-
1
-
-
78649523088
-
SNP selection in genome-wide and candidate gene studies via penalized logistic regression
-
Ayers KL, Cordell HJ. 2010. SNP selection in genome-wide and candidate gene studies via penalized logistic regression. Genet Epidemiol 34: 879-891.
-
(2010)
Genet Epidemiol
, vol.34
, pp. 879-891
-
-
Ayers, K.L.1
Cordell, H.J.2
-
2
-
-
77958102016
-
Statistical analysis strategies for association studies involving rare variants
-
Bansal V, Libiger O, Torkamani A, Schork NJ. 2010. Statistical analysis strategies for association studies involving rare variants. Nat Rev Genet 11: 773-785.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 773-785
-
-
Bansal, V.1
Libiger, O.2
Torkamani, A.3
Schork, N.J.4
-
3
-
-
39849102639
-
Simultaneous regression shrinkage, variable selection, and supervised clustering of predictors with oscar
-
Bondell HD, Reich BJ. 2008. Simultaneous regression shrinkage, variable selection, and supervised clustering of predictors with oscar. Biometrics 64: 115-123.
-
(2008)
Biometrics
, vol.64
, pp. 115-123
-
-
Bondell, H.D.1
Reich, B.J.2
-
4
-
-
84865065156
-
Joint association testing of common and rare genetic variants using heirarchical modeling
-
Cardin NJ, Mefford JA, Witte JS. 2012. Joint association testing of common and rare genetic variants using heirarchical modeling. Genet Epidemiol 36: 642-651.
-
(2012)
Genet Epidemiol
, vol.36
, pp. 642-651
-
-
Cardin, N.J.1
Mefford, J.A.2
Witte, J.S.3
-
5
-
-
84860332801
-
Link functions in multi-locus genetic models: implications for testing, prediction, and interpretation
-
Clayton D. 2012. Link functions in multi-locus genetic models: implications for testing, prediction, and interpretation. Genet Epidemiol 36: 409-418.
-
(2012)
Genet Epidemiol
, vol.36
, pp. 409-418
-
-
Clayton, D.1
-
7
-
-
77953694851
-
A note on the group lasso and sparse group lasso
-
Technical report, Department of Statistics, Stanford University
-
Friedman J, Hastie T, Tibshirani R. 2010a. A note on the group lasso and sparse group lasso. Technical report, Department of Statistics, Stanford University.
-
(2010)
-
-
Friedman, J.1
Hastie, T.2
Tibshirani, R.3
-
8
-
-
77950537175
-
Regularization paths for generalized linear models via coordinate descent
-
Friedman J, Hastie T, Tibshirani R. 2010b. Regularization paths for generalized linear models via coordinate descent. J Statist Software 33: 1-22.
-
(2010)
J Statist Software
, vol.33
, pp. 1-22
-
-
Friedman, J.1
Hastie, T.2
Tibshirani, R.3
-
9
-
-
8744251722
-
Sparse logistic regression for text categorization
-
DIMACS Working Group on Monitoring Message Streams Project Report, April 2005
-
Genkin A, Lewis DD, Madigan D. 2005. Sparse logistic regression for text categorization. DIMACS Working Group on Monitoring Message Streams Project Report, April 2005.
-
(2005)
-
-
Genkin, A.1
Lewis, D.D.2
Madigan, D.3
-
10
-
-
77951028197
-
A data-adaptive sum test for disease association with multiple common or rare variants
-
Han F, Pan W. 2009. A data-adaptive sum test for disease association with multiple common or rare variants. Hum Hered 70: 42-54.
-
(2009)
Hum Hered
, vol.70
, pp. 42-54
-
-
Han, F.1
Pan, W.2
-
11
-
-
84942484786
-
Ridge regression: biased estimation for nonorthogonal problems
-
Hoerl AE, Kennard RW. 1970. Ridge regression: biased estimation for nonorthogonal problems. Technometrics 12: 55-67.
-
(1970)
Technometrics
, vol.12
, pp. 55-67
-
-
Hoerl, A.E.1
Kennard, R.W.2
-
12
-
-
37249031330
-
Sequence-level population simulations over large genomic regions
-
Hoggart CJ, Chadeau-Hyam M, Clark TG, Lampariello R, Whittaker JC, Iorio MD, Balding DJ. 2007. Sequence-level population simulations over large genomic regions. Genetics 177: 1725-1731.
-
(2007)
Genetics
, vol.177
, pp. 1725-1731
-
-
Hoggart, C.J.1
Chadeau-Hyam, M.2
Clark, T.G.3
Lampariello, R.4
Whittaker, J.C.5
Iorio, M.D.6
Balding, D.J.7
-
13
-
-
48249096806
-
Simultaneous analysis of all SNPs in genome-wide and re-sequencing studies
-
Hoggart CJ, Whittaker JC, Iorio MD, Balding DJ. 2008. Simultaneous analysis of all SNPs in genome-wide and re-sequencing studies. PLoS Genet 4(7):e1000130.
