrl, J.H.5
-
35
-
-
28244476478
-
RasGRP1 and RasGRP3 regulate B cell proliferation by facilitating B cell receptor-Ras signaling
-
Coughlin JJ, Stang SL, Dower NA, Stone JC. RasGRP1 and RasGRP3 regulate B cell proliferation by facilitating B cell receptor-Ras signaling. Journal of immunology 2005, 175(11):7179-7184.
-
(2005)
Journal of immunology
, vol.175
, Issue.11
, pp. 7179-7184
-
-
Coughlin, J.J.1
Stang, S.L.2
Dower, N.A.3
Stone, J.C.4
-
36
-
-
34548674452
-
RASSF6 is a novel member of the RASSF family of tumor suppressors
-
10.1038/sj.onc.1210440, 17404571
-
Allen NP, Donninger H, Vos MD, Eckfeld K, Hesson L, Gordon L, Birrer MJ, Latif F, Clark GJ. RASSF6 is a novel member of the RASSF family of tumor suppressors. Oncogene 2007, 26(42):6203-6211. 10.1038/sj.onc.1210440, 17404571.
-
(2007)
Oncogene
, vol.26
, Issue.42
, pp. 6203-6211
-
-
Allen, N.P.1
Donninger, H.2
Vos, M.D.3
Eckfeld, K.4
Hesson, L.5
Gordon, L.6
Birrer, M.J.7
Latif, F.8
Clark, G.J.9
-
37
-
-
67651093725
-
The novel RASSF6 and RASSF10 candidate tumour suppressor genes are frequently epigenetically inactivated in childhood leukaemias
-
10.1186/1476-4598-8-42, 2711046, 19570220
-
Hesson LB, Dunwell TL, Cooper WN, Catchpoole D, Brini AT, Chiaramonte R, Griffiths M, Chalmers AD, Maher ER, Latif F. The novel RASSF6 and RASSF10 candidate tumour suppressor genes are frequently epigenetically inactivated in childhood leukaemias. Molecular cancer 2009, 8:42. 10.1186/1476-4598-8-42, 2711046, 19570220.
-
(2009)
Molecular cancer
, vol.8
, pp. 42
-
-
Hesson, L.B.1
Dunwell, T.L.2
Cooper, W.N.3
Catchpoole, D.4
Brini, A.T.5
Chiaramonte, R.6
Griffiths, M.7
Chalmers, A.D.8
Maher, E.R.9
Latif, F.10
-
38
-
-
73349136609
-
Hippo pathway-dependent and -independent roles of RASSF6
-
10.1126/scisignal.2000300, 19797269
-
Ikeda M, Kawata A, Nishikawa M, Tateishi Y, Yamaguchi M, Nakagawa K, Hirabayashi S, Bao Y, Hidaka S, Hirata Y, et al. Hippo pathway-dependent and -independent roles of RASSF6. Science signaling 2009, 2(90):ra59. 10.1126/scisignal.2000300, 19797269.
-
(2009)
Science signaling
, vol.2
, Issue.90
-
-
Ikeda, M.1
Kawata, A.2
Nishikawa, M.3
Tateishi, Y.4
Yamaguchi, M.5
Nakagawa, K.6
Hirabayashi, S.7
Bao, Y.8
Hidaka, S.9
Hirata, Y.10
-
39
-
-
78650071942
-
HGAL, a germinal center specific protein, decreases lymphoma cell motility by modulation of the RhoA signaling pathway
-
10.1182/blood-2010-04-281568, 3012539, 20844236
-
Jiang X, Lu X, McNamara G, Liu X, Cubedo E, Sarosiek KA, Sanchez-Garcia I, Helfman DM, Lossos IS. HGAL, a germinal center specific protein, decreases lymphoma cell motility by modulation of the RhoA signaling pathway. Blood 2010, 116(24):5217-5227. 10.1182/blood-2010-04-281568, 3012539, 20844236.
-
(2010)
Blood
, vol.116
, Issue.24
, pp. 5217-5227
-
-
Jiang, X.1
Lu, X.2
McNamara, G.3
Liu, X.4
Cubedo, E.5
Sarosiek, K.A.6
Sanchez-Garcia, I.7
Helfman, D.M.8
Lossos, I.S.9
-
40
-
-
33745090870
-
M17, a gene specific for germinal center (GC) B cells and a prognostic marker for GC B-cell lymphomas, is dispensable for the GC reaction in mice
-
10.1182/blood-2005-10-4154, 1895815, 16493007
-
Schenten D, Egert A, Pasparakis M, Rajewsky K. M17, a gene specific for germinal center (GC) B cells and a prognostic marker for GC B-cell lymphomas, is dispensable for the GC reaction in mice. Blood 2006, 107(12):4849-4856. 10.1182/blood-2005-10-4154, 1895815, 16493007.
