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Volumn 370, Issue 1-2, 2013, Pages 35-45

Quantifying the effect of soil moisture content on segmenting root system architecture in X-ray computed tomography images

Author keywords

Plant root; Rhizosphere; Root architecture; Segmentation; Soil moisture; X ray micro computed tomography (CT)

Indexed keywords

CLAY LOAM; LOAMY SAND; PORE SPACE; RICE; ROOT ARCHITECTURE; SOIL MOISTURE; SOIL ORGANIC MATTER; SOIL PROFILE; SOIL-VEGETATION INTERACTION; TOMOGRAPHY; VISUALIZATION;

EID: 84881612680     PISSN: 0032079X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11104-013-1596-1     Document Type: Article
Times cited : (51)

References (24)
  • 2
    • 79958074246 scopus 로고    scopus 로고
    • Three-Dimensional root phenotyping with a novel imaging and software platform
    • doi:10.1104/pp.110.169102
    • Clark R, MacCurdy R, Jung J, Shaff J, McCouch S, Aneshansley D, Kochian L (2011) Three-Dimensional root phenotyping with a novel imaging and software platform. Plant Physiol 156: 455-465. doi: 10. 1104/pp. 110. 169102.
    • (2011) Plant Physiol , vol.156 , pp. 455-465
    • Clark, R.1    MacCurdy, R.2    Jung, J.3    Shaff, J.4    McCouch, S.5    Aneshansley, D.6    Kochian, L.7
  • 3
    • 77955276941 scopus 로고    scopus 로고
    • Plant structure visualization by high resolution X-ray computed tomography
    • doi:10.1016/j.tplants.2010.05.002
    • Dhondt S, Vanhaeren H, van Loo D, Cnudde V, Inzé D (2010) Plant structure visualization by high resolution X-ray computed tomography. Trends Plant Sci 15: 419-422. doi: 10. 1016/j. tplants. 2010. 05. 002.
    • (2010) Trends Plant Sci , vol.15 , pp. 419-422
    • Dhondt, S.1    Vanhaeren, H.2    van Loo, D.3    Cnudde, V.4    Inzé, D.5
  • 4
    • 77249131395 scopus 로고    scopus 로고
    • Comparative transcriptome analysis coupled to X-ray CT reveals sucrose supply and growth velocity as major determinants of potato tuber starch biosynthesis
    • doi:10.1186%2F1471-2164-11-93
    • Ferreira S, Senning M, Sonnewald S, KeBling P, Goldstein R, Sonnewald U (2010) Comparative transcriptome analysis coupled to X-ray CT reveals sucrose supply and growth velocity as major determinants of potato tuber starch biosynthesis. Genomics 11: 93. doi: 10. 1186%2F1471-2164-11-93.
    • (2010) Genomics , vol.11 , pp. 93
    • Ferreira, S.1    Senning, M.2    Sonnewald, S.3    KeBling, P.4    Goldstein, R.5    Sonnewald, U.6
  • 5
    • 84861052762 scopus 로고    scopus 로고
    • Non-destructive quantification of cereal roots in soil using high-resolution X-ray tomography
    • doi: 10. 1093/jxb/err421
    • Flavel R, Guppy C, Tighe M, Watt M, McNeil A, Young I (2012) Non-destructive quantification of cereal roots in soil using high-resolution X-ray tomography. J Exp Bot. doi: 10. 1093/jxb/err421.
    • (2012) J Exp Bot
    • Flavel, R.1    Guppy, C.2    Tighe, M.3    Watt, M.4    McNeil, A.5    Young, I.6
  • 7
    • 33846215452 scopus 로고    scopus 로고
    • Computed tomographic evaluation of osmotica on shrinkage and recovery of lupin (Lupinus angustifolius L.) and radish (Raphanus sativus L.) roots
    • doi:10.1016%2Fj.envexpbot.2006.04.004
    • Hamza MA, Anderson SH, Aylmore LAG (2007) Computed tomographic evaluation of osmotica on shrinkage and recovery of lupin (Lupinus angustifolius L.) and radish (Raphanus sativus L.) roots. Environ Exp Bot 59: 334-339. doi: 10. 1016%2Fj. envexpbot. 2006. 04. 004.
    • (2007) Environ Exp Bot , vol.59 , pp. 334-339
    • Hamza, M.A.1    Anderson, S.H.2    Aylmore, L.A.G.3
  • 8
    • 0030613454 scopus 로고    scopus 로고
    • Three dimensional imaging of plant roots in situ with X-ray computed tomography
    • doi:10.1023%2FB%3APLSO.0000009694.64377.6f
    • Heeraman DA, Hopmans JW, Clausnitzer V (1997) Three dimensional imaging of plant roots in situ with X-ray computed tomography. Plant Soil 189: 167-179. doi: 10. 1023%2FB%3APLSO. 0000009694. 64377. 6f.
    • (1997) Plant Soil , vol.189 , pp. 167-179
