메뉴 건너뛰기




Volumn 27, Issue 16, 2013, Pages 1834-1844

Novel proteomic approach (PUNCH-P) reveals cell cycle-specific fluctuations in mRNA translation

Author keywords

Cell cycle; Protein synthesis; Proteomics; PUNCH P; Puromycin; Translation

Indexed keywords

AMINO ACID; COMPLEMENTARY DNA; ISOTOPE; MESSENGER RNA; PEPTIDE; PROTEOME; PUROMYCIN; STREPTAVIDIN;

EID: 84882701594     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.219105.113     Document Type: Article
Times cited : (79)

References (55)
  • 1
    • 0015009391 scopus 로고
    • Dissociation of mammalian polyribosomes into subunits by puromycin
    • Blobel G., Sabatini D. 1971. Dissociation of mammalian polyribosomes into subunits by puromycin. Proc Natl Acad Sci 68: 390-394.
    • (1971) Proc Natl Acad Sci , vol.68 , pp. 390-394
    • Blobel, G.1    Sabatini, D.2
  • 2
    • 0036892346 scopus 로고    scopus 로고
    • Translational control of gene expression and disease
    • Calkhoven CF, Muller C, Leutz A. 2002. Translational control of gene expression and disease. Trends Mol Med 8: 577-583.
    • (2002) Trends Mol Med , vol.8 , pp. 577-583
    • Calkhoven, C.F.1    Muller, C.2    Leutz, A.3
  • 3
    • 0034687228 scopus 로고    scopus 로고
    • Synthesis of the posterior determinant Nanos is spatially restricted by a novel cotranslational regulatory mechanism
    • Clark I.E., Wyckoff D, Gavis ER. 2000. Synthesis of the posterior determinant Nanos is spatially restricted by a novel cotranslational regulatory mechanism. Curr Biol 10: 1311-1314.
    • (2000) Curr Biol , vol.10 , pp. 1311-1314
    • Clark, I.E.1    Wyckoff, D.2    Gavis, E.R.3
  • 4
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox J., Mann M. 2008. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 26: 1367-1372.
    • (2008) Nat Biotechnol , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 9
    • 33745464039 scopus 로고    scopus 로고
    • Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT)
    • Dieterich D.C., Link AJ, Graumann J, Tirrell DA, Schuman EM. 2006. Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT). Proc Natl Acad Sci 103: 9482-9487.
    • (2006) Proc Natl Acad Sci , vol.103 , pp. 9482-9487
    • Dieterich, D.C.1    Link, A.J.2    Graumann, J.3    Tirrell, D.A.4    Schuman, E.M.5
  • 10
    • 84867362036 scopus 로고    scopus 로고
    • Selective enrichment of newly synthesized proteins for quantitative secretome analysis
    • Eichelbaum K., Winter M, Diaz MB, Herzig S, Krijgsveld J. 2012. Selective enrichment of newly synthesized proteins for quantitative secretome analysis. Nat Biotechnol 30: 984-990.
    • (2012) Nat Biotechnol , vol.30 , pp. 984-990
    • Eichelbaum, K.1    Winter, M.2    Diaz, M.B.3    Herzig, S.4    Krijgsveld, J.5
  • 11
    • 18644381734 scopus 로고    scopus 로고
    • ATF3 induction following DNA damage is regulated by distinct signaling pathways and over-expression of ATF3 protein suppresses cells growth
    • Fan F., Jin S, Amundson SA, Tong T, Fan W, Zhao H, Zhu X, Mazzacurati L., Li X, Petrik KL, et al. 2002. ATF3 induction following DNA damage is regulated by distinct signaling pathways and over-expression of ATF3 protein suppresses cells growth. Oncogene 21: 7488-7496.
    • (2002) Oncogene , vol.21 , pp. 7488-7496
    • Fan, F.1    Jin, S.2    Amundson, S.A.3    Tong, T.4    Fan, W.5    Zhao, H.6    Zhu, X.7    Mazzacurati, L.8    Li, X.9    Petrik, K.L.10
  • 12
    • 48249116333 scopus 로고    scopus 로고
    • Posttranscriptional regulation of mammalian circadian clock output
    • Garbarino-Pico E, Green CB. 2007. Posttranscriptional regulation of mammalian circadian clock output. Cold Spring Harb Symp Quant Biol 72: 145-156.
