-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
DOI 10.1038/nature01511
-
R. Aebersold, M. Mann, Mass spectrometry-based proteomics, Nature 422 (2003) 198-207. (Pubitemid 36362757)
-
(2003)
Nature
, vol.422
, Issue.6928
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
27844487982
-
Mass spectrometric evidence that proteolytic processing of rainbow trout egg vitelline envelope proteins takes place on the egg
-
DOI 10.1074/jbc.M506709200
-
C.C. Darie, M.L. Biniossek, M.A. Gawinowicz, Y. Milgrom, J.O. Thumfart, L. Jovine, E.S. Litscher, P.M. Wassarman, Mass spectrometric evidence that proteolytic processing of rainbow trout egg vitelline envelope proteins takes place on the egg, J. Biol. Chem. 280 (2005) 37585-37598. (Pubitemid 41642367)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.45
, pp. 37585-37598
-
-
Darie, C.C.1
Biniossek, M.L.2
Gawinowicz, M.A.3
Milgrom, Y.4
Thumfart, J.O.5
Jovine, L.6
Litscher, E.S.7
Wassarman, P.M.8
-
3
-
-
84864440753
-
Proteomic analysis of plasma membranes isolated from undifferentiated and differentiated HepaRG cells
-
I. Sokolowska, C. Dorobantu, A.G. Woods, A. Macovei, N. Branza-Nichita, C.C. Darie, Proteomic analysis of plasma membranes isolated from undifferentiated and differentiated HepaRG cells, Proteome Sci. 10 (2012) 47.
-
(2012)
Proteome Sci.
, vol.10
, pp. 47
-
-
Sokolowska, I.1
Dorobantu, C.2
Woods, A.G.3
Macovei, A.4
Branza-Nichita, N.5
Darie, C.C.6
-
4
-
-
84865345103
-
Disulfide proteomics for identification of extracellular or secreted proteins
-
I. Sokolowska, M.A. Gawinowicz, A.G. Ngounou Wetie, C.C. Darie, Disulfide proteomics for identification of extracellular or secreted proteins, Electrophoresis 33 (2012) 2527-2536.
-
(2012)
Electrophoresis
, vol.33
, pp. 2527-2536
-
-
Sokolowska, I.1
Gawinowicz, M.A.2
Ngounou Wetie, A.G.3
Darie, C.C.4
-
5
-
-
84855854555
-
Identification of potential tumor differentiation factor (TDF) receptor from steroid-responsive and steroid-resistant breast cancer cells
-
I. Sokolowska, A.G. Woods, M.A. Gawinowicz, U. Roy, C.C. Darie, Identification of potential tumor differentiation factor (TDF) receptor from steroid-responsive and steroid-resistant breast cancer cells, J. Biol. Chem. 287 (2012) 1719-1733.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 1719-1733
-
-
Sokolowska, I.1
Woods, A.G.2
Gawinowicz, M.A.3
Roy, U.4
Darie, C.C.5
-
6
-
-
84931582769
-
Mass spectrometry for proteomics-based investigation of oxidative stress and heat shock proteins
-
I. Sokolowska, A.G. Woods, J. Wagner, J. Dorler, K. Wormwood, J. Thome, C.C. Darie, Mass spectrometry for proteomics-based investigation of oxidative stress and heat shock proteins, Oxidative Stress: Diagnostics and Therapy, 2011.
-
(2011)
Oxidative Stress: Diagnostics and Therapy
-
-
Sokolowska, I.1
Woods, A.G.2
Wagner, J.3
Dorler, J.4
Wormwood, K.5
Thome, J.6
Darie, C.C.7
-
7
-
-
84857995363
-
Identification of consistent alkylation of cysteine-less peptides ina proteomics experiment
-
A.G. Woods, I. Sokolowska, C.C. Darie, Identification of consistent alkylation of cysteine-less peptides ina proteomics experiment, Biochem. Biophys. Res. Commun. 419 (2012) 305-308.
-
(2012)
Biochem. Biophys. Res. Commun.
