-
1
-
-
64549150256
-
DNA Excited-State Dynamics: From Single Bases to the Double Helix
-
Middleton, C. T.; de La Harpe, K.; Su, C.; Law, Y. K.; Crespo-Hernández, C. E.; Kohler, B. DNA Excited-State Dynamics: From Single Bases to the Double Helix Annu. Rev. Phys. Chem. 2009, 60, 217-239
-
(2009)
Annu. Rev. Phys. Chem.
, vol.60
, pp. 217-239
-
-
Middleton, C.T.1
De La Harpe, K.2
Su, C.3
Law, Y.K.4
Crespo-Hernández, C.E.5
Kohler, B.6
-
2
-
-
77954255381
-
Nonradiative Decay Mechanisms in DNA Model Systems
-
Kohler, B. Nonradiative Decay Mechanisms in DNA Model Systems J. Phys. Chem. Lett. 2010, 1, 2047-2053
-
(2010)
J. Phys. Chem. Lett.
, vol.1
, pp. 2047-2053
-
-
Kohler, B.1
-
3
-
-
34548572225
-
Ab Initio Molecular Dynamics and Time-Resolved Photoelectron Spectroscopy of Electronically Excited Uracil and Thymine
-
Hudock, H. R.; Levine, B. G.; Thompson, A. L.; Satzger, H.; Townsend, D.; Gador, N.; Ullrich, S.; Stolow, A.; Martínez, T. J. Ab Initio Molecular Dynamics and Time-Resolved Photoelectron Spectroscopy of Electronically Excited Uracil and Thymine J. Phys. Chem. A 2007, 111, 8500-8508
-
(2007)
J. Phys. Chem. A
, vol.111
, pp. 8500-8508
-
-
Hudock, H.R.1
Levine, B.G.2
Thompson, A.L.3
Satzger, H.4
Townsend, D.5
Gador, N.6
Ullrich, S.7
Stolow, A.8
Martínez, T.J.9
-
4
-
-
83055197004
-
Excited State Proton Transfer Is Not Involved in the Ultrafast Deactivation of Guanine-Cytosine Pair in Solution
-
Biemann, L.; Kovalenko, S. A.; Kleinermanns, K.; Mahrwald, R.; Markert, M.; Improta, R. Excited State Proton Transfer Is Not Involved in the Ultrafast Deactivation of Guanine-Cytosine Pair in Solution J. Am. Chem. Soc. 2011, 133, 19664-19667
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 19664-19667
-
-
Biemann, L.1
Kovalenko, S.A.2
Kleinermanns, K.3
Mahrwald, R.4
Markert, M.5
Improta, R.6
-
5
-
-
11844294066
-
Photochemical Selectivity in Guanine-Cytosine Base-Pair Structures
-
Abo-Riziq, A.; Grace, L.; Nir, E.; Kabelac, M.; Hobza, P.; de Vries, M. S. Photochemical Selectivity in Guanine-Cytosine Base-Pair Structures Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 20-23
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 20-23
-
-
Abo-Riziq, A.1
Grace, L.2
Nir, E.3
Kabelac, M.4
Hobza, P.5
De Vries, M.S.6
-
6
-
-
3042559887
-
Ab Initio Studies on the Photophysics of the Guanine-Cytosine Base Pair
-
Sobolewski, A. L.; Domcke, W. Ab Initio Studies on the Photophysics of the Guanine-Cytosine Base Pair Phys. Chem. Chem. Phys. 2004, 6, 2763-2771
-
(2004)
Phys. Chem. Chem. Phys.
, vol.6
, pp. 2763-2771
-
-
Sobolewski, A.L.1
Domcke, W.2
-
7
-
-
29144451968
-
Tautomeric Selectivity of the Excited-State Lifetime of Guanine/Cytosine Base Pairs: The Role of Electron-Driven Proton-Transfer Processes
-
Sobolewski, A. L.; Domcke, W.; Hättig, C. Tautomeric Selectivity of the Excited-State Lifetime of Guanine/Cytosine Base Pairs: The Role of Electron-Driven Proton-Transfer Processes Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 17903-17906
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 17903-17906
-
-
Sobolewski, A.L.1
Domcke, W.2
Hättig, C.3
-
8
-
-
77957929396
-
Proton-Coupled Electron Transfer in DNA on Formation of Radiation-Produced Ion Radicals
-
Kumar, A.; Sevilla, M. D. Proton-Coupled Electron Transfer in DNA on Formation of Radiation-Produced Ion Radicals Chem. Rev. 2010, 110, 7002-7023
-
(2010)
Chem. Rev.
