The life history of pseudomonas syringae: Linking agriculture to earth system processes

Annual Review of Phytopathology

Volumn 51, Issue , 2013, Pages 85-104

  Morris, Cindy E ^a   Monteil, Caroline L ^a   Berge, Odile ^a  

^a INRA   (France)

Author keywords

Aerial dissemination; Alpine habitats; Epidemiology; Evolutionary ecology; Ice nucleation activity

Indexed keywords

AGRICULTURE; ARTICLE; ASTRONOMY; ECOLOGY; ECOSYSTEM; EVOLUTION; GENETIC VARIABILITY; GENETICS; GENOMICS; MICROBIOLOGY; PHYSIOLOGY; PLANT; PLANT DISEASE; PSEUDOMONAS SYRINGAE;

AGRICULTURE; BIOLOGICAL EVOLUTION; EARTH (PLANET); ECOLOGY; ECOSYSTEM; GENETIC VARIATION; GENOMICS; PLANT DISEASES; PLANTS; PSEUDOMONAS SYRINGAE;

EID: 84881401888     PISSN: 00664286     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev-phyto-082712-102402     Document Type: Article

References (89)

1. Amato P, Parazols M, Sancelme M, Laj P, Mailhot G, Delort A-M. 2007. Microorganisms isolated from the water phase of tropospheric clouds at the Puy de D̂ome: major groups and growth abilities at low temperatures. FEMS Microbiol. Ecol. 59:242-54
2. Araki H, Tian D, Goss EM, Jakob K, Halldorsdottir SS, et al. 2006. Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis. Proc. Natl. Acad. Sci. USA 103:5887-92
3. Attard E, Yang H, Delort A-M, Amato P, P? oschl U, et al. 2012. Effects of atmospheric conditions on ice nucleation activity of Pseudomonas. Atmos. Chem. Phys. 12:10667-77
4. Baltrus DA, Nishimura MT, Romanchuk A, Chang JH, Mukhtar MS, et al. 2011. Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. PLoS Pathog. 7:e1002132
5. Battistuzzi FU, Feijao A, Hedges SB. 2004. A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land. BMC Evol. Biol. 4:44
6. Battistuzzi FU, Hedges SB. 2009. A major clade of prokaryotes with ancient adaptations to life on land. Mol. Biol. Evol. 26:335-43
7. Bell CD, Soltis DE, Soltis PS. 2010. The age and diversification of the angiosperms re-revisited. Am. J. Bot. 97:1296-303
8. Bergh O, Borsheim KY, Bratbak G, Heldal M. 1989. High abundance of viruses found in aquatic environments. Nature 340:467-68
9. Biers EJ, Sun S, Howard EC. 2009. Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome. Appl. Environ. Microbiol. 75:2221-29
10. Buell CR, Joardar V, Lindeberg M, Selengut J, Paulson IT, et al. 2003. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc. Nat. Acad. Sci. USA 100:10181-86
11. Burrows SM, Butler T, J ? ockel P, Tost H, Kerkweg A, et al. 2009. Bacteria in the global atmosphere. Part 2: Modelling of emissions and transport between different ecosystems. Atmos. Chem. Phys. 9:9281-97
12. Butterworth J, McCartney HA. 1991. The dispersal of bacteria from leaf surfaces by water splash. J. Appl. Bacteriol. 71:484-96
13. Cangelosi GA, Freitag NE, Buckley MR. 2004. From outside to inside: environmental microorganisms as human pathogens. Am. Acad. Microbiol. Rep., Am. Soc. Microbiol., Washington, DC
14. Carini P, Steindler L, Beszteri S, Giovannoni SJ. 2013. Nutrient requirements for growth of the extreme oligotroph "Candidatus Pelagibacter ubique" HTCC1062 on a defined medium. ISME J. 7:592-602
15. Clarke CR, Cai R, Studholme DJ, Guttman DS, Vinatzer BA. 2010. Pseudomonas syringae strains naturally lacking the classical P. syringae hrp/hrc locus are common leaf colonizers equipped with an atypical type III secretion system. Mol. Plant-Microbe Interact. 23:198-210