    • (2007) Cold Spring Harb Symp Quant Biol , vol.72 , pp. 145-156
    • Garbarino-Pico, E.1    Green, C.B.2
  • 13
    • 0034721667 scopus 로고    scopus 로고
    • CPEB, maskin, and cyclin B1 mRNA at the mitotic apparatus: Implications for local translational control of cell division
    • Groisman I., Huang YS, Mendez R, Cao Q, Theurkauf W, Richter JD. 2000. CPEB, maskin, and cyclin B1 mRNA at the mitotic apparatus: Implications for local translational control of cell division. Cell 103: 435-447.
    • (2000) Cell , vol.103 , pp. 435-447
    • Groisman, I.1    Huang, Y.S.2    Mendez, R.3    Cao, Q.4    Theurkauf, W.5    Richter, J.D.6
  • 14
    • 77955644289 scopus 로고    scopus 로고
    • Mammalian microRNAs predominantly act to decrease target mRNA levels
    • Guo H., Ingolia NT, Weissman JS, Bartel DP. 2010. Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466: 835-840.
    • (2010) Nature , vol.466 , pp. 835-840
    • Guo, H.1    Ingolia, N.T.2    Weissman, J.S.3    Bartel, D.P.4
  • 15
    • 0017802498 scopus 로고
    • The mode of action of a sarcin and a novel assay of the puromycin reaction
    • Hobden A.N., Cundliffe E. 1978. The mode of action of a sarcin and a novel assay of the puromycin reaction. Biochem J 170: 57-61.
    • (1978) Biochem J , vol.170 , pp. 57-61
    • Hobden, A.N.1    Cundliffe, E.2
  • 16
    • 17144424622 scopus 로고    scopus 로고
    • Translational control in stress and apoptosis
    • Holcik M., Sonenberg N. 2005. Translational control in stress and apoptosis. Nat Rev Mol Cell Biol 6: 318-327.
    • (2005) Nat Rev Mol Cell Biol , vol.6 , pp. 318-327
    • Holcik, M.1    Sonenberg, N.2
  • 19
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia N.T., Ghaemmaghami S, Newman JR, Weissman JS. 2009. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324: 218-223.
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.3    Weissman, J.S.4
  • 21
    • 0037039298 scopus 로고    scopus 로고
    • Incorporation of azides into recombinant proteins for chemoselective modification by the Staudinger ligation
    • Kiick K.L., Saxon E, Tirrell DA, Bertozzi CR. 2002. Incorporation of azides into recombinant proteins for chemoselective modification by the Staudinger ligation. Proc Natl Acad Sci 99: 19-24.
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 19-24
    • Kiick, K.L.1    Saxon, E.2    Tirrell, D.A.3    Bertozzi, C.R.4
  • 22
    • 0036500555 scopus 로고    scopus 로고
    • Involvement of the cohesin protein, Smc1, in Atm-dependent and independent responses to DNA damage
    • Kim S.T., Xu B, Kastan MB. 2002. Involvement of the cohesin protein, Smc1, in Atm-dependent and independent responses to DNA damage. Genes Dev 16: 560-570.
    • (2002) Genes Dev , vol.16 , pp. 560-570
    • Kim, S.T.1    Xu, B.2    Kastan, M.B.3
  • 24
    • 84866267681 scopus 로고    scopus 로고
    • Global mapping of translation initiation sites in mammalian cells at singlenucleotide resolution
    • Lee S., Liu B, Huang SX, Shen B, Qian SB. 2012. Global mapping of translation initiation sites in mammalian cells at singlenucleotide resolution. Proc Natl Acad Sci 109: E2424-E2432.
    • (2012) Proc Natl Acad Sci , vol.109
    • Lee, S.1    Liu, B.2    Huang, S.X.3    Shen, B.4    Qian, S.B.5
  • 25
    • 84873097376 scopus 로고    scopus 로고
    • PARP-2 regulates cell cycle-related genes through histone deacetylation and methylation independently of poly(ADP-ribosyl)ation
    • Liang Y.C., Hsu CY, Yao YL, Yang WM. 2013. PARP-2 regulates cell cycle-related genes through histone deacetylation and methylation independently of poly(ADP-ribosyl)ation. Biochem Biophys Res Commun 431: 58-64.
    • (2013) Biochem Biophys Res Commun , vol.431 , pp. 58-64
    • Liang, Y.C.1    Hsu, C.Y.2    Yao, Y.L.3    Yang, W.M.4
  • 26
    • 65349102972 scopus 로고    scopus 로고
    • The decision to enter mitosis: Feedback and redundancy in the mitotic entry network
    • Lindqvist A., Rodriguez-Bravo V, Medema RH. 2009. The decision to enter mitosis: Feedback and redundancy in the mitotic entry network. J Cell Biol 185: 193-202.
