Kinetically-aware conformational distances in molecular dynamics

Proceedings of the 23rd Annual Canadian Conference on Computational Geometry, CCCG 2011

Volumn , Issue , 2011, Pages

  Gu, Chen ^a   Jiang, Xiaoye ^a   Guibas, Leonidas ^a  

^a Stanford University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMOLECULAR CONFORMATIONS; K-CENTER; KINETIC INFORMATION; META-STABLE STATE;

ALGORITHMS; BIOMOLECULES; COMPUTATIONAL GEOMETRY; CONFORMATIONS; MOLECULAR DYNAMICS;

KINETICS;

EID: 84882992943     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (9)

1. P. Brion and E. Westhof. Hierarchy and dynamics of RNA folding. Annual review of biophysics and biomolecular structure, 26, 1997.
2. J. Chodera, N. Singhal, V. Pande, K. Dill, and W. Swope. Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics. Journal of Chemical Physics, 126(15), 2007.
3. S. Dasgupta. Lecture notes on unsupervised learning. http://cseweb.ucsd. edu/-dasgupta/291/, 2008.
4. C. Dobson. Protein folding and misfolding. Nature, 426(6968), 2003.
5. X. Huang, Y. Yao, G. Bowman, J. Sun, L. Guibas, G. Carlsson, and V. Pande. Constructing multiresolution Markov state models to elucidate RNA hairpin folding mechanisms. Pacific Symposium on Biocomputing, 2010.
6. L. Kavraki. Molecular distance measures. Connexions, http://cnx.org/ content/m11608/1.23/, 2007.
7. R. Marshall, C. Aitken, M. Dorywalska, and J. Puglisi. Translation at the single-molecule level. Annual Review of Biochemistry, 77, 2008.
8. S. Plotkin. Lecture notes on advanced algorithms. http://cs361b.stanford. edu/, 2010.
9. B. Steipe. A revised proof of the metric properties of optimally superimposed vector sets. Acta Crystallographica Section A, 58(5), 2002.