메뉴 건너뛰기




Volumn 33, Issue 3, 2013, Pages 611-628

Beyond identification: Emerging and future uses for maldi-tof mass spectrometry in the clinical microbiology laboratory.

Author keywords

Antimicrobial susceptibility testing; Bacteremia; Bloodstream infection; Direct identification; Machine learning; MALDI TOF; Mass spectrometry; Urinary tract infection

Indexed keywords

ANTIBIOTIC AGENT;

EID: 84881528901     PISSN: 02722712     EISSN: 15579832     Source Type: Journal    
DOI: 10.1016/j.cll.2013.03.013     Document Type: Review
Times cited : (40)

References (75)
  • 1
    • 84860015342 scopus 로고    scopus 로고
    • Biomedical mass spectrometry in today's and tomorrow's clinical microbiology laboratories
    • van Belkum A., Welker M., Erhard M., et al. Biomedical mass spectrometry in today's and tomorrow's clinical microbiology laboratories. JClin Microbiol 2012, 1(50):1513-1517.
    • (2012) JClin Microbiol , vol.1 , Issue.50 , pp. 1513-1517
    • van Belkum, A.1    Welker, M.2    Erhard, M.3
  • 2
    • 84876217399 scopus 로고    scopus 로고
    • MALDI TOF MS profiling of bacteria at the strain level: a review
    • Sandrin T.R., Goldstein J.E., Schumaker S. MALDI TOF MS profiling of bacteria at the strain level: a review. Mass Spectrom Rev 2013, 32(3):188-217.
    • (2013) Mass Spectrom Rev , vol.32 , Issue.3 , pp. 188-217
    • Sandrin, T.R.1    Goldstein, J.E.2    Schumaker, S.3
  • 3
    • 84858957393 scopus 로고    scopus 로고
    • Robustness of two MALDI-TOF mass spectrometry systems for bacterial identification
    • Carbonnelle E., Grohs P., Jacquier H., et al. Robustness of two MALDI-TOF mass spectrometry systems for bacterial identification. JMicrobiol Methods 2012, 89:133-136.
    • (2012) JMicrobiol Methods , vol.89 , pp. 133-136
    • Carbonnelle, E.1    Grohs, P.2    Jacquier, H.3
  • 4
    • 79551560563 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption ionization-time of flight mass spectrometry for the identification of clinically relevant bacteria
    • Benagli C., Rossi V., Dolina M., et al. Matrix-assisted laser desorption ionization-time of flight mass spectrometry for the identification of clinically relevant bacteria. PLoS One 2011, 6:e16424.
    • (2011) PLoS One , vol.6
    • Benagli, C.1    Rossi, V.2    Dolina, M.3
  • 5
    • 82455162798 scopus 로고    scopus 로고
    • Species identification of clinical isolates of anaerobic bacteria: a comparison of two matrix-assisted laser desorption ionization-time of flight mass spectrometry systems
    • Justesen U.S., Holm A., Knudsen E., et al. Species identification of clinical isolates of anaerobic bacteria: a comparison of two matrix-assisted laser desorption ionization-time of flight mass spectrometry systems. JClin Microbiol 2011, 1(49):4314-4318.
    • (2011) JClin Microbiol , vol.1 , Issue.49 , pp. 4314-4318
    • Justesen, U.S.1    Holm, A.2    Knudsen, E.3
  • 6
    • 84862071299 scopus 로고    scopus 로고
    • Evaluation of the Bruker Biotyper and Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry systems for identification of nonfermenting gram-negative bacilli isolated from cultures from cystic fibrosis patients
    • Marko D.C., Saffert R.T., Cunningham S.A., et al. Evaluation of the Bruker Biotyper and Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry systems for identification of nonfermenting gram-negative bacilli isolated from cultures from cystic fibrosis patients. JClin Microbiol 2012, 1(50):2034-2039.
    • (2012) JClin Microbiol , vol.1 , Issue.50 , pp. 2034-2039
    • Marko, D.C.1    Saffert, R.T.2    Cunningham, S.A.3
  • 7
    • 84876318936 scopus 로고    scopus 로고
    • Performance of matrix-assisted laser desorption-time of flight mass spectrometry for identification of clinical yeast isolates
    • Rosenvinge F.S., Dzajic E., Knudsen E., et al. Performance of matrix-assisted laser desorption-time of flight mass spectrometry for identification of clinical yeast isolates. Mycoses 2013, 56(3):229-235.
    • (2013) Mycoses , vol.56 , Issue.3 , pp. 229-235
    • Rosenvinge, F.S.1    Dzajic, E.2    Knudsen, E.3
  • 8
    • 84865453850 scopus 로고    scopus 로고
    • MALDI-TOF MS Andromas strategy for the routine identification of bacteria, mycobacteria, yeasts, Aspergillus spp. and positive blood cultures
    • Bille E., Dauphin B., Leto J., et al. MALDI-TOF MS Andromas strategy for the routine identification of bacteria, mycobacteria, yeasts, Aspergillus spp. and positive blood cultures. Clin Microbiol Infect 2012, 18:1117-1125.
