-
1
-
-
79959575331
-
A new measure for similarity searching in DNA sequences
-
Y. Zhang, W. Chen, A new measure for similarity searching in DNA sequences, MATCH Commun. Math. Comput. Chem. 65 (2011) 477-488.
-
(2011)
MATCH Commun. Math. Comput. Chem.
, vol.65
, pp. 477-488
-
-
Zhang, Y.1
Chen, W.2
-
2
-
-
78650926937
-
A dissimilarity measure based on free energy of DNA nearest-neighbor interaction
-
Y. Zhang, W. Chen, A dissimilarity measure based on free energy of DNA nearest-neighbor interaction, J. Biomol. Struct. Dyn. 28 (2011) 557-565.
-
(2011)
J. Biomol. Struct. Dyn.
, vol.28
, pp. 557-565
-
-
Zhang, Y.1
Chen, W.2
-
3
-
-
79751478465
-
New invariant of DNA sequences based on a new matrix representation
-
Y. Liu, Y. Zhang, New invariant of DNA sequences based on a new matrix representation, Comb. Chem. High T. Scr. 14 (2011) 61-71.
-
(2011)
Comb. Chem. High T. Scr.
, vol.14
, pp. 61-71
-
-
Liu, Y.1
Zhang, Y.2
-
4
-
-
77951130055
-
Comparisons of RNA secondary structures based on LZ complexity
-
Y. Zhang, W. Chen, Comparisons of RNA secondary structures based on LZ complexity, MATCH Commun. Math. Comput. Chem. 63 (2010) 513-528.
-
(2010)
MATCH Commun. Math. Comput. Chem.
, vol.63
, pp. 513-528
-
-
Zhang, Y.1
Chen, W.2
-
5
-
-
67249156619
-
Alignment-free comparison of protein sequences based on reduced amino acid alphabets
-
C. Jia, T. Liu, X. Zhang, H. Pu, Q. Yang, Alignment-free comparison of protein sequences based on reduced amino acid alphabets, J. Biomol. Struct. Dyn. 26 (2009) 763-769.
-
(2009)
J. Biomol. Struct. Dyn.
, vol.26
, pp. 763-769
-
-
Jia, C.1
Liu, T.2
Zhang, X.3
Pu, H.4
Yang, Q.5
-
6
-
-
0035656688
-
Non-coding RNA genes and the modern RNA World Nature
-
S. R. Eddy, Non-coding RNA genes and the modern RNA world, Nature Rev. Genet. 2 (2001) 919-929.
-
(2001)
Rev. Genet.
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
7
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
G. Storz, An expanding universe of noncoding RNAs, Science 296 (2002) 1260-1263.
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
9
-
-
33846647635
-
Comparing similarity between RNA strings
-
V. Bafna, S. Muthukrishnan, R. Ravi, Comparing similarity between RNA strings, 6th Annual Symposium on Combinatorial Pattern Matching, 937 (1995) 1-16.
-
(1995)
6th Annual Symposium on Combinatorial Pattern Matching
, vol.937
, pp. 1-16
-
-
Bafna, V.1
Muthukrishnan, S.2
Ravi, R.3
-
10
-
-
0027982394
-
RNAlign program: Alignment of RNA sequences using both primary and secondary structures
-
F. Corpet, B. Michot, RNAlign program: alignment of RNA sequences using both primary and secondary structures, Comput. Appl. Biosci. 10 (1994) 389-399.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 389-399
-
-
Corpet, F.1
Michot, B.2
-
11
-
-
0024061490
-
An algorithm for comparing multiple RNA secondary structures
-
B. Shapiro, An algorithm for comparing multiple RNA secondary structures, Comput. Appl. Biosci. 4 (1988) 387-393.
-
(1988)
Comput. Appl. Biosci.
, vol.4
, pp. 387-393
-
-
Shapiro, B.1
-
12
-
-
0024348264
-
RNA secondary structures: Comparison and determination of frequently recurring substructures by consensus
-
S. Y. Le, R. Nussinov, J. V. Maizel, RNA secondary structures: comparison and determination of frequently recurring substructures by consensus, Comput. Appl. Biosci. 5 (1989) 205-210.