, vol.419
, pp. 305-308
-
-
Woods, A.G.1
Sokolowska, I.2
Darie, C.C.3
-
8
-
-
84885128051
-
Blue native page and mass spectrometry as an approach for the investigation of stable and transient protein-protein interactions
-
S. Andreescu, M. Hepel (eds.) American Chemical Society, Washington, D.C
-
A.G. Woods, I. Sokolowska, R. Yakubu, M. Butkiewicz, M. LaFleur, C. Talbot, C.C. Darie, Blue native page and mass spectrometry as an approach for the investigation of stable and transient protein-protein interactions, in: S. Andreescu, M. Hepel (Eds.), Oxidative Stress: Diagnostics, Prevention, and Therapy, American Chemical Society, Washington, D.C., 2011
-
(2011)
Oxidative Stress: Diagnostics, Prevention, and Therapy
-
-
Woods, A.G.1
Sokolowska, I.2
Yakubu, R.3
Butkiewicz, M.4
LaFleur, M.5
Talbot, C.6
Darie, C.C.7
-
9
-
-
84881172462
-
Characterization of tumor differentiation factor (TDF) and its receptor (TDF-R)
-
http://dx.doi.org/10.1007/s00018-012-1185-0 [PMID:23076253]
-
I. Sokolowska, A.G. Woods, M.A. Gawinowicz, U. Roy, C.C. Darie, Characterization of tumor differentiation factor (TDF) and its receptor (TDF-R), Cell Mol. Life Sci. (2012), http://dx.doi.org/10.1007/s00018-012-1185-0 [PMID:23076253].
-
(2012)
Cell Mol. Life Sci.
-
-
Sokolowska, I.1
Woods, A.G.2
Gawinowicz, M.A.3
Roy, U.4
Darie, C.C.5
-
10
-
-
2942588629
-
Structural characterization of fish egg vitelline envelope proteins by mass spectrometry
-
DOI 10.1021/bi0495937
-
C.C. Darie, M.L. Biniossek, L. Jovine, E.S. Litscher, P.M. Wassarman, Structural characterization of fish egg vitelline envelope proteins by mass spectrometry, Biochemistry 43 (2004) 7459-7478. (Pubitemid 38745763)
-
(2004)
Biochemistry
, vol.43
, Issue.23
, pp. 7459-7478
-
-
Darie, C.C.1
Biniossek, M.L.2
Jovine, L.3
Litscher, E.S.4
Wassarman, P.M.5
-
11
-
-
84878337916
-
-
Springer-Verlag, Düsseldorf, Germany
-
C.C. Darie, E.S. Litscher, P.M. Wassarman, Structure, Processing, and Polymerization of Rainbow Trout Egg Vitelline Envelope Proteins, Springer-Verlag, Düsseldorf, Germany, 2008.
-
(2008)
Structure, Processing, and Polymerization of Rainbow Trout Egg Vitelline Envelope Proteins
-
-
Darie, C.C.1
Litscher, E.S.2
Wassarman, P.M.3
-
12
-
-
84878326517
-
Automated mass spectrometry-based functional assay for the routine analysis of the secretome
-
A.G. Ngounou Wetie, I. Sokolowska, A.G. Woods, K.L. Wormwood, S. Dao, S. Patel, B.D. Clarkson, C.C. Darie, Automated mass spectrometry-based functional assay for the routine analysis of the secretome, J. Lab. Autom. 18 (2013) 19-29.
-
(2013)
J. Lab. Autom.
, vol.18
, pp. 19-29
-
-
Ngounou Wetie, A.G.1
Sokolowska, I.2
Woods, A.G.3
Wormwood, K.L.4
Dao, S.5
Patel, S.6
Clarkson, B.D.7
Darie, C.C.8
-
13
-
-
84873985630
-
Automatic determination of disulfide bridges in proteins
-
I. Sokolowska, A.G. Ngounou Wetie, A.G. Woods, C.C. Darie, Automatic determination of disulfide bridges in proteins, J. Lab. Autom. 17 (2012) 408-416.
-
(2012)
J. Lab. Autom.
, vol.17
, pp. 408-416
-
-
Sokolowska, I.1
Ngounou Wetie, A.G.2
Woods, A.G.3
Darie, C.C.4
-
14
-
-
38549147576
-
Purified trout egg vitelline envelope proteins VEbeta and VEgamma polymerize into homomeric fibrils from dimers in vitro
-
C.C. Darie, W.G. Janssen, E.S. Litscher, P.M. Wassarman, Purified trout egg vitelline envelope proteins VEbeta and VEgamma polymerize into homomeric fibrils from dimers in vitro, Biochim. Biophys. Acta 1784 (2008) 385-392.