    • (2012) Clin Microbiol Infect , vol.18 , pp. 1117-1125
    • Bille, E.1    Dauphin, B.2    Leto, J.3
  • 9
    • 23844549277 scopus 로고    scopus 로고
    • MALDI mass spectrometry analysis of high molecular weight proteins from whole bacterial cells: pretreatment of samples with surfactants
    • Meetani M.A., Voorhees K.J. MALDI mass spectrometry analysis of high molecular weight proteins from whole bacterial cells: pretreatment of samples with surfactants. JAm Soc Mass Spectrom 2005, 16:1422-1426.
    • (2005) JAm Soc Mass Spectrom , vol.16 , pp. 1422-1426
    • Meetani, M.A.1    Voorhees, K.J.2
  • 10
    • 0037637533 scopus 로고    scopus 로고
    • Experimental factors affecting the quality and reproducibility of MALDI TOF mass spectra obtained from whole bacteria cells
    • Williams T.L., Andrzejewski D., Lay J.O., et al. Experimental factors affecting the quality and reproducibility of MALDI TOF mass spectra obtained from whole bacteria cells. JAm Soc Mass Spectrom 2003, 14:342-351.
    • (2003) JAm Soc Mass Spectrom , vol.14 , pp. 342-351
    • Williams, T.L.1    Andrzejewski, D.2    Lay, J.O.3
  • 11
    • 84856206216 scopus 로고    scopus 로고
    • Comparison of the MALDI Biotyper system using Sepsityper specimen processing to routine microbiological methods for identification of bacteria from positive blood culture bottles
    • Buchan B.W., Riebe K.M., Ledeboer N.A. Comparison of the MALDI Biotyper system using Sepsityper specimen processing to routine microbiological methods for identification of bacteria from positive blood culture bottles. JClin Microbiol 2012, 1(50):346-352.
    • (2012) JClin Microbiol , vol.1 , Issue.50 , pp. 346-352
    • Buchan, B.W.1    Riebe, K.M.2    Ledeboer, N.A.3
  • 12
    • 0031762306 scopus 로고    scopus 로고
    • The benefit of appropriate empirical antibiotic treatment in patients with bloodstream infection
    • Leibovici L., Shraga I., Drucker M., et al. The benefit of appropriate empirical antibiotic treatment in patients with bloodstream infection. JIntern Med 1998, 244:379-386.
    • (1998) JIntern Med , vol.244 , pp. 379-386
    • Leibovici, L.1    Shraga, I.2    Drucker, M.3
  • 13
    • 0034457796 scopus 로고    scopus 로고
    • Inadequate antimicrobial treatment: an important determinant of outcome for hospitalized patients
    • Kollef M.H. Inadequate antimicrobial treatment: an important determinant of outcome for hospitalized patients. Clin Infect Dis 2000, 31(Suppl 4):S131-S138.
    • (2000) Clin Infect Dis , vol.31 , Issue.SUPPL 4
    • Kollef, M.H.1
  • 15
    • 0020690791 scopus 로고
    • The clinical significance of positive blood cultures: a comprehensive analysis of 500 episodes of bacteremia and fungemia in adults. I. Laboratory and epidemiologic observations
    • Weinstein M.P., Reller L.B., Murphy J.R., et al. The clinical significance of positive blood cultures: a comprehensive analysis of 500 episodes of bacteremia and fungemia in adults. I. Laboratory and epidemiologic observations. Clin Infect Dis 1983, 1(5):35-53.
    • (1983) Clin Infect Dis , vol.1 , Issue.5 , pp. 35-53
    • Weinstein, M.P.1    Reller, L.B.2    Murphy, J.R.3
  • 16
    • 75649119276 scopus 로고    scopus 로고
    • Rapid identification of bacteria in positive blood culture broths by matrix-assisted laser desorption ionization-time of flight mass spectrometry
    • Stevenson L.G., Drake S.K., Murray P.R. Rapid identification of bacteria in positive blood culture broths by matrix-assisted laser desorption ionization-time of flight mass spectrometry. JClin Microbiol 2010, 1(48):444-447.
    • (2010) JClin Microbiol , vol.1 , Issue.48 , pp. 444-447
    • Stevenson, L.G.1    Drake, S.K.2    Murray, P.R.3
  • 17
    • 77950508078 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption ionization-time of flight mass spectrometry for direct bacterial identification from positive blood culture pellets
    • Prod'hom G., Bizzini A., Durussel C., et al. Matrix-assisted laser desorption ionization-time of flight mass spectrometry for direct bacterial identification from positive blood culture pellets. JClin Microbiol 2010, 48:1481-1483.
    • (2010) JClin Microbiol , vol.48 , pp. 1481-1483
    • Prod'hom, G.1    Bizzini, A.2    Durussel, C.3
  • 18
    • 71049140093 scopus 로고    scopus 로고
    • Direct identification of bacteria in positive blood culture bottles by matrix-assisted laser desorption ionisation time-of-flight mass spectrometry
    • La Scola B., Raoult D. Direct identification of bacteria in positive blood culture bottles by matrix-assisted laser desorption ionisation time-of-flight mass spectrometry. PLoS One 2009, 4(11):e8041.