16. Cockell CS. 2000. The ultraviolet history of the terrestrial planets: implications for biological evolution. Planet. Space Sci. 48:203-14
17. Cohen JM. 2012. Are we killing the rain? Meditations on the water cycle and, more particularly, on bioprecipitation. Water Int. 37:670-82
18. Constantinidou HA, Hirano SS, Baker LS, Upper CD. 1990. Atmospheric dispersal of ice nucleationactive bacteria: the role of rain. Phytopathology 80:934-37
19. Cother EJ, Gilbert RL. 1990. Presence of Erwinia chrysanthemi in twomajor river systems and their alpine sources in Australia. J. Appl. Bacteriol. 69:729-38
20. Cunnac S, Lindeberg M, Collmer A. 2009. Pseudomonas syringae type III secretion system effectors: repertoires in search of functions. Curr. Opin. Microbiol. 12:53-60
21. Demanèche S, Bertolla F, Buret F, Nalin R, SaillandA, et al. 2001. Laboratory-scale evidence for lightningmediated gene transfer in soil. Appl. Environ. Microbiol. 67:3440-44
22. Demba Diallo M, Monteil CL, Vinatzer BA, Clarke CR, Glaux C, et al. 2012. Pseudomonas syringae naturally lacking the canonical type III secretion system are ubiquitous in nonagricultural habitats, are phylogenetically diverse and can be pathogenic. ISME J. 6:1325-35
23. Edwards AR, Vandenbussche RA, Wichman HA, Orser CS. 1994. Unusual pattern of bacterial ice nucleation gene evolution. Mol. Biol. Evol. 11:911-20
24. Feil H, Feil W, Chain P, Marimer F, DiBartolo G, et al. 2005. Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. Proc. Nat. Acad. Sci. USA 102:11064-69
25. Franc GD. 1988. Long distance transport of Erwinia carotovora in the atmosphere and surface water. PhD thesis. Colo. State Univ., Fort Collins. 131 pp.
26. Fuentes E, Coe H, Green D, de Leeuw G, McFiggans G. 2010. Laboratory-generated primary marine aerosol via bubble-bursting and atomization. Atmos. Meas. Tech. 3:141-62
27. Garcia E, Hill TCJ, Prenni AJ, DeMott PJ, Franc GD, Kreidenweis SM. 2012. Biogenic ice nuclei in boundary layer air over two U. S. high plains agricultural regions. J. Geophys. Res. doi:10. 1029/2012JD018343
28. Gastaldo RA, DiMichele WA, Pfefferkorn HW. 1996. Out of the icehouse into the greenhouse: a late Paleozoic analog for modern global vegetational change. GSA Today 6(10):1-7
29. Gonçalves FLT, Martins JA, Albrecht RI, Morales CA, Silva Dias MA, Morris CE. 2012. Effect of bacterial ice nuclei on the frequency and intensity of lightning activity inferred by the BRAMS model. Atmos. Chem. Phys. 12:5677-89
30. Green S, Studholme DJ, Laue BE, Dorati F, LovellH, et al. 2010. Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS ONE 5:e10224
31. Gregory PH. 1961. The Microbiology of the Atmosphere. New York: Interscience Inc. 251 pp.
32. Gross DC, Cody YS, Proebsting EL Jr, Radamaker GK, Spotts RA. 1983. Distribution, population dynamics, and characteristics of ice nucleation-active bacteria in deciduous fruit tree orchards. Appl. Environ. Microbiol. 46:1370-79
33. Gross DC, Cody YS, Proebsting EL Jr, Radamaker GK, Spotts RA. 1984. Ecotypes and pathogenicity of ice-nucleation-active Pseudomonas syringae isolated from deciduous fruit tree orchards. Phytopathology 74:241-48