    • Heeraman, D.A.1    Hopmans, J.W.2    Clausnitzer, V.3
  • 9
    • 4043124903 scopus 로고    scopus 로고
    • Estimating length, average diameter and surface area of roots using two different image analyses systems
    • doi:10.1023%2FB%3APLSO.0000030171.28821.55
    • Himmelbauer ML, Loiskandl W, Kastanek F (2004) Estimating length, average diameter and surface area of roots using two different image analyses systems. Plant Soil 260: 111-120. doi: 10. 1023%2FB%3APLSO. 0000030171. 28821. 55.
    • (2004) Plant Soil , vol.260 , pp. 111-120
    • Himmelbauer, M.L.1    Loiskandl, W.2    Kastanek, F.3
  • 10
    • 84856571108 scopus 로고    scopus 로고
    • RooTrak: Automated recovery of 3D plant root architecture in soil from X-ray micro computed tomography using visual tracking
    • doi: 10. 1104/pp. 111. 186221
    • Mairhofer S, Zappala S, Tracy S, Mooney SJ, Pridmore P (2012) RooTrak: automated recovery of 3D plant root architecture in soil from X-ray micro computed tomography using visual tracking. Plant Physiol. doi: 10. 1104/pp. 111. 186221.
    • (2012) Plant Physiol
    • Mairhofer, S.1    Zappala, S.2    Tracy, S.3    Mooney, S.J.4    Pridmore, P.5
  • 11
    • 0141795715 scopus 로고    scopus 로고
    • Applications of X-ray computed tomography in the geosciences
    • doi:10.1144%2FGSL.SP.2003.215.01.01
    • Mees F, Swennen R, van Geet M, Jacobs P (2003) Applications of X-ray computed tomography in the geosciences. Geol Soc Lond Spec Publ 215: 1-6. doi: 10. 1144%2FGSL. SP. 2003. 215. 01. 01.
    • (2003) Geol Soc Lond Spec Publ , vol.215 , pp. 1-6
    • Mees, F.1    Swennen, R.2    van Geet, M.3    Jacobs, P.4
  • 12
    • 84858004392 scopus 로고    scopus 로고
    • Developing X-ray computed tomography to non-invasively image 3-D root systems architecture in soil
    • doi: 10. 1007/s11104-011-1039-9
    • Mooney SJ, Pridmore TP, Helliwell J, Bennett MJ (2012) Developing X-ray computed tomography to non-invasively image 3-D root systems architecture in soil. Plant Soil. doi: 10. 1007/s11104-011-1039-9.
    • (2012) Plant Soil
    • Mooney, S.J.1    Pridmore, T.P.2    Helliwell, J.3    Bennett, M.J.4
  • 13
    • 0033810509 scopus 로고    scopus 로고
    • X-ray absorption and phase contrast imaging to study the interplay between plant roots and soil structure
    • doi:10.1023/A:1004835813094
    • Moran CJ, Pierret A, Stevenson AW (2000) X-ray absorption and phase contrast imaging to study the interplay between plant roots and soil structure. Plant Soil 223: 101-117. doi: 10. 1023/A: 1004835813094.
    • (2000) Plant Soil , vol.223 , pp. 101-117
    • Moran, C.J.1    Pierret, A.2    Stevenson, A.W.3
  • 14
    • 61449254517 scopus 로고    scopus 로고
    • Prospect of non-destructive analysis of root growth and geometry using computerised tomography (CT X-Ray)
    • Editor Michel, J. C. Acta Hort
    • Palsdottir AM, Alsanius BM, Johannesson V, Ask A (2008) Prospect of non-destructive analysis of root growth and geometry using computerised tomography (CT X-Ray). Proc. IS on Growing Media. Editor Michel, J. C. Acta Hort 779: 155-159.
    • (2008) Proc. is On Growing Media , vol.779 , pp. 155-159
    • Palsdottir, A.M.1    Alsanius, B.M.2    Johannesson, V.3    Ask, A.4
  • 15
    • 33751550463 scopus 로고    scopus 로고
    • Non-destructive visualisation and quantification of roots using computed tomography
    • doi:10.1016/j.soilbio.2006.07.018
    • Perret JS, Al-Belushi ME, Deadman M (2007) Non-destructive visualisation and quantification of roots using computed tomography. Soil Biol Biochem 39: 391-399. doi: 10. 1016/j. soilbio. 2006. 07. 018.
    • (2007) Soil Biol Biochem , vol.39 , pp. 391-399
    • Perret, J.S.1    Al-Belushi, M.E.2    Deadman, M.3
  • 16
    • 77957303453 scopus 로고    scopus 로고
    • Twenty-five years of computed tomography in soil physics: a literature review of the Brazilian contribution
    • doi:10.1016/j.still.2010.07.013