    • (2009) PLoS One , vol.4 , Issue.11
    • La Scola, B.1    Raoult, D.2
  • 19
    • 77951840052 scopus 로고    scopus 로고
    • Real-time identification of bacteria and Candida species in positive blood culture broths by matrix-assisted laser desorption ionization-time of flight mass spectrometry
    • Ferroni A., Suarez S., Beretti J.L., et al. Real-time identification of bacteria and Candida species in positive blood culture broths by matrix-assisted laser desorption ionization-time of flight mass spectrometry. JClin Microbiol 2010, 48:1542-1548.
    • (2010) JClin Microbiol , vol.48 , pp. 1542-1548
    • Ferroni, A.1    Suarez, S.2    Beretti, J.L.3
  • 20
    • 77749258161 scopus 로고    scopus 로고
    • Rapid species diagnosis for invasive candidiasis using mass spectrometry
    • Marinach-Patrice C., Fekkar A., Atanasova R., et al. Rapid species diagnosis for invasive candidiasis using mass spectrometry. PLoS One 2010, 5(1):e8862.
    • (2010) PLoS One , vol.5 , Issue.1
    • Marinach-Patrice, C.1    Fekkar, A.2    Atanasova, R.3
  • 21
    • 84867541388 scopus 로고    scopus 로고
    • Direct identification of bacteria from BacT/ALERT anaerobic positive blood cultures by MALDI-TOF MS: MALDI Sepsityper kit versus an in-house saponin method for bacterial extraction
    • Meex C., Neuville F., Descy J., et al. Direct identification of bacteria from BacT/ALERT anaerobic positive blood cultures by MALDI-TOF MS: MALDI Sepsityper kit versus an in-house saponin method for bacterial extraction. JMed Microbiol 2012, 61:1511-1516.
    • (2012) JMed Microbiol , vol.61 , pp. 1511-1516
    • Meex, C.1    Neuville, F.2    Descy, J.3
  • 22
    • 84874074475 scopus 로고    scopus 로고
    • Rapid identification of bacteria and yeasts from positive BacT/ALERT blood culture bottles by using a lysis-filtration method and MALDI-TOF mass spectrum analysis with SARAMIS database
    • Fothergill A., Kasinathan V., Hyman J., et al. Rapid identification of bacteria and yeasts from positive BacT/ALERT blood culture bottles by using a lysis-filtration method and MALDI-TOF mass spectrum analysis with SARAMIS database. JClin Microbiol 2013, 51(3):805-809.
    • (2013) JClin Microbiol , vol.51 , Issue.3 , pp. 805-809
    • Fothergill, A.1    Kasinathan, V.2    Hyman, J.3
  • 23
    • 84856763848 scopus 로고    scopus 로고
    • Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology
    • Croxatto A., Prod'hom G., Greub G. Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology. FEMS Microbiol Rev 2012, 36:380-407.
    • (2012) FEMS Microbiol Rev , vol.36 , pp. 380-407
    • Croxatto, A.1    Prod'hom, G.2    Greub, G.3
  • 24
    • 84865581936 scopus 로고    scopus 로고
    • An evaluation of three processing methods and the effect of reduced culture times for faster direct identification of pathogens from BacT/ALERT blood cultures by MALDI-TOF MS
    • Loonen A.J., Jansz A.R., Stalpers J., et al. An evaluation of three processing methods and the effect of reduced culture times for faster direct identification of pathogens from BacT/ALERT blood cultures by MALDI-TOF MS. Eur J Clin Microbiol Infect Dis 2012, 31:1575-1583.
    • (2012) Eur J Clin Microbiol Infect Dis , vol.31 , pp. 1575-1583
    • Loonen, A.J.1    Jansz, A.R.2    Stalpers, J.3
  • 25
    • 84869086214 scopus 로고    scopus 로고
    • Identification and susceptibility testing of microorganism by direct inoculation from positive blood culture bottles by combining MALDI-TOF and Vitek-2 Compact is rapid and effective
    • Romero-Gómez M.P., Gómez-Gil R., Paño-Pardo J.R., et al. Identification and susceptibility testing of microorganism by direct inoculation from positive blood culture bottles by combining MALDI-TOF and Vitek-2 Compact is rapid and effective. JInfect 2012, 65:513-520.
    • (2012) JInfect , vol.65 , pp. 513-520
    • Romero-Gómez, M.P.1    Gómez-Gil, R.2    Paño-Pardo, J.R.3
  • 26
    • 78751639868 scopus 로고    scopus 로고
    • The sensitivity of direct identification from positive BacT/ALERTTM (bioMérieux) blood culture bottles by matrix-assisted laser desorption ionization time-of-flight mass spectrometry is low
    • Szabados F., Michels M., Kaase M., et al. The sensitivity of direct identification from positive BacT/ALERTTM (bioMérieux) blood culture bottles by matrix-assisted laser desorption ionization time-of-flight mass spectrometry is low. Clin Microbiol Infect 2011, 1(17):192-195.