-
(1989)
Comput. Appl. Biosci.
, vol.5
, pp. 205-210
-
-
Le, S.Y.1
Nussinov, R.2
Maizel, J.V.3
-
13
-
-
0024386096
-
Tree graphs of RNA secondary structures and their comparisons
-
S. Y. Le, R. Nussinov, J. V. Maizel, Tree graphs of RNA secondary structures and their comparisons, Comput. Biomed. Res. 22 (1989) 461-473.
-
(1989)
Comput. Biomed. Res.
, vol.22
, pp. 461-473
-
-
Le, S.Y.1
Nussinov, R.2
Maizel, J.V.3
-
14
-
-
0025187499
-
Comparing multiple RNA secondary structures using tree comparisons
-
B. Shapiro, K. Zhang, Comparing multiple RNA secondary structures using tree comparisons, Comput. Appl. Biosci. 6 (1990) 309-318.
-
(1990)
Comput. Appl. Biosci.
, vol.6
, pp. 309-318
-
-
Shapiro, B.1
Zhang, K.2
-
15
-
-
0041387617
-
RNA secondary structure comparison: Exact analysis of the Zhang-Shasha tree edit algorithm
-
S. Dulucq, L. Tichit, RNA secondary structure comparison: exact analysis of the Zhang-Shasha tree edit algorithm, Theor. Comput. Sci. 306 (2003) 471-484.
-
(2003)
Theor. Comput. Sci.
, vol.306
, pp. 471-484
-
-
Dulucq, S.1
Tichit, L.2
-
16
-
-
2442647664
-
A 3D Graphical representation of RNA secondary structure
-
B. Liao, T. Wang, A 3D Graphical representation of RNA secondary structure, J. Biomol. Struc. Dyn. 21 (2004) 827-832.
-
(2004)
J. Biomol. Struc. Dyn.
, vol.21
, pp. 827-832
-
-
Liao, B.1
Wang, T.2
-
17
-
-
33847612032
-
On 3D graphical representation of RNA secondary structure
-
Y. Zhang, On 3D graphical representation of RNA secondary structure, MATCH Commun. Math. Comput. Chem. 57 (2007) 157-168.
-
(2007)
MATCH Commun. Math. Comput. Chem.
, vol.57
, pp. 157-168
-
-
Zhang, Y.1
-
18
-
-
34547172661
-
On 2D graphical representation of RNA secondary structure
-
Y. Zhang, On 2D graphical representation of RNA secondary structure, MATCH Commun. Math. Comput. Chem. 57 (2007) 697-710.
-
(2007)
MATCH Commun. Math. Comput. Chem.
, vol.57
, pp. 697-710
-
-
Zhang, Y.1
-
19
-
-
40849135384
-
A 3D graphical representation of RNA secondary structures based on chaos game representation
-
J. Feng, T. Wang, A 3D graphical representation of RNA secondary structures based on chaos game representation, Chem. Phys. Lett. 454 (2008) 355-361.
-
(2008)
Chem. Phys. Lett.
, vol.454
, pp. 355-361
-
-
Feng, J.1
Wang, T.2
-
21
-
-
0035102453
-
An information-based sequence distance and its application to whole mitochondrial genome phy-logeny
-
M. Li, J. H. Badger, X. Chen, S. Kwong, P. Kearney, H. Zhang, An information-based sequence distance and its application to whole mitochondrial genome phy-logeny, Bioinformatics 17 (2001) 149-154.
-
(2001)
Bioinformatics 17
, pp. 149-154
-
-
Li, M.1
Badger, J.H.2
Chen, X.3
Kwong, S.4
Kearney, P.5
Zhang, H.6
-
22
-
-
0001941057
-
A compression algorithm for DNA sequences and its applications in genome comparison
-
X. Chen, S. Kwong, M. Li, A compression algorithm for DNA sequences and its applications in genome comparison, Genome Inform. Ser. Workshop Genome Inform. 10 (1999) 51-61.