    • Pires L, Borges J, Bacchy O, Reichardt K (2010) Twenty-five years of computed tomography in soil physics: a literature review of the Brazilian contribution. Soil Tillage Res 110: 197-210. doi: 10. 1016/j. still. 2010. 07. 013.
    • (2010) Soil Tillage Res , vol.110 , pp. 197-210
    • Pires, L.1    Borges, J.2    Bacchy, O.3    Reichardt, K.4
  • 17
    • 33748776025 scopus 로고    scopus 로고
    • The mysterious root length
    • Ryser P (2006) The mysterious root length. Plant Soil 286: 1-6.
    • (2006) Plant Soil , vol.286 , pp. 1-6
    • Ryser, P.1
  • 18
    • 77952238726 scopus 로고    scopus 로고
    • Development of plant roots network in polluted soils: an X-Ray computed tomography investigation
    • doi:10.1007/s11270-009-0192-8
    • Seignez N, Gauthier A, Mess F, Brunel C, Dubios M, Potdevin JL (2010) Development of plant roots network in polluted soils: an X-Ray computed tomography investigation. Water Air Soil Pollut 209: 199-207. doi: 10. 1007/s11270-009-0192-8.
    • (2010) Water Air Soil Pollut , vol.209 , pp. 199-207
    • Seignez, N.1    Gauthier, A.2    Mess, F.3    Brunel, C.4    Dubios, M.5    Potdevin, J.L.6
  • 19
    • 74249094242 scopus 로고    scopus 로고
    • The X-factor: visualizing undisturbed root architecture in soils using X-ray computed tomography
    • doi:10.1093/jxb/erp386
    • Tracy SR, Roberts J, Black CR, McNeill A, Davidson R, Mooney SJ (2010) The X-factor: visualizing undisturbed root architecture in soils using X-ray computed tomography. J Exp Bot 61: 311-313. doi: 10. 1093/jxb/erp386.
    • (2010) J Exp Bot , vol.61 , pp. 311-313
    • Tracy, S.R.1    Roberts, J.2    Black, C.R.3    McNeill, A.4    Davidson, R.5    Mooney, S.J.6
  • 20
    • 84858338496 scopus 로고    scopus 로고
    • Quantifying the effect of soil compaction on three varieties of wheat (triticum aestivum l.) with differing root architecture using x-ray micro computed tomography (CT)
    • doi: 10. 1007/s11104-011-1022-5
    • Tracy SR, Black CR, Roberts JR, McNeill A, Davidson R, Tester M, Samec M, Korosak D, Sturrock C, Mooney SJ (2012a) Quantifying the effect of soil compaction on three varieties of wheat (Triticum aestivum L.) with differing root architecture using X-ray micro computed tomography (CT). Plant Soil. doi: 10. 1007/s11104-011-1022-5.
    • (2012) Plant Soil
    • Tracy, S.R.1    Black, C.R.2    Roberts, J.R.3    McNeill, A.4    Davidson, R.5    Tester, M.6    Samec, M.7    Korosak, D.8    Sturrock, C.9    Mooney, S.J.10
  • 21
    • 84871859601 scopus 로고    scopus 로고
    • Quantifying the impact of soil compaction on root system architecture in tomato (Solanum lycopersicum) by X-ray micro-computed tomography
    • doi: 10. 1093/aob/MCS031
    • Tracy SR, Black CR, Roberts JA, Sturrock C, Mairhofer S, Craigon J, Mooney SJ (2012b) Quantifying the impact of soil compaction on root system architecture in tomato (Solanum lycopersicum) by X-ray micro-computed tomography. Ann Bot London. doi: 10. 1093/aob/MCS031.
    • (2012) Ann Bot London
    • Tracy, S.R.1    Black, C.R.2    Roberts, J.A.3    Sturrock, C.4    Mairhofer, S.5    Craigon, J.6    Mooney, S.J.7
  • 22
    • 75549090731 scopus 로고    scopus 로고
    • Issues in using the WinRHIZO system to determine physical characteristics of plant fine roots
    • doi:10.1007/s11104-008-9577-5
    • Wang M, Zhang Q (2009) Issues in using the WinRHIZO system to determine physical characteristics of plant fine roots. Acta Ecol Sin 29: 136-138. doi: 10. 1007/s11104-008-9577-5.
    • (2009) Acta Ecol Sin , vol.29 , pp. 136-138
    • Wang, M.1    Zhang, Q.2
  • 24
    • 38149119545 scopus 로고    scopus 로고
    • Hardware and software efficacy in assessment of fine root diameter distributions
    • doi:10.1016/j.compag.2007.08.002
    • Zobel R (2008) Hardware and software efficacy in assessment of fine root diameter distributions. Comput Electron Agric 60: 178-189. doi: 10. 1016/j. compag. 2007. 08. 002.
    • (2008) Comput Electron Agric , vol.60 , pp. 178-189
    • Zobel, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.