    • (2011) Clin Microbiol Infect , vol.1 , Issue.17 , pp. 192-195
    • Szabados, F.1    Michels, M.2    Kaase, M.3
  • 27
    • 77951839484 scopus 로고    scopus 로고
    • Rapid identification of bacteria from positive blood culture bottles by use of matrix-assisted laser desorption-ionization time of flight mass spectrometry fingerprinting
    • Christner M., Rohde H., Wolters M., et al. Rapid identification of bacteria from positive blood culture bottles by use of matrix-assisted laser desorption-ionization time of flight mass spectrometry fingerprinting. JClin Microbiol 2010, 48:1584-1591.
    • (2010) JClin Microbiol , vol.48 , pp. 1584-1591
    • Christner, M.1    Rohde, H.2    Wolters, M.3
  • 28
    • 51349145988 scopus 로고    scopus 로고
    • MALDI-TOF mass signatures for differentiation of yeast species, strain grouping and monitoring of morphogenesis markers
    • Qian J., Cutler J.E., Cole R.B., et al. MALDI-TOF mass signatures for differentiation of yeast species, strain grouping and monitoring of morphogenesis markers. Anal Bioanal Chem 2008, 392:439-449.
    • (2008) Anal Bioanal Chem , vol.392 , pp. 439-449
    • Qian, J.1    Cutler, J.E.2    Cole, R.B.3
  • 29
    • 0032953466 scopus 로고    scopus 로고
    • Times to detection of bacteria and yeasts in BACTEC 9240 blood culture bottles
    • Reisner B.S., Woods G.L. Times to detection of bacteria and yeasts in BACTEC 9240 blood culture bottles. JClin Microbiol 1999, 37:2024-2026.
    • (1999) JClin Microbiol , vol.37 , pp. 2024-2026
    • Reisner, B.S.1    Woods, G.L.2
  • 30
    • 84866450171 scopus 로고    scopus 로고
    • Identification of blood culture isolates directly from positive blood cultures by use of matrix-assisted laser desorption ionization-time of flight mass spectrometry and a commercial extraction system: analysis of performance, cost, and turnaround time
    • Lagacé-Wiens P.R., Adam H.J., Karlowsky J.A., et al. Identification of blood culture isolates directly from positive blood cultures by use of matrix-assisted laser desorption ionization-time of flight mass spectrometry and a commercial extraction system: analysis of performance, cost, and turnaround time. JClin Microbiol 2012, 50:3324-3328.
    • (2012) JClin Microbiol , vol.50 , pp. 3324-3328
    • Lagacé-Wiens, P.R.1    Adam, H.J.2    Karlowsky, J.A.3
  • 31
    • 84555178950 scopus 로고    scopus 로고
    • Direct MALDI-TOF mass spectrometry assay of blood culture broths for rapid identification of Candida species causing bloodstream infections: an observational study in two large microbiology laboratories
    • Spanu T., Posteraro B., Fiori B., et al. Direct MALDI-TOF mass spectrometry assay of blood culture broths for rapid identification of Candida species causing bloodstream infections: an observational study in two large microbiology laboratories. JClin Microbiol 2012, 50:176-179.
    • (2012) JClin Microbiol , vol.50 , pp. 176-179
    • Spanu, T.1    Posteraro, B.2    Fiori, B.3
  • 32
    • 74049132252 scopus 로고    scopus 로고
    • Filamentous fungal characterizations by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • Santos C., Paterson R.R., Venâncio A., et al. Filamentous fungal characterizations by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. JAppl Microbiol 2010, 108:375-385.
    • (2010) JAppl Microbiol , vol.108 , pp. 375-385
    • Santos, C.1    Paterson, R.R.2    Venâncio, A.3
  • 33
    • 84862588530 scopus 로고    scopus 로고
    • Impact of laboratory-reported urine culture colony counts on the diagnosis and treatment of urinary tract infection for hospitalized patients
    • Kwon J.H., Fausone M.K., Du H., et al. Impact of laboratory-reported urine culture colony counts on the diagnosis and treatment of urinary tract infection for hospitalized patients. Am J Clin Pathol 2012, 137:778-784.
    • (2012) Am J Clin Pathol , vol.137 , pp. 778-784
    • Kwon, J.H.1    Fausone, M.K.2    Du, H.3
  • 34
    • 77952898786 scopus 로고    scopus 로고
    • Direct identification of urinary tract pathogens from urine samples by matrix-assisted laser desorption ionization-time of flight mass spectrometry
    • Ferreira L., Sánchez-Juanes F., González-Avila M., et al. Direct identification of urinary tract pathogens from urine samples by matrix-assisted laser desorption ionization-time of flight mass spectrometry. JClin Microbiol 2010, 48:2110-2115.
    • (2010) JClin Microbiol , vol.48 , pp. 2110-2115
    • Ferreira, L.1    Sánchez-Juanes, F.2    González-Avila, M.3
  • 35
    • 84857067535 scopus 로고    scopus 로고
    • Direct identification of bacteria in urine samples by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and relevance of defensins as interfering factors
    • Köhling H.L., Bittner A., Müller K.D., et al. Direct identification of bacteria in urine samples by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and relevance of defensins as interfering factors. JMed Microbiol 2012, 61:339-344.