    • (2009) J Cell Biol , vol.185 , pp. 193-202
    • Lindqvist, A.1    Rodriguez-Bravo, V.2    Medema, R.H.3
  • 27
    • 84862908426 scopus 로고    scopus 로고
    • Imaging protein synthesis in cells and tissues with an alkyne analog of puromycin
    • Liu J., Xu Y, Stoleru D, Salic A. 2012. Imaging protein synthesis in cells and tissues with an alkyne analog of puromycin. Proc Natl Acad Sci 109: 413-418.
    • (2012) Proc Natl Acad Sci , vol.109 , pp. 413-418
    • Liu, J.1    Xu, Y.2    Stoleru, D.3    Salic, A.4
  • 28
    • 22344439942 scopus 로고    scopus 로고
    • Dynamic molecular linkers of the genome: The first decade of SMC proteins
    • Losada A., Hirano T. 2005. Dynamic molecular linkers of the genome: The first decade of SMC proteins. Genes Dev 19: 1269-1287.
    • (2005) Genes Dev , vol.19 , pp. 1269-1287
    • Losada, A.1    Hirano, T.2
  • 29
    • 0036898897 scopus 로고    scopus 로고
    • Histone mRNA expression: Multiple levels of cell cycle regulation and important developmental consequences
    • Marzluff W.F., Duronio RJ. 2002. Histone mRNA expression: Multiple levels of cell cycle regulation and important developmental consequences. Curr Opin Cell Biol 14: 692-699.
    • (2002) Curr Opin Cell Biol , vol.14 , pp. 692-699
    • Marzluff, W.F.1    Duronio, R.J.2
  • 30
    • 0035912738 scopus 로고    scopus 로고
    • All kinesin superfamily protein, KIF, genes in mouse and human
    • Miki H., Setou M, Kaneshiro K, Hirokawa N. 2001. All kinesin superfamily protein, KIF, genes in mouse and human. Proc Natl Acad Sci 98: 7004-7011.
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 7004-7011
    • Miki, H.1    Setou, M.2    Kaneshiro, K.3    Hirokawa, N.4
  • 31
    • 0030610530 scopus 로고    scopus 로고
    • Cyclin ET, a new splice variant of human cyclin E with a unique expression pattern during cell cycle progression and differentiation
    • Mumberg D., Wick M, Burger C, Haas K, Funk M, Muller R. 1997. Cyclin ET, a new splice variant of human cyclin E with a unique expression pattern during cell cycle progression and differentiation. Nucleic Acids Res 25: 2098-2105.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2098-2105
    • Mumberg, D.1    Wick, M.2    Burger, C.3    Haas, K.4    Funk, M.5    Muller, R.6
  • 33
    • 33845354027 scopus 로고    scopus 로고
    • Human let-7a miRNA blocks protein production on actively translating polyribosomes
    • Nottrott S., Simard MJ, Richter JD. 2006. Human let-7a miRNA blocks protein production on actively translating polyribosomes. Nat Struct Mol Biol 13: 1108-1114.
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 1108-1114
    • Nottrott, S.1    Simard, M.J.2    Richter, J.D.3
  • 34
    • 0015195582 scopus 로고
    • Inhibitors of ribosome functions
    • Pestka S. 1971. Inhibitors of ribosome functions. Annu Rev Microbiol 25: 487-562.
    • (1971) Annu Rev Microbiol , vol.25 , pp. 487-562
    • Pestka, S.1
  • 35
    • 32444436121 scopus 로고    scopus 로고
    • Short RNAs repress translation after initiation in mammalian cells
    • Petersen C.P., Bordeleau ME, Pelletier J, Sharp PA. 2006. Short RNAs repress translation after initiation in mammalian cells. Mol Cell 21: 533-542.
    • (2006) Mol Cell , vol.21 , pp. 533-542
    • Petersen, C.P.1    Bordeleau, M.E.2    Pelletier, J.3    Sharp, P.A.4
  • 36
    • 0024427288 scopus 로고
    • Isolation of a human cyclin cDNA: Evidence for cyclin mRNA and protein regulation in the cell cycle and for interaction with p34cdc2
    • Pines J., Hunter T. 1989. Isolation of a human cyclin cDNA: Evidence for cyclin mRNA and protein regulation in the cell cycle and for interaction with p34cdc2. Cell 58: 833-846.
