Bovine Mammary Gene Expression Profiling during the Onset of Lactation

PLoS ONE

Volumn 8, Issue 8, 2013, Pages

  Gao, Yuanyuan ^a   Lin, Xueyan ^a   Shi, Kerong ^a   Yan, Zhengui ^a   Wang, Zhonghua ^a  

^a SHANDONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; MILK PROTEIN;

ANIMAL TISSUE; ARTICLE; COW; DNA LIBRARY; DNA SEQUENCE; GAIN OF FUNCTION MUTATION; GENE CLUSTER; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FUNCTION; GENETIC ASSOCIATION; GENETIC SCREENING; LACTATION; MAMMARY GLAND; MILK PRODUCTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PREGNANCY; PUERPERIUM; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION;

ALGORITHMS; ANIMALS; CATTLE; CLUSTER ANALYSIS; DAIRYING; DOWN-REGULATION; EPITHELIAL CELLS; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE LIBRARY; LACTATION; LIPID METABOLISM; MAMMARY GLANDS, ANIMAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PARTURITION; RNA; SEQUENCE ANALYSIS, DNA; TIME FACTORS;

EID: 84882718231     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0070393     Document Type: Article

References (54)

1. Coppock CE, Everett RW, Everett RP, Ainslie HR, (1974) Effect of dry period length on Holstein milk production and selected disorders at parturition. J Dairy Sci 57: 712-718 doi: 10.3168/jds.S0022-0302(74)84953-2.
2. Sorensen JT Enevoldsen C, (1991) Effect of dry period length on milk production in subsequent lactation. J Dairy Sci 74: 1277-1283 doi: 10.3168/jds.S0022-0302(91)78283-0.
3. Madsen TG, Nielsen MO, Andersen JB, Ingvartsen KL, (2008) Continuous lactation in dairy cows: Effect on milk production and mammary nutrient supply and extraction. J Dairy Sci 91: 1791-1801 doi: 10.3168/jds.2007-0905.
4. Barry JM (1970) Review of Lactogenesis ed. Reynolds M & Folley SJ Philadelphia: University of Pennsylvania Press.
5. Shamay A, Cohen N, Niwa M, Gertler A, (1988) Effect of insulin-like growth factor I on deoxyribonucleic acid synthesis and galactopoiesis in bovine undifferentiated and lactating mammary tissue in vitro. Endocrinology 123: 804-809 doi: 10.1210/endo-123-2-804.
6. Wheeler TT, Callaghan MR, Davis SR, Prosser CG, Wilkins RJ, (1995) Milk protein synthesis, gene expression, and hormonal responsiveness in primary cultures of mammary cells from lactating sheep. Exp Cell Res 217: 346-354 doi: 10.1006/excr.1995.1096.
7. Jones FE, Stern DF, (1999) Expression of dominant-negative ErbB2 in the mammary gland of transgenic mice reveals a role in lobuloalveolar development and lactation. Oncogene 18 (23):: 3481-3490 doi: 10.1038/sj.onc.1202698.
8. Hennighausen L, Robinson GW, (2005) Information networks in the mammary gland. Nat Rev Mol Cell Biol 6 (9):: 715-725 doi: 10.1038/nrm1714.
9. Bionaz M, Loor JJ, (2011) Gene networks driving bovine mammary protein synthesis during the lactation cycle. Bioinformatics and Biology Insights 5: 83-98 doi: 10.4137/BBI.S7003.
10. Anderson SM, Rudolph MC, McManaman JL, Neville MC, (2007) Key stages in mammary gland development secretory activation in the mammary gland: it's not just about milk protein synthesis!. Breast Cancer Res 9 (1):: 204 doi: 10.1186/bcr1653.
11. Lemay DG, Neville MC, Rudolph MC, Pollard KS, German JB, (2007) Gene regulatory networks in lactation: identification of global principles using bioinformatics. BMC Systems Biology 1: 56-80 doi: 10.1186/1752-0509-1-56.
12. Finucane KA, McFadden TB, Bond JP, Kennelly JJ, Zhao FQ, (2008) Onset of lactation in the bovine mammary gland: gene expression profiling indicates a strong inhibition of gene expression in cell proliferation. Funct Integr Genomics 8 (3):: 251-264 doi: 10.1007/s10142-008-0074-y.
13. Sorensen MT, Norgaard JV, Theil PK, Vestergaard M, Sejrsen K, (2006) Cell turnover and activity in mammary tissue during lactation and the dry period in dairy cows. J Dairy Sci 89: 4632-4639 doi: 10.3168/jds.S0022-0302(06)72513-9.