-
(1999)
Genome Inform. Ser. Workshop Genome Inform.
, vol.10
, pp. 51-61
-
-
Chen, X.1
Kwong, S.2
Li, M.3
-
23
-
-
20744444195
-
DNA data compression in the post genome era
-
H. Sato, T. Yoshioka, A. Konagaya, T. Toyoda, DNA data compression in the post genome era, Genome Informatics 12 (2001) 512-514.
-
(2001)
Genome Informatics
, vol.12
, pp. 512-514
-
-
Sato, H.1
Yoshioka, T.2
Konagaya, A.3
Toyoda, T.4
-
24
-
-
0018019231
-
Compression of individual sequences by variable rate coding inform
-
J. Ziv, A. Lempel, Compression of individual sequences by variable rate coding, Inform. Theory IEEE Trans. 24 (1978) 530-536.
-
(1978)
Theory IEEE Trans.
, vol.24
, pp. 530-536
-
-
Ziv, J.1
Lempel, A.2
-
25
-
-
0242643741
-
A new sequence distance measure for phylogenetic tree construction
-
H. H. Otu, K. Sayood, A new sequence distance measure for phylogenetic tree construction, Bioinformatics 19 (2003) 2122-2130.
-
(2003)
Bioinformatics
, vol.19
, pp. 2122-2130
-
-
Otu, H.H.1
Sayood, K.2
-
26
-
-
33751162430
-
A method for rapid similarity analysis of RNA secondary structures
-
N. Liu, T. Wang, A method for rapid similarity analysis of RNA secondary structures, BMC Bioinformatics 7 (2006) 493-503.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 493-503
-
-
Liu, N.1
Wang, T.2
-
27
-
-
33846578696
-
Similarity of RNA secondary structures
-
C. Li, A. H. Wang, L. Xing Similarity of RNA secondary structures, J. Comput. Chem. 28 (2007) 508-512.
-
(2007)
J. Comput. Chem.
, Issue.28
, pp. 508-512
-
-
Li, C.1
Wang, A.H.2
Xing, L.3
-
29
-
-
8944242601
-
Structural elements of the 3'-terminal coat protein binding site in alfalfa mosaic virus RNAs Nucleic
-
C. B. Reusken, J. F. Bol, Structural elements of the 3'-terminal coat protein binding site in alfalfa mosaic virus RNAs, Nucleic Acids. Res. 24 (1996) 2660-2665.
-
(1996)
Acids. Res.
, vol.24
, pp. 2660-2665
-
-
Reusken, C.B.1
Bol, J.F.2
-
30
-
-
0021014901
-
Phylogeny of protozoa deduced from 5S RRNA Sequences
-
T. Kumazaki, H. Hori, S. Osa, Phylogeny of protozoa deduced from 5S rRNA sequences, J. Mol. Evol. 19 (1983) 411-419.
-
(1983)
J. Mol. Evol.
, vol.19
, pp. 411-419
-
-
Kumazaki, T.1
Hori, H.2
Osa, S.3
-
31
-
-
0018978188
-
A newly revised classification of the protozoa
-
N. D. Levine, J. O. Corliss, F. E. Cox, G. Deroux, J. Grain, B. M. Honigberg, G. F. Leedale, A. R. Loeblich, J. Lom, D. Lynn, E. G. Merinfeld, F. C. Page, G. Poljansky, V. Sprague, J. Vavra, F. G. Wallace, A newly revised classification of the protozoa, J. Protozool 27 (1980) 37-58.
-
(1980)
J. Protozool
, vol.27
, pp. 37-58
-
-
Levine, N.D.1
Corliss, J.O.2
Cox, F.E.3
Deroux, G.4
Grain, J.5
Honigberg, B.M.6
Leedale, G.F.7
Loeblich, A.R.8
Lom, J.9
Lynn, D.10
Merinfeld, E.G.11
Page, F.C.12
Poljansky, G.13
Sprague, V.14
Vavra, J.15
Wallace, F.G.16
|