High incidence but low burden of coronaviruses and preferential associations between respiratory viruses

Journal of Clinical Microbiology

Volumn 51, Issue 9, 2013, Pages 3039-3046

  Lepiller, Q ^a,b,c   Barth, H ^a,b,c   Lefebvre, F ^a,b   Herbrecht, R ^a,b   Lutz, P ^a,b   Kessler, R ^a,b   Fafi Kremer, S ^a,b,c   Stoll Keller, F ^a,b,c  

^a UNIVERSITÉ DE STRASBOURG   (France)

^b UNIVERSITY HOSPITAL OF STRASBOURG   (France)

^c INSERM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGE DISTRIBUTION; AGED; ARTICLE; CHILD; CORONAVIRUS; CORONAVIRUS INFECTION; DISEASE ASSOCIATION; ENTEROVIRUS; HUMAN; HUMAN RHINOVIRUS; INFANT; LOWER RESPIRATORY TRACT INFECTION; MAJOR CLINICAL STUDY; MIXED INFECTION; NONHUMAN; PRESCHOOL CHILD; PRIORITY JOURNAL; RESPIRATORY VIRUS; SCHOOL CHILD; SEASONAL VARIATION; SPECIES DISTRIBUTION; UPPER RESPIRATORY TRACT INFECTION; VIRUS CELL INTERACTION; VIRUS DETECTION; VIRUS LOAD;

ADOLESCENT; ADULT; AGED; AGED, 80 AND OVER; CHILD; CHILD, PRESCHOOL; COINFECTION; CORONAVIRUS INFECTIONS; FEMALE; FRANCE; HOSPITALS; HUMANS; IMMUNOCOMPROMISED HOST; INCIDENCE; INFANT; INFANT, NEWBORN; MALE; MIDDLE AGED; RESPIRATORY TRACT INFECTIONS; VIRUSES; YOUNG ADULT;

EID: 84882769955     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01078-13     Document Type: Article

References (35)