    • (1989) Cell , vol.58 , pp. 833-846
    • Pines, J.1    Hunter, T.2
  • 37
    • 0014335019 scopus 로고
    • Mitotic duration and its variability in relation to temperature in HeLa cells
    • Rao P.N., Engelberg J. 1968. Mitotic duration and its variability in relation to temperature in HeLa cells. Exp Cell Res 52: 198-208.
    • (1968) Exp Cell Res , vol.52 , pp. 198-208
    • Rao, P.N.1    Engelberg, J.2
  • 38
    • 34548183872 scopus 로고    scopus 로고
    • Protocol for micropurification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
    • Rappsilber J., Mann M, Ishihama Y. 2007. Protocol for micropurification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nat Protoc 2: 1896-1906.
    • (2007) Nat Protoc , vol.2 , pp. 1896-1906
    • Rappsilber, J.1    Mann, M.2    Ishihama, Y.3
  • 39
    • 0026599596 scopus 로고
    • Transcription factor AP-1 activity is required for initiation of DNA synthesis and is lost during cellular aging
    • Riabowol K., Schiff J, Gilman MZ. 1992. Transcription factor AP-1 activity is required for initiation of DNA synthesis and is lost during cellular aging. Proc Natl Acad Sci 89: 157-161.
    • (1992) Proc Natl Acad Sci , vol.89 , pp. 157-161
    • Riabowol, K.1    Schiff, J.2    Gilman, M.Z.3
  • 40
    • 0020646513 scopus 로고
    • Biotinlabeled proteins in cultured human skin fibroblasts from patients with pyruvate carboxylase deficiency
    • Robinson B.H., Oei J, Saunders M, Gravel R. 1983. Biotinlabeled proteins in cultured human skin fibroblasts from patients with pyruvate carboxylase deficiency. J Biol Chem 258: 6660-6664.
    • (1983) J Biol Chem , vol.258 , pp. 6660-6664
    • Robinson, B.H.1    Oei, J.2    Saunders, M.3    Gravel, R.4
  • 41
    • 3543072968 scopus 로고    scopus 로고
    • Purification of biotinylated proteins on streptavidin resin: A protocol for quantitative elution
    • Rybak J.N., Scheurer SB, Neri D, Elia G. 2004. Purification of biotinylated proteins on streptavidin resin: A protocol for quantitative elution. Proteomics 4: 2296-2299.
    • (2004) Proteomics , vol.4 , pp. 2296-2299
    • Rybak, J.N.1    Scheurer, S.B.2    Neri, D.3    Elia, G.4
  • 42
    • 63949084607 scopus 로고    scopus 로고
    • SUnSET, a nonradioactive method to monitor protein synthesis
    • Schmidt E.K., Clavarino G, Ceppi M, Pierre P. 2009. SUnSET, a nonradioactive method to monitor protein synthesis. Nat Methods 6: 275-277.
    • (2009) Nat Methods , vol.6 , pp. 275-277
    • Schmidt, E.K.1    Clavarino, G.2    Ceppi, M.3    Pierre, P.4
  • 43
    • 59449085150 scopus 로고    scopus 로고
    • Global analysis of cellular protein translation by pulsed SILAC
    • Schwanhausser B., Gossen M, Dittmar G, Selbach M. 2009. Global analysis of cellular protein translation by pulsed SILAC. Proteomics 9: 205-209.
    • (2009) Proteomics , vol.9 , pp. 205-209
    • Schwanhausser, B.1    Gossen, M.2    Dittmar, G.3    Selbach, M.4
  • 45
    • 80053164461 scopus 로고    scopus 로고
    • A time-series method for automated measurement of changes in mitotic and interphase duration from time-lapse movies
    • Sigoillot F.D., Huckins JF, Li F, Zhou X, Wong ST, King RW. 2011. A time-series method for automated measurement of changes in mitotic and interphase duration from time-lapse movies. PLoS ONE 6: e25511.
    • (2011) PLoS ONE , vol.6
    • Sigoillot, F.D.1    Huckins, J.F.2    Li, F.3    Zhou, X.4    Wong, S.T.5    King, R.W.6
  • 46
    • 34748870653 scopus 로고    scopus 로고
    • Ribosomal slowdown mediates translational arrest during cellular division
    • Sivan G., Kedersha N, Elroy-Stein O. 2007. Ribosomal slowdown mediates translational arrest during cellular division. Mol Cell Biol 27: 6639-6646.