    • (2012) JMed Microbiol , vol.61 , pp. 339-344
    • Köhling, H.L.1    Bittner, A.2    Müller, K.D.3
  • 36
    • 84881519319 scopus 로고    scopus 로고
    • Direct identification of microbes in urine specimens using mass spectrometry
    • DeMarco M.L., Burnham C.D. Direct identification of microbes in urine specimens using mass spectrometry. Clin Chem 2012, 58(S10):A137.
    • (2012) Clin Chem , vol.58 , Issue.S10
    • DeMarco, M.L.1    Burnham, C.D.2
  • 37
    • 84865548780 scopus 로고    scopus 로고
    • MALDIquant: a versatile R package for the analysis of mass spectrometry data
    • Gibb S., Strimmer K. MALDIquant: a versatile R package for the analysis of mass spectrometry data. Bioinformatics 2012, 1(28):2270-2271.
    • (2012) Bioinformatics , vol.1 , Issue.28 , pp. 2270-2271
    • Gibb, S.1    Strimmer, K.2
  • 38
    • 0030305457 scopus 로고    scopus 로고
    • Alanguage for data analysis and graphics
    • Ihaka R., Gentleman R.R. Alanguage for data analysis and graphics. JComput Graph Stat 1996, 5:299-314.
    • (1996) JComput Graph Stat , vol.5 , pp. 299-314
    • Ihaka, R.1    Gentleman, R.R.2
  • 39
    • 33645507259 scopus 로고    scopus 로고
    • Fishing for biomarkers: analyzing mass spectrometry data with the new ClinProTools software
    • Ketterlinus R., Hsieh S.Y., Teng S.H., et al. Fishing for biomarkers: analyzing mass spectrometry data with the new ClinProTools software. Biotechniques 2005, (Suppl):37-40.
    • (2005) Biotechniques , Issue.SUPPL , pp. 37-40
    • Ketterlinus, R.1    Hsieh, S.Y.2    Teng, S.H.3
  • 40
    • 33748659203 scopus 로고    scopus 로고
    • Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching
    • Du P., Kibbe W.A., Lin S.M. Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinformatics 2006, 1(22):2059-2065.
    • (2006) Bioinformatics , vol.1 , Issue.22 , pp. 2059-2065
    • Du, P.1    Kibbe, W.A.2    Lin, S.M.3
  • 41
    • 80054681091 scopus 로고    scopus 로고
    • An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data
    • Vu T., Valkenborg D., Smets K., et al. An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics 2011, 20(12):405.
    • (2011) BMC Bioinformatics , vol.20 , Issue.12 , pp. 405
    • Vu, T.1    Valkenborg, D.2    Smets, K.3
  • 42
    • 79955702502 scopus 로고    scopus 로고
    • LIBSVM: a library for support vector machines
    • Chang C.C., Lin C.J. LIBSVM: a library for support vector machines. ACM Trans Intell Syst Technol 2011, 2(27):1-27.
    • (2011) ACM Trans Intell Syst Technol , vol.2 , Issue.27 , pp. 1-27
    • Chang, C.C.1    Lin, C.J.2
  • 43
    • 41149136695 scopus 로고    scopus 로고
    • Biomarker profiling and reproducibility study of MALDI-MS measurements of Escherichia coli by analysis of variance-principal component analysis
    • Chen P., Lu Y., Harrington P.B. Biomarker profiling and reproducibility study of MALDI-MS measurements of Escherichia coli by analysis of variance-principal component analysis. Anal Chem 2008, 1(80):1474-1481.
    • (2008) Anal Chem , vol.1 , Issue.80 , pp. 1474-1481
    • Chen, P.1    Lu, Y.2    Harrington, P.B.3
  • 44
    • 77950489985 scopus 로고    scopus 로고
    • Identification of Francisella tularensis by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry: fast, reliable, robust, and cost-effective differentiation on species and subspecies levels
    • Seibold E., Maier T., Kostrzewa M., et al. Identification of Francisella tularensis by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry: fast, reliable, robust, and cost-effective differentiation on species and subspecies levels. JClin Microbiol 2010, 1(48):1061-1069.
    • (2010) JClin Microbiol , vol.1 , Issue.48 , pp. 1061-1069
    • Seibold, E.1    Maier, T.2    Kostrzewa, M.3
  • 45
    • 84885484421 scopus 로고    scopus 로고
    • Discrimination between S.pneumoniae and S. mitis based on sorting of their MALDI mass spectra
    • [Epub ahead of print]
    • Ikryannikova L.N., Filimonova A.V., Malakhova M.V., et al. Discrimination between S.pneumoniae and S. mitis based on sorting of their MALDI mass spectra. Clin Microbiol Infect 2012, [Epub ahead of print]. 10.1111/1469-0691.12113.