-
(2008)
PLoS Genet
, vol.4
, Issue.7
-
-
Hoggart, C.J.1
Whittaker, J.C.2
Iorio, M.D.3
Balding, D.J.4
-
15
-
-
84864942403
-
Optimal unified approach for rare-variant association testing with application to small-sample case-control whole-exome sequencing studies
-
NHLBI GO Exome Sequencing Project-ESP Lung Project Team
-
Lee S, Emond MJ, Bamshad MJ, Barnes KC, Rieder MJ, Mickerson DA, NHLBI GO Exome Sequencing Project-ESP Lung Project Team, Christiani DC, Wurfel MM, Lin X. 2012. Optimal unified approach for rare-variant association testing with application to small-sample case-control whole-exome sequencing studies. Am J Hum Genet 91: 224-237.
-
(2012)
Am J Hum Genet
, vol.91
, pp. 224-237
-
-
Lee, S.1
Emond, M.J.2
Bamshad, M.J.3
Barnes, K.C.4
Rieder, M.J.5
Mickerson, D.A.6
Christiani, D.C.7
Wurfel, M.M.8
Lin, X.9
-
16
-
-
50949095168
-
Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data
-
Li B, Leal SM. 2008. Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. Am J Hum Genet 83: 311-321.
-
(2008)
Am J Hum Genet
, vol.83
, pp. 311-321
-
-
Li, B.1
Leal, S.M.2
-
17
-
-
79951530319
-
The Bayesian lasso for genome-wide association studies
-
Li J, Das K, Fu G, Li R, Wu R. 2010. The Bayesian lasso for genome-wide association studies. Bioinformatics 27: 516-523.
-
(2010)
Bioinformatics
, vol.27
, pp. 516-523
-
-
Li, J.1
Das, K.2
Fu, G.3
Li, R.4
Wu, R.5
-
18
-
-
80052731371
-
A general framework for detecting disease associations with rare variants in sequencing studies
-
Lin DY, Tang ZZ. 2011. A general framework for detecting disease associations with rare variants in sequencing studies. Am J Hum Genet 89: 354-367.
-
(2011)
Am J Hum Genet
, vol.89
, pp. 354-367
-
-
Lin, D.Y.1
Tang, Z.Z.2
-
19
-
-
61449168010
-
A groupwise association test for rare mutations using a weighted sum statistic
-
Madsen BE, Browning SR. 2009. A groupwise association test for rare mutations using a weighted sum statistic. PLoS Genet 5(2):e1000384.
-
(2009)
PLoS Genet
, vol.5
, Issue.2
-
-
Madsen, B.E.1
Browning, S.R.2
-
20
-
-
40749150099
-
Accommodating linkage disequilibrium in genetic-association analyses via ridge regression
-
Malo N, Libiger O, Schork NJ. 2008. Accommodating linkage disequilibrium in genetic-association analyses via ridge regression. Am J Hum Genet 82: 375-385.
-
(2008)
Am J Hum Genet
, vol.82
, pp. 375-385
-
-
Malo, N.1
Libiger, O.2
Schork, N.J.3
-
21
-
-
58149347486
-
Genome-wide association studies: potential next steps on a genetic journey
-
McCarthy MI, Hirschhorn JN. 2008. Genome-wide association studies: potential next steps on a genetic journey. Hum Mol Genet 17: R156-R165.
-
(2008)
Hum Mol Genet
, vol.17
-
-
McCarthy, M.I.1
Hirschhorn, J.N.2
-
23
-
-
33846014328
-
A strategy to discover genes that carry multi-allelic or mono-allelic risk for common diseases: a cohort allelic sums test (cast)
-
Morgenthaler S, Thilly WG. 2007. A strategy to discover genes that carry multi-allelic or mono-allelic risk for common diseases: a cohort allelic sums test (cast). Mutat Res 615: 28-56.
-
(2007)
Mutat Res
, vol.615
, pp. 28-56
-
-
Morgenthaler, S.1
Thilly, W.G.2
-
24
-
-
76649136928
-
An evaluation of statistical approaches to rare variant analysis in genetic association studies
-
Morris AP, Zeggini E. 2009. An evaluation of statistical approaches to rare variant analysis in genetic association studies. Genet Epidemiol 34: 188-193.
-
(2009)
Genet Epidemiol
, vol.34
, pp. 188-193
-
-
Morris, A.P.1
Zeggini, E.2
-
25
-
-
78951473497
-
Extended Bayesian LASSO for multiple quantitative trait loci mapping and unobserved phenotype prediction
-
Mutshinda CM, Sillanpää MJ. 2010. Extended Bayesian LASSO for multiple quantitative trait loci mapping and unobserved phenotype prediction. Genetics 186: 1067-1075.
