Structural and functional diversity of bacterial community in soil treated with the herbicide napropamide estimated by the DGGE, CLPP and r/K-strategy approaches

Applied Soil Ecology

Volumn 72, Issue , 2013, Pages 242-250

  Cycoń, Mariusz ^a   Markowicz, Anna ^b   Piotrowska Seget, Zofia ^b  

^a MEDICAL UNIVERSITY OF SILESIA   (Poland)

^b UNIVERSITY OF SILESIA   (Poland)

Author keywords

Biodiversity; CLPP; DGGE; Microbial community structure; Napropamide; R K strategists

Indexed keywords

EID: 84882968565     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2013.07.015     Document Type: Article

References (36)

1. Bloem J., Breure A.M. Microbial indicators. Bioindicators and Biomonitors 2003, 259-282. Elsevier, Oxford. B.A. Markert, A.M. Breure, H.G. Zechmeister (Eds.).
2. Biswas P.K., Pramanik S.K., Mitra S.R., Bhattacharyya A. Persistence of napropamide in/on tea under North-East Indian climatic condition. Bull. Environ. Contam. Toxicol. 2007, 79:566-569.
3. Cui L.E., Yang H. Accumulation and residue of napropamide in alfalfa (Medicago sativa) and soil involved in toxic response. J. Hazard. Mater. 2011, 190:81-86.
4. Cycoń M., Piotrowska-Seget Z. Changes in bacterial diversity and community structure following pesticides addition to soil estimated by cultivation technique. Ecotoxicology 2009, 18:632-642.
5. Cycoń M., Piotrowska-Seget Z., Kozdrój J. Linuron effects on microbiological characteristics of sandy soils as determined in a pot study. Ann. Microbiol. 2010, 60:439-449.
6. Cycoń M., Piotrowska-Seget Z., Kozdrój J. Responses of indigenous microorganisms to a fungicidal mixture of mancozeb and dimethomorph added to sandy soils. Int. Biodeterior. Biodegradation 2010, 64:316-323.
7. Cycoń M., Wójcik M., Borymski S., Piotrowska-Seget Z. A broad-spectrum analysis of the effects of teflubenzuron exposure on the biochemical activities and microbial community structure of soil. J. Environ. Manage. 2012, 108:27-35.
8. Cycoń M., Wójcik M., Borymski S., Piotrowska-Seget Z. Short-term effects of the herbicide napropamide on the activity and structure of the soil microbial community assessed by the multi-approach analysis. Appl. Soil Ecol. 2013, 66:8-18.
9. De Leij F.A.A.M., Whipps J.M., Lynch J.M. The use of colony development for the characterization of bacterial communities in soil and roots. Microb. Ecol. 1993, 27:81-97.
10. DiTomaso J.M., Rost T.L., Ashton F.M. The comparative cell cycle and metabolic effects of the herbicide napropamide on root tip meristems. Pestic. Biochem. Physiol. 1998, 31:166-174.
11. Ellis R.J., Morgan P., Weightman A.J., Fry J.C. Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil. Appl. Environ. Microbiol. 2003, 69:3223-3230.
12. Ferreira E.P.B., Dusi A.N., Costa J.R.C., Xavier G.R., Rumjanek N.R. Assessing insecticide and fungicide effects on the culturable soil bacterial community by analyses of variance of their DGGE fingerprinting data. Eur. J. Soil Biol. 2009, 45:466-472.
13. Floch C., Chevremont A.C., Joanico K., Capowiez Y., Criquet S. Indicators of pesticide contamination Soil enzyme compared to functional diversity of bacterial communities via Biolog® Ecoplates. Eur. J. Soil Biol. 2011, 47:256-263.
14. Garland J. Analysis and interpretation of community-level physiological profiles in microbial ecology. FEMS Microbiol. Ecol. 1997, 24:289-300.
15. Guo H., Chen G., Lv Z., Zhao H., Yang H. Alteration of microbial properties and community structure in soils exposed to napropamide. J. Environ. Sci. 2009, 21:494-502.
16. Hattori T. Kinetics of colony formation of bacteria. An approach to the basis of the plate count method. Rep. Inst. Agric. Res. Tohuku Univ. 1985, 34:1-36.
17. Insam H. A new set of substrates proposed for community characterization in environmental samples. Microbial Communities: Functional Versus Structural Approaches 1997, 259-260. Springer-Verlag, Berlin, Germany. H. Insam, A. Rangger (Eds.).
