Molecular epidemiology of influenza A (H5N1) viruses, Bangladesh, 2007-2011

Preventive Veterinary Medicine

Volumn 111, Issue 3-4, 2013, Pages 314-318

  Hoque, Md Ahasanul ^a   Tun, Hein Min ^b   Hassan, Mohammad Mahmudul ^a   Khan, Shahneaz Ali ^a   Islam, SKM Azizul ^a   Islam, Md Nurul ^a   Giasuddin, Md ^c   Osmani, TABM Muzaffar Goni ^d   Islam, Ariful ^e   Thornton, Ronald Norman ^d   Burgess, Graham William ^f   Skerratt, Lee Francis ^f   Selleck, Paul ^g   Brun, Edgar ^h   Debnath, Nitish Chandra ^a,i   Leung, Frederick Chi Ching ^b,j  

^a Chittagong Government Veterinary College   (Bangladesh)

^b UNIVERSITY OF HONG KONG   (Hong Kong)

^c BANGLADESH LIVESTOCK RESEARCH INSTITUTE   (Bangladesh)

^d Farmgate ^*  (New Zealand)

^e ECOHEALTH ALLIANCE   (United States)

^f JAMES COOK UNIVERSITY   (Australia)

^g CSIRO   (Australia)

^h NORWEGIAN VETERINARY INSTITUTE   (Norway)

ⁱ Food and Agriculture Organization   (Bangladesh)

^j NANJING AGRICULTURAL UNIVERSITY   (China)

more..

Author keywords

Influenza A (H5N1); Phylogenetic reconstruction

Indexed keywords

AVES; INFLUENZA A VIRUS; INFLUENZAVIRUS A;

INFLUENZA VIRUS HEMAGGLUTININ;

ANIMAL; ANIMAL DISEASE; ARTICLE; AVIAN INFLUENZA; BANGLADESH; BAYES THEOREM; BHUTAN; BIRD; BIRD DISEASE; CHICKEN; CLASSIFICATION; EPIDEMIC; EVOLUTION; GENETICS; HUMAN; INDIA; INFLUENZA; INFLUENZA A (H5N1); INFLUENZA VIRUS A H5N1; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR EPIDEMIOLOGY; MOLECULAR GENETICS; PHYLOGENETIC RECONSTRUCTION; PHYLOGENY; SEQUENCE ANALYSIS; VIROLOGY;

INFLUENZA A (H5N1); PHYLOGENETIC RECONSTRUCTION;

ANIMALS; BANGLADESH; BAYES THEOREM; BHUTAN; BIOLOGICAL EVOLUTION; BIRDS; CHICKENS; DISEASE OUTBREAKS; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HUMANS; INDIA; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA IN BIRDS; INFLUENZA, HUMAN; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGENY; POULTRY DISEASES; SEQUENCE ANALYSIS, PROTEIN;

EID: 84881313907     PISSN: 01675877     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.prevetmed.2013.06.003     Document Type: Article

References (14)

1. Dubey S.C., Dahal N., Nagarajan S., Tosh C., Murugkar H.V., Rinzin K., Sharma B., Jain R., Katare M., Patil S., Khandia R., Syed Z., Tripathi S., Behera F., Kumar M., Kulkarni D.D., Krishna L. Isolation and characterization of influenza A virus (subtype H5N1) that caused the first highly pathogenic avian influenza outbreak in chicken in Bhutan. Vet. Microbiol. 2012, 155:100-105.
2. Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
3. Ha Y., Stevens D.J., Skehel J.J., Wiley D.C. X-ray structures of H5 avian and H9 swine influenza virus hemagglutinins bound to avian and human receptor analogs. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:11181-11186.
4. Hatta M., Gao P., Halfmann P., Kawaoka Y. Molecular basis for high virulence of Hong Kong H5N1 influenza A viruses. Science 2001, 293:1840-1842.
5. He G., Qiao J., Dong C., He C., Zhao L., Tian Y. Amantadine-resistance among H5N1 avian influenza viruses isolated in Northern China. Antiviral Res. 2008, 77:72-76.
6. Islam M.R., Haque M.E., Giasuddin M., Chowdhury E.H., Samad M.A., Parvin R., Nooruzzaman M., Rahman M.M., Monoura F. New introduction of clade 2.3.2.1 avian influenza virus (H5N1) into Bangladesh. Transbound. Emerg. Dis. 2012, 59:460-463.
7. Martin D.P., Williamson C., Posada D. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 2005, 21:260-262.
8. Matrosovich M., Zhou N., Kawaoka Y., Webster R. The surface glycoproteins of H5 influenza viruses isolated from humans, chickens, and wild aquatic birds have distinguishable properties. J. Virol. 1999, 73:1146-1155.
9. Nagarajan S., Tosh C., Smith D.K., Peiris J.S., Murugkar H.V., Sridevi R., Kumar M., Katare M., Jain R., Syed Z., Behera P., Cheung C.L., Khandia R. Avian influenza (H5N1) virus of clade 2.3.2 in domestic poultry in India. PLoS ONE 2012, 7:e31844.
10. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
11. Scholtissek C., Quack G., Klenk H.D., Webster R.G. How to overcome resistance of influenza A viruses against adamantane derivatives. Antiviral Res. 1998, 37:83-95.
12. Seo S.H., Hoffmann E., Webster R.G. The NS1 gene of H5N1 influenza viruses circumvents the host anti-viral cytokine responses. Virus Res. 2004, 103:107-113.
13. Shinya K., Hamm S., Hatta M., Ito H., Ito T., Kawaoka Y. PB2 amino acid at position 627 affects replicative efficiency, but not cell tropism, of Hong Kong H5N1 influenza A viruses in mice. Virology 2004, 320:258-266.
14. WHO OIE FAO Continued evolution of highly pathogenic avian influenza A (H5N1): updated nomenclature. Influenza Other Respi. Viruses 2012, 6:1-5.