Behavioral diversity in microbes and low-dimensional phenotypic spaces

Proceedings of the National Academy of Sciences of the United States of America

Volumn 110, Issue 34, 2013, Pages 14018-14023

  Jordan, David ^a   Kuehn, Seppe ^a   Katifori, Eleni ^a,b   Leibler, Stanislas ^a,c  

^a ROCKEFELLER UNIVERSITY   (United States)

^b MAX PLANCK INSTITUTE FOR DYNAMICS AND SELF ORGANIZATION   (Germany)

^c INSTITUTE FOR ADVANCED STUDY   (United States)

Author keywords

Behavioral variation in microbes; Biological sciences; Systems biology

Indexed keywords

ARTICLE; CELL DIVISION; CONTROLLED STUDY; GENETIC VARIABILITY; HERITABILITY; INDIVIDUALITY; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; SWIMMING; TETRAHYMENA THERMOPHILA;

BEHAVIORAL VARIATION IN MICROBES; BIOLOGICAL SCIENCES; SYSTEMS BIOLOGY;

BIOLOGICAL EVOLUTION; INHERITANCE PATTERNS; MODELS, BIOLOGICAL; MODELS, STATISTICAL; MOVEMENT; PHENOTYPE; SYSTEMS BIOLOGY; TETRAHYMENA;

EID: 84882769857     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1308282110     Document Type: Article

References (27)

1. Thompson DAW (1917) On Growth and Form (Cambridge Univ Press, Cambridge, UK).
2. Campàs O, Mallarino R, Herrel A, Abzhanov A, Brenner MP (2010) Scaling and shear transformations capture beak shape variation in Darwin's finches. Proc Natl Acad Sci USA 107(8):3356-3360.
3. Shoval O, et al. (2012) Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space. Science 336(6085):1157-1160.
4. Raup DM, Michelson A (1965) Theoretical morphology of the coiled shell. Science 147(3663):1294-1295.
5. Prusinkiewicz P, Erasmus Y, Lane B, Harder LD, Coen E (2007) Evolution and development of inflorescence architectures. Science 316(5830):1452-1456.
6. Lapedes A, Farber R (2001) The geometry of shape space: Application to influenza. J Theor Biol 212(1):57-69.
7. Berg HC, Brown DA (1972) Chemotaxis in Escherichia coli analysed by three-dimensional tracking. Nature 239(5374):500-504.
8. Gray JM, Hill JJ, Bargmann CI (2005) A circuit for navigation in Caenorhabditis elegans. Proc Natl Acad Sci USA 102(9):3184-3191.
9. Umehara S, Inoue I, Wakamoto Y, Yasuda K (2007) Origin of individuality of two daughter cells during the division process examined by the simultaneous measurement of growth and swimming property using an on-chip single-cell cultivation system. Biophys J 93(3):1061-1067.
10. Min TL, et al. (2009) High-resolution, long-term characterization of bacterial motility using optical tweezers. Nat Methods 6(11):831-835.
11. Quake SR, Scherer A (2000) From micro- to nanofabrication with soft materials. Science 290(5496):1536-1540.
12. Lin J (2002) Divergence measures based on the Shannon entropy. IEEE Trans Inf Theory 37(1):145-151.
13. Cox TF, Cox MA (2001) Multidimensional Scaling (Chapman & Hall, London), 2nd Ed.
14. Williams CKI (2002) On a connection between kernel PCA and metric multidimensional scaling. Mach Learn 46(1):11-19.
15. Ben Arous J, Laffont S, Chatenay D, Brezina V (2009) Molecular and sensory basis of a food related two-state behavior in C. elegans. PLoS ONE 4(10):e7584.
16. Hastie T, Tibshirani R, Friedman J (2009) The Elements of Statistical Learning (Springer, Berlin).
17. Rasmussen L, Modeweg-Hansen L (1973) Cell multiplication in Tetrahymena cultures after addition of particulate material. J Cell Sci 12(1):275-286.
18. Szablewski L, et al. (1991) Tetrahymena thermophila: Growth in synthetic nutrient medium in the presence and absence of glucose. J Eukaryot Microbiol 38(1):62-65.
19. Bénichou O, Loverdo C, Moreau M (2011) Intermittent search strategies. Rev Mod Phys 83:81-129.
20. Li L, Cox EC, Flyvbjerg H (2011) 'Dicty dynamics': Dictyostelium motility as persistent random motion. Phys Biol 8(4):046006.
21. Gallagher T, Bjorness T, Greene R, You Y-J, Avery L (2013) The geometry of locomotive behavioral states in C. elegans. PLoS ONE 8(3):e59865.
22. Stadler BM, Stadler PF, Wagner GP, Fontana W (2001) The topology of the possible: Formal spaces underlying patterns of evolutionary change. J Theor Biol 213(2):241-274.
23. Gamel JW, Axelrod DE (1991) Inheritance and regression toward the mean in heterogeneous cell populations. Cell Prolif 24(3):281-292.
24. Sigal A, et al. (2006) Variability and memory of protein levels in human cells. Nature 444(7119):643-646.
25. Powell EO (1956) Growth rate and generation time of bacteria, with special reference to continuous culture. J Gen Microbiol 15(3):492-511.
26. Jaqaman K, et al. (2008) Robust single-particle tracking in live-cell time-lapse sequences. Nat Methods 5(8):695-702.
27. Freedman D, Diaconis P (1981) On the histogram as a density estimator: L 2 theory. Probab Theory Relat Fields 57(4):453-476.