-
(2006)
Blood
, vol.107
, Issue.12
, pp. 4849-4856
-
-
Schenten, D.1
Egert, A.2
Pasparakis, M.3
Rajewsky, K.4
-
41
-
-
78651284406
-
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments
-
10.1093/nar/gkq1040, 3013660, 21071405
-
Parkinson H, Sarkans U, Kolesnikov N, Abeygunawardena N, Burdett T, Dylag M, Emam I, Farne A, Hastings E, Holloway E, et al. ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic acids research 2011, 39:D1002-1004. 10.1093/nar/gkq1040, 3013660, 21071405.
-
(2011)
Nucleic acids research
, vol.39
-
-
Parkinson, H.1
Sarkans, U.2
Kolesnikov, N.3
Abeygunawardena, N.4
Burdett, T.5
Dylag, M.6
Emam, I.7
Farne, A.8
Hastings, E.9
Holloway, E.10
-
42
-
-
77951973818
-
Modeling sample variables with an experimental factor ontology
-
10.1093/bioinformatics/btq099, 2853691, 20200009
-
Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H. Modeling sample variables with an experimental factor ontology. Bioinformatics 2010, 26(8):1112-1118. 10.1093/bioinformatics/btq099, 2853691, 20200009.
-
(2010)
Bioinformatics
, vol.26
, Issue.8
, pp. 1112-1118
-
-
Malone, J.1
Holloway, E.2
Adamusiak, T.3
Kapushesky, M.4
Zheng, J.5
Kolesnikov, N.6
Zhukova, A.7
Brazma, A.8
Parkinson, H.9
-
43
-
-
84856316836
-
Uberon, an integrative multi-species anatomy ontology
-
10.1186/gb-2012-13-1-r5, 3334586, 22293552
-
Mungall CJ, Torniai C, Gkoutos GV, Lewis SE, Haendel MA. Uberon, an integrative multi-species anatomy ontology. Genome biology 2012, 13(1):R5. 10.1186/gb-2012-13-1-r5, 3334586, 22293552.
-
(2012)
Genome biology
, vol.13
, Issue.1
-
-
Mungall, C.J.1
Torniai, C.2
Gkoutos, G.V.3
Lewis, S.E.4
Haendel, M.A.5
-
44
-
-
84874608326
-
Digital sorting of complex tissues for cell type-specific gene expression profiles
-
10.1186/1471-2105-14-89, 3626856, 23497278
-
Zhong Y, Wan YW, Pang K, Chow LM, Liu Z. Digital sorting of complex tissues for cell type-specific gene expression profiles. BMC bioinformatics 2013, 14:89. 10.1186/1471-2105-14-89, 3626856, 23497278.
-
(2013)
BMC bioinformatics
, vol.14
, pp. 89
-
-
Zhong, Y.1
Wan, Y.W.2
Pang, K.3
Chow, L.M.4
Liu, Z.5
-
45
-
-
32044442759
-
Promoter features related to tissue specificity as measured by Shannon entropy
-
10.1186/gb-2005-6-4-r33, 1088961, 15833120
-
Schug J, Schuller WP, Kappen C, Salbaum JM, Bucan M, Stoeckert CJ. Promoter features related to tissue specificity as measured by Shannon entropy. Genome biology 2005, 6(4):R33. 10.1186/gb-2005-6-4-r33, 1088961, 15833120.
-
(2005)
Genome biology
, vol.6
, Issue.4
-
-
Schug, J.1
Schuller, W.P.2
Kappen, C.3
Salbaum, J.M.4
Bucan, M.5
Stoeckert, C.J.6
-
47
-
-
84857980747
-
BLUEPRINT to decode the epigenetic signature written in blood
-
10.1038/nbt.2153, 22398613
-
Adams D, Altucci L, Antonarakis SE, Ballesteros J, Beck S, Bird A, Bock C, Boehm B, Campo E, Caricasole A, et al. BLUEPRINT to decode the epigenetic signature written in blood. Nature biotechnology 2012, 30(3):224-226. 10.1038/nbt.2153, 22398613.