    • (2012) Clin Microbiol Infect
    • Ikryannikova, L.N.1    Filimonova, A.V.2    Malakhova, M.V.3
  • 46
    • 42049118310 scopus 로고    scopus 로고
    • Machine learning methods for predictive proteomics
    • Barla A., Jurman G., Riccadonna S., et al. Machine learning methods for predictive proteomics. Brief Bioinform 2008, 1(9):119-128.
    • (2008) Brief Bioinform , vol.1 , Issue.9 , pp. 119-128
    • Barla, A.1    Jurman, G.2    Riccadonna, S.3
  • 47
    • 0025756235 scopus 로고
    • Signal detectability the use of ROC curves and their analyses
    • Centor R.M. Signal detectability the use of ROC curves and their analyses. Med Decis Making 1991, 1(11):102-106.
    • (1991) Med Decis Making , vol.1 , Issue.11 , pp. 102-106
    • Centor, R.M.1
  • 48
    • 0002900357 scopus 로고    scopus 로고
    • The case against accuracy estimation for comparing induction algorithms. Proceeding ICML '98 Proceedings of the Fifteenth International Conference on Machine Learning. San Francisco (CA): Morgan Kaufmann Publishers Inc;
    • Provost F. The case against accuracy estimation for comparing induction algorithms. Proceeding ICML '98 Proceedings of the Fifteenth International Conference on Machine Learning. San Francisco (CA): Morgan Kaufmann Publishers Inc; 1998. p. 445-53.
    • (1998) , pp. 445-453
    • Provost, F.1
  • 50
    • 76749092270 scopus 로고    scopus 로고
    • The WEKA data mining software: an update
    • Available at:
    • Hall M., Frank E., Holmes G., et al. The WEKA data mining software: an update. SIGKDD Explor Newsl 2009, 11:10-18. Available at:. http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.163.817.
    • (2009) SIGKDD Explor Newsl , vol.11 , pp. 10-18
    • Hall, M.1    Frank, E.2    Holmes, G.3
  • 51
    • 0037116832 scopus 로고    scopus 로고
    • Use of proteomic patterns in serum to identify ovarian cancer
    • Petricoin E.F., Ardekani A.M., Hitt B.A., et al. Use of proteomic patterns in serum to identify ovarian cancer. Lancet 2002, 16(359):572-577.
    • (2002) Lancet , vol.16 , Issue.359 , pp. 572-577
    • Petricoin, E.F.1    Ardekani, A.M.2    Hitt, B.A.3
  • 52
    • 2942535913 scopus 로고    scopus 로고
    • Proteomics and cancer: running before we can walk?
    • Check E. Proteomics and cancer: running before we can walk?. Nature 2004, 3(429):496-497.
    • (2004) Nature , vol.3 , Issue.429 , pp. 496-497
    • Check, E.1
  • 53
    • 0024041593 scopus 로고
    • Molecular Koch's postulates applied to microbial pathogenicity
    • Falkow S. Molecular Koch's postulates applied to microbial pathogenicity. Rev Infect Dis 1988, 1(10):S274-S276.
    • (1988) Rev Infect Dis , vol.1 , Issue.10
    • Falkow, S.1
  • 54
    • 84863643686 scopus 로고    scopus 로고
    • Detection of staphylococcus aureus delta-toxin production by whole-cell MALDI-TOF mass spectrometry
    • Gagnaire J., Dauwalder O., Boisset S., et al. Detection of staphylococcus aureus delta-toxin production by whole-cell MALDI-TOF mass spectrometry. PLoS One 2012, 6:7.
    • (2012) PLoS One , vol.6 , pp. 7
    • Gagnaire, J.1    Dauwalder, O.2    Boisset, S.3
  • 55
    • 79951678105 scopus 로고    scopus 로고
    • Bacterial species identification from MALDI-TOF mass spectra through data analysis and machine learning
    • De Bruyne K., Slabbinck B., Waegeman W., et al. Bacterial species identification from MALDI-TOF mass spectra through data analysis and machine learning. Syst Appl Microbiol 2011, 34:20-29.
    • (2011) Syst Appl Microbiol , vol.34 , pp. 20-29
    • De Bruyne, K.1    Slabbinck, B.2    Waegeman, W.3
  • 56
    • 85027939468 scopus 로고    scopus 로고
    • Recognition of Clostridium difficile PCR-ribotypes 001, 027 and 126/078 using an extended MALDI-TOF MS system
    • Reil M., Erhard M., Kuijper E.J., et al. Recognition of Clostridium difficile PCR-ribotypes 001, 027 and 126/078 using an extended MALDI-TOF MS system. Eur J Clin Microbiol Infect Dis 2011, 1(30):1431-1436.
    • (2011) Eur J Clin Microbiol Infect Dis , vol.1 , Issue.30 , pp. 1431-1436
    • Reil, M.1    Erhard, M.2    Kuijper, E.J.3
  • 57
    • 84869214368 scopus 로고    scopus 로고
    • Identification of clinical isolates of α-haemolytic streptococci by 16S rRNA gene sequencing, MALDI TOF MS by MALDI Biotyper and conventional phenotypic methods-a comparison
    • Davies A.P., Reid M., Hadfield S.J., et al. Identification of clinical isolates of α-haemolytic streptococci by 16S rRNA gene sequencing, MALDI TOF MS by MALDI Biotyper and conventional phenotypic methods-a comparison. JClin Microbiol 2012, 50(12):4087-4090.