14. Anderson RR, Harness JR, Snead AF, Salah MS, (1981) Mammary growth pattern in goats during pregnancy and lactation. J Dairy Sci 64: 427-432 doi: 10.3168/jds.S0022-0302(81)82589-1.
15. Suchyta SP, Sipkovsky S, Halgren RG, Kruska R, Elftman M, et al. (2004) Bovine mammary gene expression profiling using a cDNA microarray enhanced for mammary-specific transcripts. Physiol Genomics 16: 8-18 doi: 10.1152/physiolgenomics.00028.2003.
16. Bionaz M, Loor JJ, (2008) Gene networks driving bovine milk fat synthesis during the lactation cycle. BMC Genomics 9: 366-387 doi: 10.1186/1471-2164-9-366.
17. t Hoen PA, Ariyurek Y, Thygesen HH, Vreugdenhil E, Vossen RH, et al. (2008) Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res 36: e141 doi: 10.1093/nar/gkn705.
18. BGI website. Available: http://www.genomics.org.cn/ Accessed 2013 Jun 26.
19. Morrissy AS, Morin RD, Delaney A, Zeng T, McDonald H, et al. (2009) Next-generation tag sequencing for cancer gene expression profiling. Genome Res 19: 1825-1835 doi: 10.1101/gr.094482.109.
20. NCBI website. Available: ftp://ftp.ncbi.nih.gov/genomes/Bos_taurus/Assembled_chromosomes/seq Accessed 2013 Jun 26.
21. Audic S, Claverie JM, (1997) The significance of digital gene expression profiles. Genome Res 7 (10):: 986-95 doi: 10.1101/gr.7.10.986.
22. Benjamini Y, Yekutieli D, (2001) The control of the false discovery rate in multiple testing under dependency. The Annals of Statistics 29: 1165-1188.
23. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25 (1):: 25-9 doi: 10.1038/75556.
24. Trajkovski I, Lavrac N, Tolar J, (2008) SEGS: search for enriched gene sets in microarray data. J Biomed Inform 41 (4):: 588-601 doi: 10.1016/j.jbi.2007.12.001.
25. Kanehisa M, Goto S, (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 28: 27-30 doi: 10.1093/nar/27.1.29.
26. Dennis G, Sherman BT, Hosack DA, Yang J, Gao W, et al. (2003) DIVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biology 4: R60 doi: 10.1186/gb-2003-4-9-r60.
27. Hovey RC, Trott JF, Vonderhaar BK, (2002) Establishing a framework for the functional mammary gland: from endocrinology to morphology. J Mammary Gland Biol Neoplasia 7: 17-38 doi: 10.1023/A:1015766322258.
28. Tucker HA, (2000) Hormones, mammary growth, and lactation: a 41-year perspective. J Dairy Sci 83: 874-884 doi: 10.3168/jds.S0022-0302(00)74951-4.
29. Schild L, Kellenberger S, (2001) Structure function relationships of ENaC and its role in sodium handling. Adv Exp Med Biol 502: 305.
30. Hieshima K, Ohtani H, Shibano M, Izawa D, Nakayama T, et al. (2012) CCL28 has dual roles in mucosal immunity as a chemokine with broad-spectrum antimicrobial activity. The Journal of Immunology 189 (10):: 1452-1461.
31. Sordillo LM, Shafer-Weaver K, DeRosa D, (1997) Immunobiology of the mammary gland. J Dairy Sci 80: 1851-1865 doi: 10.3168/jds.S0022-0302(97)76121-6.
32. Sordillo LM, Streicher KL, (2002) Mammary gland immunity and mastitis susceptibility. J Mammary Gland Biol Neoplasia 7: 135-146 doi: 10.1023/A:1020347818725.
33. Robinson GW, McKnight RA, Smith GH, Hennighausen L, (1995) Mammary epithelia cells undergo secretory differentiation in cycling virgins but require pregnancy for the establishment of terminal differentiation. Development (Camb., England) 121: 2079-2090.
34. Rosen JM, Woo SLC, Comstock JP, (1975) Regulation of casein messenger RNA during the development of the rat mammary gland. Biochemistry 14: 2895-2903 doi: 10.1007/s10911-009-9143-7.
35. Shuster RC, Houdebine LM, Gaye P, (1976) Studies on the synthesis of casein messenger RNA during pregnancy in the rabbit. Eur J Biochem 71: 193-199 doi: 10.1111/j.1432-1033.1976.tb11106.x.
36. Prizant RL, Barash I, (2008) Negative effects of the amino acids Lys, His, and Thr on S6K1 phosphorylation in mammary epithelial cell. J Cell Biochem 105: 1038-47 doi: 10.1002/jcb.21904.
37. Toerien CA, Trout DR, Cant JP, (2010) Nutritional stimulation of milk protein yield of cows is associated with changes in phosphorylation of mammary eukaryotic initiation factor 2 and ribosomal s6 kinase 1. J Nutr 140: 285-92 doi: 10.3945/jn.109.114033.