-
(2012)
Nature biotechnology
, vol.30
, Issue.3
, pp. 224-226
-
-
Adams, D.1
Altucci, L.2
Antonarakis, S.E.3
Ballesteros, J.4
Beck, S.5
Bird, A.6
Bock, C.7
Boehm, B.8
Campo, E.9
Caricasole, A.10
-
48
-
-
79955750055
-
Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
-
10.1126/science.1198704, 3273988, 21551058
-
Bendall SC, Simonds EF, Qiu P, el Amir AD, Krutzik PO, Finck R, Bruggner RV, Melamed R, Trejo A, Ornatsky OI, et al. Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science 2011, 332(6030):687-696. 10.1126/science.1198704, 3273988, 21551058.
-
(2011)
Science
, vol.332
, Issue.6030
, pp. 687-696
-
-
Bendall, S.C.1
Simonds, E.F.2
Qiu, P.3
el Amir, A.D.4
Krutzik, P.O.5
Finck, R.6
Bruggner, R.V.7
Melamed, R.8
Trejo, A.9
Ornatsky, O.I.10
-
49
-
-
84874271270
-
NCBI GEO: archive for functional genomics data sets--update
-
10.1093/nar/gks1193, 3531084, 23193258
-
Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Holko M, et al. NCBI GEO: archive for functional genomics data sets--update. Nucleic acids research 2013, 41:D991-995. 10.1093/nar/gks1193, 3531084, 23193258.
-
(2013)
Nucleic acids research
, vol.41
-
-
Barrett, T.1
Wilhite, S.E.2
Ledoux, P.3
Evangelista, C.4
Kim, I.F.5
Tomashevsky, M.6
Marshall, K.A.7
Phillippy, K.H.8
Sherman, P.M.9
Holko, M.10
-
50
-
-
1342288026
-
Affy-analysis of Affymetrix GeneChip data at the probe level
-
10.1093/bioinformatics/btg405, 14960456
-
Gautier L, Cope L, Bolstad BM, Irizarry RA. affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 2004, 20(3):307-315. 10.1093/bioinformatics/btg405, 14960456.
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 307-315
-
-
Gautier, L.1
Cope, L.2
Bolstad, B.M.3
Irizarry, R.A.4
-
51
-
-
67949098968
-
Puma: a Bioconductor package for propagating uncertainty in microarray analysis
-
10.1186/1471-2105-10-211, 2714555, 19589155
-
Pearson RD, Liu X, Sanguinetti G, Milo M, Lawrence ND, Rattray M. puma: a Bioconductor package for propagating uncertainty in microarray analysis. BMC bioinformatics 2009, 10:211. 10.1186/1471-2105-10-211, 2714555, 19589155.
-
(2009)
BMC bioinformatics
, vol.10
, pp. 211
-
-
Pearson, R.D.1
Liu, X.2
Sanguinetti, G.3
Milo, M.4
Lawrence, N.D.5
Rattray, M.6
-
52
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Statistical applications in genetics and molecular biology 2004, 3:3.
-
(2004)
Statistical applications in genetics and molecular biology
, vol.3
, pp. 3
-
-
Smyth, G.K.1
-
54
-
-
34548595489
-
OBO-Edit--an ontology editor for biologists
-
10.1093/bioinformatics/btm112, 17545183, Gene Ontology OBOEWG
-
Day-Richter J, Harris MA, Haendel M, Lewis S, Gene Ontology OBOEWG OBO-Edit--an ontology editor for biologists. Bioinformatics 2007, 23(16):2198-2200. 10.1093/bioinformatics/btm112, 17545183, Gene Ontology OBOEWG.
-
(2007)
Bioinformatics
, vol.23
, Issue.16
, pp. 2198-2200
-
-
Day-Richter, J.1
Harris, M.A.2
Haendel, M.3
Lewis, S.4
-
55
-
-
84885469444
-
-
Cell Ontology http://www.cellontology.org.
-
Cell Ontology
-
-
-
56
-
-
80052090090
-
MIREOT: The minimum information to reference an external ontology term
-
Courtot M, Gibson F, Lister AL, Malone J, Schober D, Brinkman RR, Ruttenberg A. MIREOT: The minimum information to reference an external ontology term. Appl Ontol 2011, 6(1):23-33.
-
(2011)
Appl Ontol
, vol.6
, Issue.1
, pp. 23-33
-
-
Courtot, M.1
Gibson, F.2
Lister, A.L.3
Malone, J.4
Schober, D.5
Brinkman, R.R.6
Ruttenberg, A.7
-
57
-
-
84885481437
-
-
CL-pairwise.obo http://purl.obolibrary.org/obo/cl/analysis/cl-immgen/index.html.
-
CL-pairwise.obo
-
-
|