A Novel Method for Rapid Hybridization of DNA to a Solid Support

PLoS ONE

Volumn 8, Issue 8, 2013, Pages

  Pettersson, Erik ^a,c   Ahmadian, Afshin ^a   Ståhl, Patrik L ^b  

^a SCIENCE FOR LIFE LABORATORY   (Sweden)

^b KAROLINSKA INSTITUTE   (Sweden)

^c STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; DNA HYBRIDIZATION; DNA MICROARRAY; DNA PROBE; ENVIRONMENTAL TEMPERATURE; GENE TARGETING; MAGNETIC FORCED HYBRIDIZATION; MULTIPLEX COMPETITIVE HYBRIDIZATION; NONHUMAN; QUALITY CONTROL; STRAIN DIFFERENCE; VIRUS STRAIN; VIRUS TYPING; WART VIRUS;

DNA; GENOTYPING TECHNIQUES; HUMANS; MAGNETIC FIELDS; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE PROBES; PAPILLOMAVIRIDAE; SENSITIVITY AND SPECIFICITY;

EID: 84881506767     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0070504     Document Type: Article

References (19)

1. Pamme N, (2006) Magnetism and microfluidics. Lab Chip 6: 24-38.
2. Graham DL, Ferreira HA, Freitas PP, (2004) Magnetoresistive-based biosensors and biochips. Trends Biotechnol 22: 455-462.
3. Miller MM, Sheehan PE, Edelstein RL, Tamanaha CR, Zhong L, et al. (2001) A DNA array sensor utilizing magnetic microbeads and magnetoelectronic detection. Journal of Magnetism and Magnetic Materials 225: 138.
4. Ståhl PL, Gantelius J, Natanaelsson C, Ahmadian A, Andersson-Svahn H, et al. (2007) Visual DNA - identification of DNA sequence variations by bead trapping. Genomics 90: 741-745.
5. Pettersson E, Ståhl PL, Mahdessian H, Käller M, Lundeberg J, et al. (2009) Visual DNA as a diagnostic tool. Electrophoresis 30: 3691-3695.
6. Pamme N, Manz A, (2004) On-chip free-flow magnetophoresis: continuous flow separation of magnetic particles and agglomerates. Anal Chem 76: 7250-7256.
7. DeAngelis MM, Wang DG, Hawkins TL, (1995) Solid-phase reversible immobilization for the isolation of PCR products. Nucleic Acids Research 23: 4742-4743.
8. Shendure J, Porreca GJ, Reppas N, Lin X, McCutcheon JP, et al. (2005) Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309: 1728-1732.
9. Graham D, Ferreira H, Felicianoa N, Freitas P, Clarke L, et al. (2005) Magnetic field-assisted DNA hybridisation and simultaneous detection using micron-sized spin-valve sensors and magnetic nanoparticles. Sensors and Actuators B: Chemical 107: 936-944.
10. Martins VC, Cardoso FA, Germano J, Cardoso S, Sousa L, et al. (2009) Femtomolar limit of detection with a magnetoresistive biochip. Biosens Bioelectron 24: 2690-2695.
11. Ferreira HA, Feliciano N, Graham DL, Clarke LA, Amaral MD, et al. (2005) Rapid DNA hybridization based on ac field focusing of magnetically labeled target DNA. Appl Phys Lett 87: 3901.
12. Kaller M, Hultin E, Zheng B, Gharizadeh B, Wallin K, et al. (2005) Tag-array based HPV genotyping by competitive hybridization and extension. Journal of Virological Methods 129: 102-112.
13. Gharizadeh B, Käller M, Nyrén P, Andersson A, Uhlén M, et al. (2003) Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays. Nucleic Acids Research. e146.
14. Gravitt PE, Peyton CL, Alessi TQ, Wheeler CM, Coutlée F, et al. (2000) Improved amplification of genital human papillomaviruses. J Clin Microbiol 38: 357-361.
15. Gharizadeh B, Kalantari M, Garcia CA, Johansson B, Nyrén P, (2001) Typing of human papillomavirus by pyrosequencing. Lab Invest 81: 673-679.
16. van den Brule AJ, Pol R, Fransen-Daalmeijer N, Schouls LM, Meijer CJ, et al. (2002) GP5+/6+ PCR followed by reverse line blot analysis enables rapid and high-throughput identification of human papillomavirus genotypes. J Clin Microbiol 40: 779-787.
17. Park TC, Kim CJ, Koh YM, Lee KH, Yoon JH, et al. (2004) Human papillomavirus genotyping by the DNA chip in the cervical neoplasia. DNA Cell Biol 23: 119-125.
18. Monsonego J, Bohbot JM, Pollini G, Krawec C, Vincent C, et al. (2005) Performance of the Roche AMPLICOR human papillomavirus (HPV) test in prediction of cervical intraepithelial neoplasia (CIN) in women with abnormal PAP smear. Gynecol Oncol 99: 160-168.
19. TwistDx website. Available: http://www.twistdx.co.uk/our_technology/. Accessed 2013 Jul 17.