-
(2010)
Genetics
, vol.186
, pp. 1067-1075
-
-
Mutshinda, C.M.1
Sillanpää, M.J.2
-
26
-
-
80054800111
-
Bayesian shinkage analysis of qtls under shape-adaptive shrinkage priors, and accurate re-estimation of genetic effects
-
Mutshinda CM, Sillanpää MJ. 2011. Bayesian shinkage analysis of qtls under shape-adaptive shrinkage priors, and accurate re-estimation of genetic effects. Heredity 107: 405-412.
-
(2011)
Heredity
, vol.107
, pp. 405-412
-
-
Mutshinda, C.M.1
Sillanpää, M.J.2
-
27
-
-
79953752624
-
Testing for an unusual distribution of rare variants
-
Neale BM, Rivas MA, Voight BF, Altshuler D, Devlin B, Orho-Melander M, Kathiresan S, Purcell SM, Roeder K, Daly MJ. 2011. Testing for an unusual distribution of rare variants. PLoS Genet 7: e1001322.
-
(2011)
PLoS Genet
, vol.7
-
-
Neale, B.M.1
Rivas, M.A.2
Voight, B.F.3
Altshuler, D.4
Devlin, B.5
Orho-Melander, M.6
Kathiresan, S.7
Purcell, S.M.8
Roeder, K.9
Daly, M.J.10
-
28
-
-
84864413139
-
Including known covariates can reduce power to detect genetic effects in case-control studies
-
Pirinen M, Donnelly P, Spencer CC. 2012. Including known covariates can reduce power to detect genetic effects in case-control studies. Nat Genet 44: 848-851.
-
(2012)
Nat Genet
, vol.44
, pp. 848-851
-
-
Pirinen, M.1
Donnelly, P.2
Spencer, C.C.3
-
29
-
-
77953121877
-
Pooled association tests for rare variants in exon-resequencing studies
-
Price AL, Kryukov GV, de Bakker PI, Purcell SM, Staples J, Wei LJ, Sunyaev SR. 2010. Pooled association tests for rare variants in exon-resequencing studies. Am J Hum Genet 86: 832-838.
-
(2010)
Am J Hum Genet
, vol.86
, pp. 832-838
-
-
Price, A.L.1
Kryukov, G.V.2
de Bakker, P.I.3
Purcell, S.M.4
Staples, J.5
Wei, L.J.6
Sunyaev, S.R.7
-
30
-
-
34548292504
-
PLINK: a tool set for whole-genome association and population-based linkage analyses
-
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira M, Bender D, Maller J, Sklar P, de Bakker P, Daly M, Sham P. 2007. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81: 559-575.
-
(2007)
Am J Hum Genet
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.5
Bender, D.6
Maller, J.7
Sklar, P.8
de Bakker, P.9
Daly, M.10
Sham, P.11
-
31
-
-
84865157725
-
Detecting association of rare and common variants by testing an optimally weighted combination of variants
-
Sha Q, Wang X, Wang X, Zhang S. 2012. Detecting association of rare and common variants by testing an optimally weighted combination of variants. Genet Epidemiol 36: 567-571.
-
(2012)
Genet Epidemiol
, vol.36
, pp. 567-571
-
-
Sha, Q.1
Wang, X.2
Wang, X.3
Zhang, S.4
-
32
-
-
84864868742
-
Fast identification of biological pathways associated with a quantitative trait using group lasso with overlaps
-
Alzheimer's Disease Neuroimaging Initiative
-
Silver M, Montana G, Alzheimer's Disease Neuroimaging Initiative. 2012. Fast identification of biological pathways associated with a quantitative trait using group lasso with overlaps. Stat Appl Genet Mol Biol 11: 1-43.
-
(2012)
Stat Appl Genet Mol Biol
, vol.11
, pp. 1-43
-
-
Silver, M.1
Montana, G.2
-
33
-
-
77956644615
-
Genome-wide mulitple loci mapping in experimental crosses by the iterative adaptive penalized regression
-
Sun W, Ibrahim JG, Zou F. 2010. Genome-wide mulitple loci mapping in experimental crosses by the iterative adaptive penalized regression. Genetics 185: 349-359.
-
(2010)
Genetics
, vol.185
, pp. 349-359
-
-
Sun, W.1
Ibrahim, J.G.2
Zou, F.3
-
34
-
-
85194972808
-
Regression shrinkage via the lasso
-
Tibshirani R. 1996. Regression shrinkage via the lasso. J R Statis Soc 58: 267-88.