38. Galbaugh T, Cerrito MG, Jose CC, Cutler ML, (2006) EGF-induced activation of Akt results in mTOR-dependent p70S6 kinase phosphorylation and inhibition of HC11 cell lactogenic differentiation. BMC Cell Biol 7: 34 doi: 10.1186/1471-2121-7-34.
39. Jankiewicz M, Groner B, Desrivieres S, (2006) Mammalian target of rapamycin regulates the growth of mammary epithelial cells through the inhibitor of deoxyribonucleic acid binding Id1 and their functional differentiation through Id2. Mol Endocrinol 20: 2369-81 doi: 10.1210/me.2006-0071.
40. Moshel Y, Rhoads RE, Barash I, (2006) Role of amino acids in translational mechanisms governing milk protein synthesis in murine and ruminant mammary epithelial cells. J Cell Biochem. 98: 685-700 doi: 10.1002/jcb.20825.
41. Wickens M, Goodwin EB, Kimble J, Strickland S, Hentze M. Translational control of developmental decisions. In: Matthews M.B, Sonenberg N, Hershey JWB (eds.) (2000) Translational Control of Gene Expression. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press 295-370.
42. Liu X, Robinson GW, Wagner KU, Garrett L, Wynshaw-Boris A, et al. (1997) Stat5a is mandatory for adult mammary gland development and lactogenesis. Genes Dev 11: 179-186 doi: 10.1101/gad.11.2.179.
43. Barash I, (2006) Stat5 in the mammary gland: controlling normal development and cancer. J Cell Physiol 209: 305-13 doi: 10.1002/jcp.20771.
44. Yang J, Kennelly JJ, Baracos VE, (2000) The activity of transcription factor Stat5 responds to prolactin, growth hormone, and IGF-1 in rat and bovine mammary explants culture. J Anim Sci 78: 3114-25.
45. Yang J, Kennelly JJ, Baracos VE, (2000) Physiological levels of Stat5 DNA binding activity and protein in bovine mammary gland. J Anim Sci 78: 3126-34.
46. Wheeler TT, Broadhurst MK, Sadowski HB, Farr VC, Prosser CG, (2001) Stat5 phosphorylation status and DNA-binding activity in the bovine and murine mammary glands. Mol Cell Endocrinol 176: 39-48 doi: 10.1016/S0303-7207(01)00481-6.
47. Rudolph MC, Monks J, Burns V, Phistry M, Marians R, et al. (2010) Sterol regulatory element binding protein and dietary lipid regulation of fatty acid synthesis in the mammary epithelium. Am J Physiol Endocrinol Metab 299: E918-E927 doi: 10.1152/ajpendo.00376.2010.
48. Yadav P, Mukesh M, Kataria RS, Yadav A, Mohanty AK, et al. (2012) Semi-quantitative RT-PCR analysis of fat metabolism genes in mammary tissue of lactating and non-lactating water buffalo (Bubalus bubalis). Trop Anim Health Prod 44: 693-696 doi: 10.1007/s11250-011-9988-9.
49. Eberle D, Hegarty B, Bossard P, Ferre P, Foufelle F, (2004) SREBP transcription factor: master regulators of lipid homeostasis. Biochimie 86: 839-48 doi: 10.1016/j.biochi.2004.09.018.
50. Horton JD, Goldstein JL, Brown MS, (2002) SREBPs: Activators of the complete program of cholesterol and faty acid synthesis in the liver. J Clin Invest 109: 1125-1135 doi: 10.1172/JCI15593.
51. Travers MT, Vallance AJ, Gourlay HT, Gill CA, Klein I, et al. (2001) Promoter I of the ovine acety1-CoA carboxylase-alpha genea; An E-box motif at -114 in the proximal promoter binds upstream stimulatory factor (USF)-1 and USF-2 and acts as an insulin-response sequence in differentiating adipocytes. Biochem J 359: 273-284.
52. Lopez JM, Bennett MK, Sanchez HB, Rosenfeld JM, Osborne TF, (1996) Sterol regulation of acetyl coenzyme A carboxylase: A mechanism for coordinate control of cellular lipid. Proc Natl Acad Sci U S A 93: 1049-1053 doi: 10.1073/pnas.93.3.1049.
53. Oh SY, Park SK, Kim JW, Ahn YH, Park SW, et al. (2003) Acetyl-CoA carboxylase beta gene is regulated by sterol regulatory element-binding protein-1 in liver. J Biol Chem 278: 28410-28417.
54. Schweizer M, Roder K, Zhang L, Wolf SS, (2002) Transcription factors acting on the promoter of the rat fatty acid synthase gene. Biochem Soc Trans 30: 1070-1072 doi: 10.1042/bst0301070.