    • (2012) JClin Microbiol , vol.50 , Issue.12 , pp. 4087-4090
    • Davies, A.P.1    Reid, M.2    Hadfield, S.J.3
  • 58
    • 84865181869 scopus 로고    scopus 로고
    • Differentiation of Streptococcus pneumoniae from nonpneumococcal streptococci of the Streptococcus mitis group by matrix-assisted laser desorption ionization-time of flight mass spectrometry
    • Werno A.M., Christner M., Anderson T.P., et al. Differentiation of Streptococcus pneumoniae from nonpneumococcal streptococci of the Streptococcus mitis group by matrix-assisted laser desorption ionization-time of flight mass spectrometry. JClin Microbiol 2012, 1(50):2863-2867.
    • (2012) JClin Microbiol , vol.1 , Issue.50 , pp. 2863-2867
    • Werno, A.M.1    Christner, M.2    Anderson, T.P.3
  • 59
    • 84865180022 scopus 로고    scopus 로고
    • The use of MALDI-TOF MS to identify vancomycin resistant enterococci and investigate the epidemiology of an outbreak
    • Griffin P.M., Price G.R., Schooneveldt J.M., et al. The use of MALDI-TOF MS to identify vancomycin resistant enterococci and investigate the epidemiology of an outbreak. JClin Microbiol 2012, 50(9):2918-2931.
    • (2012) JClin Microbiol , vol.50 , Issue.9 , pp. 2918-2931
    • Griffin, P.M.1    Price, G.R.2    Schooneveldt, J.M.3
  • 60
    • 0034092552 scopus 로고    scopus 로고
    • Rapid discrimination between methicillin-sensitive and methicillin-resistant Staphylococcus aureus by intact cell mass spectrometry
    • Edwards-Jones V., Claydon M.A., Evason D.J., et al. Rapid discrimination between methicillin-sensitive and methicillin-resistant Staphylococcus aureus by intact cell mass spectrometry. JMed Microbiol 2000, 1(49):295-300.
    • (2000) JMed Microbiol , vol.1 , Issue.49 , pp. 295-300
    • Edwards-Jones, V.1    Claydon, M.A.2    Evason, D.J.3
  • 61
    • 23744468919 scopus 로고    scopus 로고
    • Optimisation of intact cell MALDI method for fingerprinting of methicillin-resistant Staphylococcus aureus
    • Jackson K.A., Edwards-Jones V., Sutton C.W., et al. Optimisation of intact cell MALDI method for fingerprinting of methicillin-resistant Staphylococcus aureus. JMicrobiol Methods 2005, 62:273-284.
    • (2005) JMicrobiol Methods , vol.62 , pp. 273-284
    • Jackson, K.A.1    Edwards-Jones, V.2    Sutton, C.W.3
  • 62
    • 0036828654 scopus 로고    scopus 로고
    • Identification of staphylococcus aureus and determination of its methicillin resistance by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • Du Z., Yang R., Guo Z., et al. Identification of staphylococcus aureus and determination of its methicillin resistance by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Anal Chem 2002, 1(74):5487-5491.
    • (2002) Anal Chem , vol.1 , Issue.74 , pp. 5487-5491
    • Du, Z.1    Yang, R.2    Guo, Z.3
  • 63
    • 78649634917 scopus 로고    scopus 로고
    • MALDI-TOF MS fingerprinting allows for discrimination of major methicillin-resistant Staphylococcus aureus lineages
    • Wolters M., Rohde H., Maier T., et al. MALDI-TOF MS fingerprinting allows for discrimination of major methicillin-resistant Staphylococcus aureus lineages. Int J Med Microbiol 2011, 301:64-68.
    • (2011) Int J Med Microbiol , vol.301 , pp. 64-68
    • Wolters, M.1    Rohde, H.2    Maier, T.3
  • 64
    • 67649392794 scopus 로고    scopus 로고
    • Phylogenetic classification and identification of bacteria by mass spectrometry
    • Freiwald A., Sauer S. Phylogenetic classification and identification of bacteria by mass spectrometry. Nat Protoc 2009, 4:732-742.
    • (2009) Nat Protoc , vol.4 , pp. 732-742
    • Freiwald, A.1    Sauer, S.2
  • 65
    • 0036149342 scopus 로고    scopus 로고
    • Sample preparation of Gram-positive bacteria for identification by matrix assisted laser desorption/ionization time-of-flight
    • Smole S.C., King L.A., Leopold P.E., et al. Sample preparation of Gram-positive bacteria for identification by matrix assisted laser desorption/ionization time-of-flight. JMicrobiol Methods 2002, 48:107-115.
    • (2002) JMicrobiol Methods , vol.48 , pp. 107-115
    • Smole, S.C.1    King, L.A.2    Leopold, P.E.3
  • 66
    • 84872176158 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry for detection of antibiotic resistance mechanisms: from research to routine diagnosis
    • Hrabák J., Chudáčková E., Walková R. Matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry for detection of antibiotic resistance mechanisms: from research to routine diagnosis. Clin Microbiol Rev 2013, 1(26):103-114.