-
(1996)
J R Statis Soc
, vol.58
, pp. 267-288
-
-
Tibshirani, R.1
-
35
-
-
80051499915
-
Rare-variant association testing for sequencing data with the sequence kernel association test
-
Wu MC, Lee S, Cai T, Li Y, Boehnke M, Lin X. 2011. Rare-variant association testing for sequencing data with the sequence kernel association test. Am J Hum Genet 89: 82-93.
-
(2011)
Am J Hum Genet
, vol.89
, pp. 82-93
-
-
Wu, M.C.1
Lee, S.2
Cai, T.3
Li, Y.4
Boehnke, M.5
Lin, X.6
-
36
-
-
62549115747
-
Genome-wide association analysis by lasso penalized logistic regression
-
Wu TT, Chen YF, Hastie T, Sobel E, Lange K. 2009. Genome-wide association analysis by lasso penalized logistic regression. Bioinformatics 25: 714-21.
-
(2009)
Bioinformatics
, vol.25
, pp. 714-721
-
-
Wu, T.T.1
Chen, Y.F.2
Hastie, T.3
Sobel, E.4
Lange, K.5
-
37
-
-
84863879353
-
Coordinate descent algorithms for lasso penalized regression
-
Wu TT, Lange K. 2008. Coordinate descent algorithms for lasso penalized regression. Ann Appl Statist 2: 224-44.
-
(2008)
Ann Appl Statist
, vol.2
, pp. 224-244
-
-
Wu, T.T.1
Lange, K.2
-
38
-
-
77958485202
-
An expectation maximization algorithm for the Lasso estimation of quantitative trait locus effects
-
Xu S. 2010. An expectation maximization algorithm for the Lasso estimation of quantitative trait locus effects. Heredity 105: 483-494.
-
(2010)
Heredity
, vol.105
, pp. 483-494
-
-
Xu, S.1
-
39
-
-
84855295482
-
Hierarchical generalized linear models for multiple groups of rare and common variants: jointly estimating group and individual-variant effects
-
Yi N, Liu N, Zhi D, Li J. 2011. Hierarchical generalized linear models for multiple groups of rare and common variants: jointly estimating group and individual-variant effects. PLoS Genet 7(12):e1002382.
-
(2011)
PLoS Genet
, vol.7
, Issue.12
-
-
Yi, N.1
Liu, N.2
Zhi, D.3
Li, J.4
-
40
-
-
49849103360
-
Bayesian LASSO for quantitative trait loci mapping
-
Yi N, Xu S. 2008. Bayesian LASSO for quantitative trait loci mapping. Genetics 179: 1045-1055.
-
(2008)
Genetics
, vol.179
, pp. 1045-1055
-
-
Yi, N.1
Xu, S.2
-
41
-
-
78650363812
-
Bayesian analysis of rare variants in genetic association studies
-
Yi N, Zhi D. 2011. Bayesian analysis of rare variants in genetic association studies. Genet Epidemiol 35: 57-69.
-
(2011)
Genet Epidemiol
, vol.35
, pp. 57-69
-
-
Yi, N.1
Zhi, D.2
-
42
-
-
33645035051
-
Model selection and estimation in regression with grouped variables
-
Yuan M, Lin Y. 2006. Model selection and estimation in regression with grouped variables. J R Statis Soc Ser B 68: 49-67.
-
(2006)
J R Statis Soc Ser B
, vol.68
, pp. 49-67
-
-
Yuan, M.1
Lin, Y.2
-
43
-
-
80052833647
-
Penalized regression for genome-wide association screening of sequence data
-
Zhou H, Alexander DH, Sehl ME, Sinsheimer JS, Sobel EM, Lange K. 2011. Penalized regression for genome-wide association screening of sequence data. Pac Symp Biocomput 2011: 106-117.
-
(2011)
Pac Symp Biocomput
, vol.2011
, pp. 106-117
-
-
Zhou, H.1
Alexander, D.H.2
Sehl, M.E.3
Sinsheimer, J.S.4
Sobel, E.M.5
Lange, K.6
-
44
-
-
77957233032
-
Association screening of common and rare genetic variants by penalized regression
-
Zhou H, Sehl ME, Sinsheimer JS, Lange K. 2010. Association screening of common and rare genetic variants by penalized regression. Bioinformatics 26(19):2375-2382.
-
(2010)
Bioinformatics
, vol.26
, Issue.19
, pp. 2375-2382
-
-
Zhou, H.1
Sehl, M.E.2
Sinsheimer, J.S.3
Lange, K.4
-
45
-
-
16244401458
-
Regularization and variable selection via the elastic net
-
Zou H, Hastie T. 2005. Regularization and variable selection via the elastic net. J R Statis Soc Ser B 67: 301-320.
-
(2005)
J R Statis Soc Ser B
, vol.67
, pp. 301-320
-
-
Zou, H.1
Hastie, T.2
|