34. Hall EK, Besemer K, Kohl L, Preiler C, Riedel K, et al. 2012. Effects of resource chemistry on the composition and function of stream hyporheic biofilms. Front. Microbiol. 3:35
35. Hansen EM, Reeser PW, Sutton W. 2012. Phytophthora beyond agriculture. Annu. Rev. Phytopathol. 50:359-78
36. Harrison MD, Franc GD, Maddox DA, Michaud JE, McCarter-Zorner NJ. 1987. Presence of Erwinia carotovora in surface water in North America. J. Appl. Bacteriol. 62:565-70
37. Hirano SS, Upper CD. 2000. Bacteria in the leaf ecosystem with emphasis on Pseudomonas syringae, a pathogen, ice nucleus, and epiphyte. Microbiol. Mol. Biol. Rev. 64:624-53
38. Huysman F, Verstraete W. 1993. Water-facilitated transport of bacteria in unsaturated soil columns: influence of cell surface hydrophobicity and soil properties. Soil Biol. Biochem. 25:83-90
39. Joardar V, Lindeberg M, Jackson RW, Selengut J, Dodson R, et al. 2005. Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. J. Bacteriol. 187:6488-98
40. Joly M, Attard E, Sancelme M, Deguillaume L, Guilbaud C, et al. 2013. Ice nucleation activity of bacteria from cloud water. Atmos. Environ. 70:392-400
41. Kasting JF, Siefert JL. 2002. Life and the evolution of Earth's atmosphere. Science 296:1066-67
42. Kenrick P, Crane PR. 1997. The origin and early evolution of plants on land. Nature 389:33-39
43. Knauth LP. 1998. Salinity history of the Earth's early ocean. Nature 395:554-55
44. Lannou C. 2012. Variation and selection of quantitative traits in plant pathogens. Annu. Rev. Phytopathol. 50:319-38
45. Le Gac M, Plucain J, Hindre T, Lenski RE, Schneider D. 2012. Ecological and evolutionary dynamics of coexisting lineages during a long-term experiment with Escherichia coli. Proc. Natl. Acad. Sci. USA 109:9487-92
46. Lindemann J, Constantinidiou HA, Barchet WR, Upper CD. 1982. Plants as source of airbone bacteria, including ice nucleation-active bacteria. Appl. Environ. Microbiol. 44:1059-63
47. Mann CC. 2011. 1493: Uncovering the New World Columbus Created. New York: Alfred A. Knopf. 544 pp.
48. McCarter-Zorner NJ, Franc GD, Harrison MD, Michaud JE, Quinn CE. 1984. Soft rot Erwinia bacteria in surface and underground waters in southern Scotland and in Colorado, United States. J. Appl. Bacteriol. 57:95-105
49. McDonald JE. 1962. Collection and washout of airborne pollens and spores by raindrops. Science 135:435-37
50. Mention P, Lavigne D, Leix-Henry F, Bouchu S, Morris CE, et al. 2004. Bact'eriose du melon: acquis et perspectives. PHM Rev. Hortic. 459:22-26
51. Mithani A, Hein J, Preston GM. 2011. Comparative analysis of metabolic networks provides insight into the evolution of plant pathogenic and nonpathogenic lifestyles in Pseudomonas. Mol. Biol. Evol. 28:483-99
52. Mohler O, Demott PJ, Vali G, Levin Z. 2007. Microbiology and atmospheric processes: the role of biological particles in cloud physics. Biogeosciences 4:1059-71
53. Molinier C, Fournier PE, Raoult D. 2010. Genome analysis of microorganisms living in amoebae reveals a melting pot of evolution. FEMS Microbial. Rev. 34:281-94
54. Monier J-M, Lindow SE. 2003. Differential survival of solitary and aggregated cells promotes aggregate formation on leaf surfaces. Proc. Natl. Acad. Sci. USA 100:15977-82
55. Monier J-M, Lindow SE. 2005. Aggregates of resident bacteria facilitate survival of immigrant bacteria on leaf surfaces. Microb. Ecol. 49:343-52