    • (2013) Clin Microbiol Rev , vol.1 , Issue.26 , pp. 103-114
    • Hrabák, J.1    Chudáčková, E.2    Walková, R.3
  • 67
    • 79955525724 scopus 로고    scopus 로고
    • Differentiation of cfiA-negative and cfiA-positive Bacteroides fragilis isolates by matrix-assisted laser desorption ionization-time of flight mass spectrometry
    • Wybo I., Bel A.D., Soetens O., et al. Differentiation of cfiA-negative and cfiA-positive Bacteroides fragilis isolates by matrix-assisted laser desorption ionization-time of flight mass spectrometry. JClin Microbiol 2011, 1(49):1961-1964.
    • (2011) JClin Microbiol , vol.1 , Issue.49 , pp. 1961-1964
    • Wybo, I.1    Bel, A.D.2    Soetens, O.3
  • 69
    • 0029125391 scopus 로고
    • Genotypic identification of two groups within the species Bacteroides fragilis by ribotyping and by analysis of PCR-generated fragment patterns and insertion sequence content
    • Podglajen I., Breuil J., Casin I., et al. Genotypic identification of two groups within the species Bacteroides fragilis by ribotyping and by analysis of PCR-generated fragment patterns and insertion sequence content. JBacteriol 1995, 1(177):5270-5275.
    • (1995) JBacteriol , vol.1 , Issue.177 , pp. 5270-5275
    • Podglajen, I.1    Breuil, J.2    Casin, I.3
  • 70
    • 0015327122 scopus 로고
    • Novel method for detection of β-lactamases by using a chromogenic cephalosporin substrate
    • O'Callaghan C.H., Morris A., Kirby S.M., et al. Novel method for detection of β-lactamases by using a chromogenic cephalosporin substrate. Antimicrob Agents Chemother 1972, 1(1):283-288.
    • (1972) Antimicrob Agents Chemother , vol.1 , Issue.1 , pp. 283-288
    • O'Callaghan, C.H.1    Morris, A.2    Kirby, S.M.3
  • 71
    • 84857382388 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption ionization-time of flight mass spectrometry-based functional assay for rapid detection of resistance against B-lactam antibiotics
    • Sparbier K., Schubert S., Weller U., et al. Matrix-assisted laser desorption ionization-time of flight mass spectrometry-based functional assay for rapid detection of resistance against B-lactam antibiotics. JClin Microbiol 2012, 1(50):927-937.
    • (2012) JClin Microbiol , vol.1 , Issue.50 , pp. 927-937
    • Sparbier, K.1    Schubert, S.2    Weller, U.3
  • 72
    • 80052230956 scopus 로고    scopus 로고
    • Using matrix-assisted laser desorption ionization-time of flight mass spectrometry to detect carbapenem resistance within 1 to 2.5hours
    • Burckhardt I., Zimmermann S. Using matrix-assisted laser desorption ionization-time of flight mass spectrometry to detect carbapenem resistance within 1 to 2.5hours. JClin Microbiol 2011, 1(49):3321-3324.
    • (2011) JClin Microbiol , vol.1 , Issue.49 , pp. 3321-3324
    • Burckhardt, I.1    Zimmermann, S.2
  • 73
    • 80052197551 scopus 로고    scopus 로고
    • Carbapenemase activity detection by matrix-assisted laser desorption ionization-time of flight mass spectrometry
    • Hrabák J., Walková R., Študentová V., et al. Carbapenemase activity detection by matrix-assisted laser desorption ionization-time of flight mass spectrometry. JClin Microbiol 2011, 1(49):3222-3227.
    • (2011) JClin Microbiol , vol.1 , Issue.49 , pp. 3222-3227
    • Hrabák, J.1    Walková, R.2    Študentová, V.3
  • 74
    • 64649088018 scopus 로고    scopus 로고
    • Outer membrane permeability and antibiotic resistance
    • Delcour A.H. Outer membrane permeability and antibiotic resistance. Biochim Biophys Acta 2009, 1794:808-816.
    • (2009) Biochim Biophys Acta , vol.1794 , pp. 808-816
    • Delcour, A.H.1
  • 75
    • 30744477254 scopus 로고    scopus 로고
    • Use of several inducer and substrate antibiotic combinations in a disk approximation assay format to screen for AmpC induction in patient isolates of Pseudomonas aeruginosa, Enterobacter spp., Citrobacter spp., and Serratia spp
    • Dunne W.M., Hardin D.J. Use of several inducer and substrate antibiotic combinations in a disk approximation assay format to screen for AmpC induction in patient isolates of Pseudomonas aeruginosa, Enterobacter spp., Citrobacter spp., and Serratia spp. JClin Microbiol 2005, 1(43):5945-5949.
    • (2005) JClin Microbiol , vol.1 , Issue.43 , pp. 5945-5949
    • Dunne, W.M.1    Hardin, D.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.