1. Gaunt ER, Harvala H, McIntyre C, Templeton KE, Simmonds P. 2011. Disease burden of the most commonly detected respiratory viruses in hospitalized patients calculated using the disability adjusted life year (DALY) model. J. Clin. Virol. 52:215-221.
2. Heikkinen T, Jarvinen A. 2003. the Common Cold. Lancet 361:51-59.
3. Talbot HK, Falsey AR. 2010. The diagnosis of viral respiratory disease in older adults. Clin. Infect. Dis. 50:747-751.
4. Chemaly RF, Ghosh S, Bodey GP, Rohatgi N, Safdar A, Keating MJ, Champlin RE, Aguilera EA, Tarrand JJ, Raad II. 2006. Respiratory viral infections in adults with hematologic malignancies and human stem cell transplantation recipients: a retrospective study at a major cancer center. Medicine (Baltimore) 85:278-287.
5. Ruuskanen O, Lahti E, Jennings LC, Murdoch DR. 2011. Viral pneumonia. Lancet 377:1264-1275.
6. Mahony JB. 2008. Detection of respiratory viruses by molecular methods. Clin. Microbiol. Rev. 21:716-747.
7. Caliendo AM. 2011. Multiplex PCR and emerging technologies for the detection of respiratory pathogens. Clin. Infect. Dis. 52(Suppl 4):S326-S330.
8. Woo PC, Lau SK, Chu CM, Chan KH, Tsoi HW, Huang Y, Wong BH, Poon RW, Cai JJ, Luk WK, Poon LL, Wong SS, Guan Y, Peiris JS, Yuen KY. 2005. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J. Virol. 79:884-895.
9. van der Hoek L, Pyrc K, Jebbink MF, Vermeulen-Oost W, Berkhout RJ, Wolthers KC, Wertheim-van Dillen PM, Kaandorp J, Spaargaren J, Berkhout B. 2004. Identification of a new human coronavirus. Nat. Med. 10:368-373.
10. van den Hoogen BG, de Jong JC, Groen J, Kuiken T, de Groot R, Fouchier RA, Osterhaus AD. 2001. A newly discovered human pneumovirus isolated from young children with respiratory tract disease. Nat. Med. 7:719-724.
11. Brunstein JD, Cline CL, McKinney S, Thomas E. 2008. Evidence from multiplex molecular assays for complex multipathogen interactions in acute respiratory infections. J. Clin. Microbiol. 46:97-102.
12. Tanner H, Boxall E, Osman H. 2012. Respiratory viral infections during the 2009-2010 winter season in Central England, UK: incidence and patterns of multiple virus co-infections. Eur. J. Clin. Microbiol. Infect. Dis. 31:3001-3006.
13. Greer RM, McErlean P, Arden KE, Faux CE, Nitsche A, Lambert SB, Nissen MD, Sloots TP, Mackay IM. 2009. Do rhinoviruses reduce the probability of viral co-detection during acute respiratory tract infections? J. Clin. Virol. 45:10-15.
14. Dijkman R, Jebbink MF, Gaunt E, Rossen JW, Templeton KE, Kuijpers TW, van der Hoek L. 2012. The dominance of human coronavirus OC43 and NL63 infections in infants. J. Clin. Virol. 53:135-139.
15. Gaunt ER, Hardie A, Claas EC, Simmonds P, Templeton KE. 2010. Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method. J. Clin. Microbiol. 48:2940-2947.
16. Dominguez SR, Robinson CC, Holmes KV. 2009. Detection of four human coronaviruses in respiratory infections in children: a one-year study in Colorado. J. Med. Virol. 81:1597-1604.
17. Prill MM, Iwane MK, Edwards KM, Williams JV, Weinberg GA, Staat MA, Willby MJ, Talbot HK, Hall CB, Szilagyi PG, Griffin MR, Curns AT, Erdman DD. 2012. Human coronavirus in young children hospitalized for acute respiratory illness and asymptomatic controls. Pediatr. Infect. Dis. J. 31:235-240.
18. Talbot HK, Shepherd BE, Crowe JE, Jr, Griffin MR, Edwards KM, Podsiad AB, Tollefson SJ, Wright PF, Williams JV. 2009. The pediatric burden of human coronaviruses evaluated for twenty years. Pediatr. Infect. Dis. J. 28:682-687.
19. Messacar K, Robinson CC, Bagdure D, Curtis DJ, Glode MP, Dominguez SR. 2013. Rhino/enteroviruses in hospitalized children: a comparison to influenza viruses. J. Clin. Virol. 56:41-45.
20. Peltola V, Waris M, Osterback R, Susi P, Hyypia T, Ruuskanen O. 2008. Clinical effects of rhinovirus infections. J. Clin. Virol. 43:411-414.
21. Miller EK, Lu X, Erdman DD, Poehling KA, Zhu Y, Griffin MR, Hartert TV, Anderson LJ, Weinberg GA, Hall CB, Iwane MK, Edwards KM. 2007. Rhinovirus-associated hospitalizations in young children. J. Infect. Dis. 195:773-781.
22. Cheuk DK, Tang IW, Chan KH, Woo PC, Peiris MJ, Chiu SS. 2007. Rhinovirus infection in hospitalized children in Hong Kong: a prospective study. Pediatr. Infect. Dis. J. 26:995-1000.
23. Jennings LC, Anderson TP, Beynon KA, Chua A, Laing RT, Werno AM, Young SA, Chambers ST, Murdoch DR. 2008. Incidence and characteristics of viral community-acquired pneumonia in adults. Thorax 63:42-48.
24. Peiris JS, Guan Y, Yuen KY. 2004. Severe acute respiratory syndrome. Nat. Med. 10:S88-S97.
25. Zaki AM, van Boheemen S, Bestebroer TM, Osterhaus AD, Fouchier RA. 2012. Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. N. Engl. J. Med. 367:1814-1820.
26. Kuypers J, Martin ET, Heugel J, Wright N, Morrow R, Englund JA. 2007. Clinical disease in children associated with newly described coronavirus subtypes. Pediatrics 119:e70-e76.
27. Gerna G, Percivalle E, Sarasini A, Campanini G, Piralla A, Rovida F, Genini E, Marchi A, Baldanti F. 2007. Human respiratory coronavirus HKU1 versus other coronavirus infections in Italian hospitalised patients. J. Clin. Virol. 38:244-250.
28. Lieberman D, Shimoni A, Shemer-Avni Y, Keren-Naos A, Shtainberg R. 2010. Respiratory viruses in adults with community-acquired pneumonia. Chest 138:811-816.
29. Dare RK, Fry AM, Chittaganpitch M, Sawanpanyalert P, Olsen SJ, Erdman DD. 2007. Human coronavirus infections in rural Thailand: a comprehensive study using real-time reverse-transcription polymerase chain reaction assays. J. Infect. Dis. 196:1321-1328.
30. Cui LJ, Zhang C, Zhang T, Lu RJ, Xie ZD, Zhang LL, Liu CY, Zhou WM, Ruan L, Ma XJ, Tan WJ.2011. Human coronaviruses HCoV-NL63 and HCoV-HKU1 in hospitalized children with acute respiratory infections in Beijing, China. Adv. Virol. 2011:129134. doi:10.1155/2011/129134.
31. Gerna G, Campanini G, Rovida F, Percivalle E, Sarasini A, Marchi A, Baldanti F. 2006. Genetic variability of human coronavirus OC43-, 229E-, and NL63-like strains and their association with lower respiratory tract infections of hospitalized infants and immunocompromised patients. J. Med. Virol. 78:938-949.
32. Falsey AR, McCann RM, Hall WJ, Criddle MM, Formica MA, Wycoff D, Kolassa JE. 1997. The"common cold" in frail older persons: impact of rhinovirus and coronavirus in a senior daycare center. J. Am. Geriatr. Soc. 45:706-711.
33. Johansson N, Kalin M, Tiveljung-Lindell A, Giske CG, Hedlund J. 2010. Etiology of community-acquired pneumonia: increased microbiological yield with new diagnostic methods. Clin. Infect. Dis. 50:202-209.
34. Vabret A, Dina J, Gouarin S, Petitjean J, Tripey V, Brouard J, Freymuth F. 2008. Human (non-severe acute respiratory syndrome) coronavirus infections in hospitalised children in France. J. Paediatr. Child Health 44:176-181.
35. Woo PC, Lau SK, Huang Y, Yuen KY. 2009. Coronavirus diversity, phylogeny and interspecies jumping. Exp. Biol. Med. (Maywood) 234: 1117-1127.