56. Monteil CL. 2011. É cologie de Pseudomonas syringae dans un bassin versant: vers un modele de transfert des habitats naturels aux agro-systèmes. PhD thesis. Universit'e d'Avignon et Pays de Vaucluse, Avignon. 255 pp.
57. Monteil CL, Guilbaud C, Glaux C, Lafolie F, Soubeyrand S, Morris CE. 2012. Emigration of the plant pathogen Pseudomonas syringae from leaf litter contributes to its population dynamics in alpine snowpack. Environ. Microbiol. 14:2099-112
58. Morris CE, Bardin M, Kinkel LL, Moury B, Nicot PC, Sands DC. 2009. Expanding the paradigms of plant pathogen life history and evolution of parasitic fitness beyond agricultural boundaries. PLoS Pathogens 5(12):e1000693
59. Morris CE, Glaux C, Latour X, Gardan L, Samson R, Pitrat M. 2000. The relationship of host range, physiology, and genotype to virulence on cantaloupe in Pseudomonas syringae from cantaloupe blight epidemics in France. Phytopathology 90:636-46
60. Morris CE, Kinkel LL, Kun X, Prior P, Sands DC. 2007. A surprising niche for the plant pathogen Pseudomonas syringae. Infect. Genet. Evol. 7:84-92
61. Morris CE, Leyronas C, Nicot PC. 2013. Movement of bioaerosols in the atmosphere and its consequences on climate and microbial evolution. In Applilcations of Aerosol Science, ed. M Lazaridis, I Colbeck. Hoboken:Wiley
62. Morris CE, Monier J-M. 2003. The ecological significance of biofilm formation by plant-associated bacteria. Annu. Rev. Phytopathol. 41:429-53
63. Morris CE, Sands DC, Bardin M, Jaenicke R, Vogel B, et al. 2011. Microbiology and atmospheric processes: research challenges concerning the impact of airborne micro-organisms on the atmosphere and climate. Biogeosciences 8:17-25
64. Morris CE, Sands DC, Glaux C, Samsatly J, Asaad S, et al. 2012. Urediospores of rust fungi are ice nucleation active at> -10°Cand harbor ice nucleation active bacteria. Atmos. Chem. Phys. Discuss. 13:4223-33
65. Morris CE, Sands DC, Vanneste JL, Montarry J, Oakley B, et al. 2010. Inferring the evolutionary history of the plant pathogen Pseudomonas syringae from its biogeography in headwaters of rivers inNorth America, Europe and New Zealand. mBio 1(3):e00107-10
66. Morris CE, Sands DC, Vinatzer BA, Glaux C, Guilbaud C, et al. 2008. The life history of the plant pathogen Pseudomonas syringae is linked to the water cycle. ISME J. 2:321-34
67. Nagarajan S, Singh DV. 1990. Long-distance dispersion of rust pathogens. Annu. Rev. Phytopathol. 28:139-53
68. Newton RJ, Jones SE, Eiler A, McMahon KD, Bertilsson S. 2011. A guide to the natural history of freshwater lake bacteria. Microbiol. Mol. Biol. Rev. 75:14-49
69. O'Brien HE, Thakur S, Gong Y, Fung P, Zhang J, et al. 2012. Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut. BMC Microbiol. 12:141
70. Oki T, Kanae S. 2006. Global hydrological cycles and the world water resources. Science 313:1068-72
71. Palmero D, Rodriguez JM, de Cara M, Camacho F, Iglesias C, Tello JC. 2011. Fungal microbiota from rain water and pathogenicity of Fusarium species isolated from atmospheric dust and rainfall dust. J. Ind. Microbiol. Biotechnol. 38:13-20
72. Pesciaroli C, Cupini F, Selbmann L, Barghini P, Fenice M. 2012. Temperature preferences of bacteria isolated from seawater collected in Kandalaksha Bay, White Sea, Russia. Polar Biol. 35:435-45