-
(2008)
Biochim. Biophys. Acta
, vol.1784
, pp. 385-392
-
-
Darie, C.C.1
Janssen, W.G.2
Litscher, E.S.3
Wassarman, P.M.4
-
15
-
-
17044393647
-
Zona pellucida domain proteins
-
DOI 10.1146/annurev.biochem.74.082803.133039
-
L. Jovine, C.C. Darie, E.S. Litscher, P.M. Wassarman, Zona pellucida domain proteins, Annu. Rev. Biochem. 74 (2005) 83-114. (Pubitemid 40995502)
-
(2005)
Annual Review of Biochemistry
, vol.74
, pp. 83-114
-
-
Jovine, L.1
Darie, C.C.2
Litscher, E.S.3
Wassarman, P.M.4
-
16
-
-
36849049826
-
Purified mouse egg zona pellucida glycoproteins polymerize into homomeric fibrils under non-denaturing conditions
-
DOI 10.1002/jcp.21174
-
E.S. Litscher, W.G. Janssen, C.C. Darie, P.M. Wassarman, Purified mouse egg zona pellucida glycoproteins polymerize into homomeric fibrils under non-denaturing conditions, J. Cell. Physiol. 214 (2008) 153-157. (Pubitemid 350220069)
-
(2008)
Journal of Cellular Physiology
, vol.214
, Issue.1
, pp. 153-157
-
-
Litscher, E.S.1
Janssen, W.G.2
Darie, C.C.3
Wassarman, P.M.4
-
17
-
-
0024575860
-
Designing CD4 immunoadhesins for AIDS therapy
-
DOI 10.1038/337525a0
-
D.J. Capon, S.M. Chamow, J. Mordenti, S.A. Marsters, T. Gregory, H. Mitsuya, R.A. Byrn, C. Lucas, F.M. Wurm, J.E. Groopman, et al., Designing CD4 immunoadhesins for AIDS therapy, Nature 337 (1989) 525-531. (Pubitemid 19045536)
-
(1989)
Nature
, vol.337
, Issue.6207
, pp. 525-531
-
-
Capon, D.J.1
Chamow, S.M.2
Mordenti, J.3
Marsters, S.A.4
Gregory, T.5
Mitsuya, H.6
Byrn, R.A.7
Lucas, C.8
Wurm, F.M.9
Groopman, J.E.10
Broder, S.11
Smith, D.H.12
-
18
-
-
33644906437
-
Polypeptide encoded by mouse ZP3 exon-7 is necessary and sufficient for binding of mouse sperm in vitro
-
Z. Williams, E.S. Litscher, L. Jovine, P.M. Wassarman, Polypeptide encoded by mouse ZP3 exon-7 is necessary and sufficient for binding of mouse sperm in vitro, J. Cell. Physiol. 207 (2006) 30-39.
-
(2006)
J. Cell. Physiol.
, vol.207
, pp. 30-39
-
-
Williams, Z.1
Litscher, E.S.2
Jovine, L.3
Wassarman, P.M.4
-
19
-
-
84872818942
-
Structural investigation of tumor differentiation factor (TDF)
-
U. Roy, I. Sokolowska, A.G. Woods, C.C. Darie, Structural investigation of tumor differentiation factor (TDF), Biotechnol. Appl. Biochem. 59 (2012) 445-450.
-
(2012)
Biotechnol. Appl. Biochem.