    • (2007) Mol Cell Biol , vol.27 , pp. 6639-6646
    • Sivan, G.1    Kedersha, N.2    Elroy-Stein, O.3
  • 47
    • 80051522305 scopus 로고    scopus 로고
    • Mitotic modulation of translation elongation factor 1 leads to hindered tRNA delivery to ribosomes
    • Sivan G., Aviner R, Elroy-Stein O. 2011. Mitotic modulation of translation elongation factor 1 leads to hindered tRNA delivery to ribosomes. J Biol Chem286: 27927-27935.
    • (2011) J Biol Chem , vol.286 , pp. 27927-27935
    • Sivan, G.1    Aviner, R.2    Elroy-Stein, O.3
  • 48
    • 3342935872 scopus 로고    scopus 로고
    • A general approach to detect protein expression in vivo using fluorescent puromycin conjugates
    • Starck S.R., Green HM, Alberola-Ila J, Roberts RW. 2004. A general approach to detect protein expression in vivo using fluorescent puromycin conjugates. Chem Biol 11: 999-1008.
    • (2004) Chem Biol , vol.11 , pp. 999-1008
    • Starck, S.R.1    Green, H.M.2    Alberola-Ila, J.3    Roberts, R.W.4
  • 49
    • 84865105401 scopus 로고    scopus 로고
    • Rhn1, a nuclear protein, is required for suppression of meiotic mRNAs in mitotically dividing fission yeast
    • Sugiyama T., Sugioka-Sugiyama R, Hada K, Niwa R. 2012. Rhn1, a nuclear protein, is required for suppression of meiotic mRNAs in mitotically dividing fission yeast. PLoS ONE 7: e42962.
    • (2012) PLoS ONE , vol.7
    • Sugiyama, T.1    Sugioka-Sugiyama, R.2    Hada, K.3    Niwa, R.4
  • 50
    • 33645703441 scopus 로고    scopus 로고
    • A tandem affinity tag for two-step purification under fully denaturing conditions: Application in ubiquitin profiling and protein complex identification combined with in vivocross-linking
    • Tagwerker C., Flick K, Cui M, Guerrero C, Dou Y, Auer B, Baldi P, Huang L, Kaiser P. 2006. A tandem affinity tag for two-step purification under fully denaturing conditions: Application in ubiquitin profiling and protein complex identification combined with in vivocross-linking. Mol Cell Proteomics 5: 737-748.
    • (2006) Mol Cell Proteomics , vol.5 , pp. 737-748
    • Tagwerker, C.1    Flick, K.2    Cui, M.3    Guerrero, C.4    Dou, Y.5    Auer, B.6    Baldi, P.7    Huang, L.8    Kaiser, P.9
  • 51
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher V.G., Tibshirani R, Chu G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci 98: 5116-5121.
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 52
    • 0015117263 scopus 로고
    • Regulation of protein synthesis initiation in HeLa cells deprived of single essential amino acids
    • Vaughan MH Jr, Pawlowski PJ, Forchhammer J. 1971. Regulation of protein synthesis initiation in HeLa cells deprived of single essential amino acids. Proc Natl Acad Sci 68: 2057-2061.
    • (1971) Proc Natl Acad Sci , vol.68 , pp. 2057-2061
    • Vaughan Jr., M.H.1    Pawlowski, P.J.2    Forchhammer, J.3
  • 53
    • 84858439862 scopus 로고    scopus 로고
    • Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
    • Vogel C., Marcotte EM. 2012. Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat Rev Genet 13: 227-232.
    • (2012) Nat Rev Genet , vol.13 , pp. 227-232
    • Vogel, C.1    Marcotte, E.M.2
  • 54
    • 0034128749 scopus 로고    scopus 로고
    • Stem-loop binding protein, the protein that binds the 39 end of histone mRNA, is cell cycle regulated by both translational and posttranslational mechanisms
    • Whitfield M.L., Zheng LX, Baldwin A, Ohta T, Hurt MM, Marzluff WF. 2000. Stem-loop binding protein, the protein that binds the 39 end of histone mRNA, is cell cycle regulated by both translational and posttranslational mechanisms. Mol Cell Biol 20: 4188-4198.
    • (2000) Mol Cell Biol , vol.20 , pp. 4188-4198
    • Whitfield, M.L.1    Zheng, L.X.2    Baldwin, A.3    Ohta, T.4    Hurt, M.M.5    Marzluff, W.F.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.