73. Portillo MC, Anderson SP, Fierer N. 2012. Temporal variability in the diversity and composition of stream bacterioplankton communities. Environ. Microbiol. 14:2417-28
74. Riffaud CM-H, Glaux C, Guilbaud C, Dominguez H, Prior P, Morris CE. 2003. Epidemiological clues for developing methods of control of bacterial blight of cantaloupe caused by Pseudomonas syringae pv. aptata. In Pseudomonas syringae and Related Pathogens: Biology and Genetics, ed. NS Iacobellis, A Collmer, SW Hutcheson, JW Mansfield, CE Morris, J Murillo, NW Schaad, DE Staed, G Surico, MS Ullrich, pp. 3-15. London: Kluwer Plenum
75. RiffaudCM-H, Morris CE. 2002. Detection of Pseudomonas syringae pv. aptata in irrigation water retention basins by immunofluorescence colony staining. Eur. J. Plant Pathol. 108:539-45
76. Sands DC, Langhans VE, Scharen AL, de Smet G. 1982. The association between bacteria and rain and possible resultant meteorological implications. J. Hungarian Meteorol. Serv. 86:148-52
77. Savin SM. 1977. The history of the Earth's surface temperature during the past 100 million years. Annu. Rev. Earth Planet. Sci. 5:319-55
78. Scortichini M, Marcelletti S, Ferrante P, Petriccione M, Firrao G. 2012. Pseudomonas syringae pv. actinidiae: a re-emerging, multi-faceted, pandemic pathogen. Mol. Plant Pathol. 13:631-40
79. Scortichini M, Marchesi U, Angelucci L. 2000. Occurrence of Pseudomonas avellanae (Psallidas) Janse et al. and related pseudomonads on wild Corylus avellanae trees and genetic relationships with strains isolated from cultivated hazelnuts. J. Phytopathol. 148:523-32
80. Selezska K, Kazmierczak M, M? usken M, Garbe J, Schobert M, et al. 2012. Pseudomonas aeruginosa population structure revisited under environmental focus: impact of water quality and phage pressure. Environ. Microbiol. 14:1952-67
81. Stavrinides J, McCloskey JK, Ochman H. 2009. Pea aphid as both host and vector for the phytopathogenic bacterium Pseudomonas syringae. Appl. Environ. Microbiol. 75:2230-35
82. Stukenbrock EH, McDonald BA. 2008. The origins of plant pathogens in agro-ecosystems. Annu. Rev. Phytopathol. 46:75-100
83. Upper CD, Hirano SS, Dodd KK, Clayton MK. 2003. Factors that affect spread of Pseudomonas syringae in the phyllosphere. Phytopathology 93:1082-92
84. Wichmann G, Sun J, Dementhon K, Glass NL, Lindow SE. 2008. A novel gene, phcA from Pseudomonas syringae induces programmed cell death in the filamentous fungus Neurospora crassa. Mol. Microbiol. 68:672-89
85. Wiehlmann L, Wagner G, Cramer N, Siebert B, Gudowius P, et al. 2007. Population structure of Pseudomonas aeruginosa. Proc. Nat. Acad. Sci. USA 104:8101-6
86. Wilhelm RC, Radtke KJ, Mykytczuk NCS, Greer CW, Whyte LG. 2012. Life at the wedge: the activity and diversity of arctic ice wedge microbial communities. Astrobiology 12:347-60
87. Wolber PK. 1993. Bacterial ice nucleation. Adv. Microb. Physiol. 34:203-37
88. Wommack KE, Colwell RR. 2000. Virioplankton: viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64:69-114
89. Morris CE, Sands DC. 2012. From grains to rain: the link between landscape, airborne microorganisms and climate processes, an e-book. http://bioice. wordpress. com/2012/04/26/from-grains-to-rain-the-link-between- landscape-airborne-microorganisms-andclimate-processes-an-ebook/