, vol.59
, pp. 445-450
-
-
Roy, U.1
Sokolowska, I.2
Woods, A.G.3
Darie, C.C.4
-
20
-
-
0029791705
-
A strategy for identifying gel-separated proteins in sequence databases by MS alone
-
A. Shevchenko, M. Wilm, O. Vorm, O.N. Jensen, A.V. Podtelejnikov, G. Neubauer, P. Mortensen, M. Mann, A strategy for identifying gel-separated proteins in sequence databases by MS alone, Biochem. Soc. Trans. 24 (1996) 893-896. (Pubitemid 26306321)
-
(1996)
Biochemical Society Transactions
, vol.24
, Issue.3
, pp. 893-896
-
-
Shevchenko, An.1
Wilm, M.2
Vorm, O.3
Jensen, O.N.4
Podtelejnikov, A.V.5
Neubauer, G.6
Shevchenko, Al.7
Mortensen, P.8
Mann, M.9
-
21
-
-
45749144385
-
Stable isotopic labeling by amino acids in cultured primary neurons: Application to brain-derived neurotrophic factor-dependent phosphotyrosine- associated signaling
-
DOI 10.1074/mcp.M700387-MCP200
-
D.S. Spellman, K. Deinhardt, C.C. Darie, M.V. Chao, T.A. Neubert, Stable isotopic labeling by amino acids in cultured primary neurons: application to brain-derived neurotrophic factor-dependent phosphotyrosine-associated signaling, Mol. Cell Proteomics 7 (2008) 1067-1076. (Pubitemid 351943954)
-
(2008)
Molecular and Cellular Proteomics
, vol.7
, Issue.6
, pp. 1067-1076
-
-
Spellman, D.S.1
Deinhardt, K.2
Darie, C.C.3
Chao, M.V.4
Neuebrt, T.A.5
-
22
-
-
84872757179
-
-
Springer-Verlag, Düsseldorf, Germany
-
C.C. Darie, V. Shetty, D.S. Spellman, G. Zhang, C. Xu, H.L. Cardasis, S. Blais, D. Fenyo, T.A. Neubert, Blue Native PAGE and Mass Spectrometry Analysis of the Ephrin Stimulation-Dependent Protein-Protein Interactions in NG108-EphB2 Cells, Springer-Verlag, Düsseldorf, Germany, 2008.
-
(2008)
Blue Native PAGE and Mass Spectrometry Analysis of the Ephrin Stimulation-Dependent Protein-Protein Interactions in NG108-EphB2 Cells
-
-
Darie, C.C.1
Shetty, V.2
Spellman, D.S.3
Zhang, G.4
Xu, C.5
Cardasis, H.L.6
Blais, S.7
Fenyo, D.8
Neubert, T.A.9
-
23
-
-
81855192712
-
Identifying transient protein-protein interactions in EphB2 signaling by blue native PAGE and mass spectrometry
-
C.C. Darie, K. Deinhardt, G. Zhang, H.S. Cardasis, M.V. Chao, T.A. Neubert, Identifying transient protein-protein interactions in EphB2 signaling by blue native PAGE and mass spectrometry, Proteomics 11 (2011) 4514-4528.
-
(2011)
Proteomics
, vol.11
, pp. 4514-4528
-
-
Darie, C.C.1
Deinhardt, K.2
Zhang, G.3
Cardasis, H.S.4
Chao, M.V.5
Neubert, T.A.6
-
24
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
A. Roy, A. Kucukural, Y. Zhang, I-TASSER: a unified platform for automated protein structure and function prediction, Nat. Protoc. 5 (2010) 725-738.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
25
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Y. Zhang, I-TASSER server for protein 3D structure prediction, BMC Bioinforma. 9 (2008) 40.
-
(2008)
BMC Bioinforma.
, vol.9
, pp. 40
-
-
Zhang, Y.1
-
26
-
-
84862225232
-
Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field
-
http://dx.doi.org/10.1002/prot.24065
-
D. Xu, Y. Zhang, Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field, Proteins 80 (7) (2012) 1715-1735, http://dx.doi.org/10.1002/prot.24065.
-
(2012)
Proteins
, vol.80
, Issue.7
, pp. 1715-1735
-
-
Xu, D.1
Zhang, Y.2
-
27
-
-
84885092496
-
-
N. Author
-
N. Author, http://zhanglab.ccmb.med.umich.edu/QUARK.
-
-
-
-
28
-
-
84869175510
-
-
Accelrys-Software-Inc Release 3.1, 1, Accelrys Software Inc., San Diego
-
Accelrys-Software-Inc, Discovery Studio Modeling Environment, Release 3.1, 1, Accelrys Software Inc., San Diego, 2012., (1-1).
-
(2012)
Discovery Studio Modeling Environment
, pp. 1-1
-
-
|