18. Janniche G.S., Spliid H., Albrechtsen H.J. Microbial community-level physiological profiles (CLPP) and herbicide mineralization potential in groundwater affected by agricultural land use. J. Contam. Hydrol. 2012, 140-141:45-55.
19. Lagomarsino A., Moscatelli M.C., Di Tizio A., Mancinelli R., Grego S., Marinari S. Soil biochemical indicators as a tool to assess the short-term impact of agricultural management on changes in organic C in a Mediterranean environment. Ecol. Indic. 2009, 9:518-527.
20. Langer U., Böhme L., Böhme P. Classification of soil microorganisms based on growth properties: a critical view of some commonly used terms. J. Plant Nutr. Soil Sci. 2004, 167:267-269.
21. Littlefield-Wyer J.G., Brooks P., Katouli M. Application of biochemical fingerprinting and fatty acid methyl ester profiling to assess the effect of the pesticide Atradex on aquatic microbial communities. Environ. Pollut. 2008, 153:393-400.
22. Lupwayi N.Z., Harker K.N., Clayton G.W., Turkington T.K., Rice W.A., O'Donovan J.T. Soil microbial biomass and diversity after herbicide application. Can. J. Plant Sci. 2004, 84:677-685.
23. Lupwayi N.Z., Brandt S.A., Harker K.N., O'Donovan J.T., Clayton G.W., Kelly Turkington T.T.K. Contrasting soil microbial responses to fertilizers and herbicides in a canola barley rotation. Soil Biol. Biochem. 2010, 42:1997-2004.
24. Martinez-Toledo M.Y., Salmerón Y., Rodelas B., Pozo C., Gonzalez-López J. Effects of the fungicide Captan on some functional groups of soil microflora. Appl. Soil Ecol. 1998, 7:245-255.
25. Mijangos I., Becerril J.M., Albizu I., Epelde L., Garibsu C. Effects of glyphosate on rhizosphere soil microbial communities under two different plant compositions by cultivation-dependent and -independent methodologies. Soil Biol. Biochem. 2009, 41:505-513.
26. Mrozik A., Cycoń M., Piotrowska-Seget Z. Changes in FAMEs profiles of Pseudomonas sp. CF600 as a marker of phenol degradation in different soils. Int. Biodeterior. Biodegradation 2010, 64:86-96.
27. Muyzer G., Wall E.C.D., Witterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
28. Nannipieri P., Ascher J., Ceccherini M.T., Landi L., Pietramellara G., Renella G. Microbial diversity and soil functions. Eur. J. Soil Sci. 2003, 54:655-670.
29. Ros M., Goberna M., Moreno J.L., Hernandez T., García C., Insam H., Pascual J.A. Molecular and physiological bacteria diversity of a semi-arid soil contaminated with different levels of formulated atrazine. Appl. Soil Ecol. 2006, 34:93-102.
30. Sarathchandra S.U., Burch G., Cox N.R. Growth patterns of bacterial communities in the rhizoplane and rhizosphere of white clover (Trifolium repens L.) and perennial ryegrass (Lolium perenne L.) in long-term pasture. Appl. Soil Ecol. 1997, 6:293-299.
31. Schloter M., Dilly O., Munch J.C. Indicators for evaluating soil quality. Agric. Ecosyst. Environ. 2003, 98:255-262.
32. Seghers D., Verthé K., Reheul D., Bulcke R., Siciliano S.D., Verstraete W., Top E.M. Effect of long-term herbicide applications on the bacterial community structure and function in an agricultural soil. FEMS Microbiol. Ecol. 2003, 46:139-146.
33. Taiwo L.B., Oso B.A. The influence of some pesticides on soil microbial flora in relation to changes in nutrient level rock phosphate solubilization and P release under laboratory conditions. Agric. Ecosyst. Environ. 1997, 65:59-68.
34. Wang M.-C., Liu Y.-H., Wang Q., Gong M., Hua X.-M., Pang Y.-J., Hu S., Yang Y.-H. Impacts of methamidophos on the biochemical catabolic, and genetic characteristics of soil microbial communities. Soil Biol. Biochem. 2008, 40:778-788.
35. Zabaloy M.C., Garland J.L., Gómez M.A. An integrated approach to evaluate the impacts of the herbicides glyphosate, 2,4-D and metsulfuron-methyl on soil microbial communities in the Pampas region, Argentina. Appl. Soil Ecol. 2008, 40:1-12.
36. Zabaloy M.C., Gómez M.A., Garland J.L., Gómez M.A. Assessment of microbial community function and structure in soil microcosms exposed to glyphosate. Appl. Soil Ecol. 2012, 61:333-339.