, vol.110
, pp. 7002-7023
-
-
Kumar, A.1
Sevilla, M.D.2
-
9
-
-
24144459117
-
Base Stacking Controls Excited-State Dynamics in A-T DNA
-
Crespo-Hernández, C. E.; Cohen, B.; Kohler, B. Base Stacking Controls Excited-State Dynamics in A-T DNA Nature 2005, 436, 1141-1144
-
(2005)
Nature
, vol.436
, pp. 1141-1144
-
-
Crespo-Hernández, C.E.1
Cohen, B.2
Kohler, B.3
-
10
-
-
48749126017
-
UV Excitation of Single DNA and RNA Strands Produces High Yields of Exciplex States between Two Stacked Bases
-
Takaya, T.; Su, C.; de La Harpe, K.; Crespo-Hernández, C. E.; Kohler, B. UV Excitation of Single DNA and RNA Strands Produces High Yields of Exciplex States between Two Stacked Bases Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 10285-10290
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 10285-10290
-
-
Takaya, T.1
Su, C.2
De La Harpe, K.3
Crespo-Hernández, C.E.4
Kohler, B.5
-
11
-
-
72249119730
-
Deuterium Isotope Effect on Excited-State Dynamics in an Alternating GC Oligonucleotide
-
de La Harpe, K.; Crespo-Hernández, C. E.; Kohler, B. Deuterium Isotope Effect on Excited-State Dynamics in an Alternating GC Oligonucleotide J. Am. Chem. Soc. 2009, 131, 17557-17559
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 17557-17559
-
-
De La Harpe, K.1
Crespo-Hernández, C.E.2
Kohler, B.3
-
12
-
-
0035934184
-
A Long-Range Correction Scheme for Generalized-Gradient-Approximation Exchange Functionals
-
Iikura, H.; Tsuneda, T.; Yanai, T.; Hirao, K. A Long-Range Correction Scheme for Generalized-Gradient-Approximation Exchange Functionals J. Chem. Phys. 2001, 115, 3540-3544
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 3540-3544
-
-
Iikura, H.1
Tsuneda, T.2
Yanai, T.3
Hirao, K.4
-
13
-
-
67849122319
-
Web 3DNA - A Web Server for the Analysis, Reconstruction, and Visualization of Three-Dimensional Nucleic-Acid Structures
-
Zheng, G.; Lu, X.-J.; Olson, W. K. Web 3DNA-A Web Server for the Analysis, Reconstruction, and Visualization of Three-Dimensional Nucleic-Acid Structures Nucleic Acids Res. 2009, 37, W240-W246
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Zheng, G.1
Lu, X.-J.2
Olson, W.K.3
-
14
-
-
34547592557
-
MolProbity: All-Atom Contacts and Structure Validation for Proteins and Nucleic Acids
-
Davis, I. W.; Leaver-Fay, A.; Chen, V. B.; Block, J. N.; Kapral, G. J.; Wang, X.; Murray, L. W.; Arendall, W. B.; Snoeyink, J.; Richardson, J. S. MolProbity: All-Atom Contacts and Structure Validation for Proteins and Nucleic Acids Nucleic Acids Res. 2007, 35, W375-W383
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
Murray, L.W.7
Arendall, W.B.8
Snoeyink, J.9
Richardson, J.S.10
-
15
-
-
67849114552
-
Both Intra and Interstrand Charge-Transfer Excited States in Aqueous B-DNA Are Present at Energies Comparable To, or Just Above, the ππ Excitonic Bright States
-
Lange, A. W.; Herbert, J. M. Both Intra- and Interstrand Charge-Transfer Excited States in Aqueous B-DNA Are Present at Energies Comparable To, or Just Above, the ππ* Excitonic Bright States J. Am. Chem. Soc. 2009, 131, 3913-3922
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 3913-3922
-
-
Lange, A.W.1
Herbert, J.M.2
-
16
-
-
47849112363
-
Simultaneous Benchmarking of Ground- and Excited-State Properties with Long-Range-Corrected Density Functional Theory
-
Rohrdanz, M. A.; Herbert, J. M. Simultaneous Benchmarking of Ground- and Excited-State Properties with Long-Range-Corrected Density Functional Theory J. Chem. Phys. 2008, 129, 034107/1-034107/9
-
(2008)
J. Chem. Phys.
, vol.129
-
-
Rohrdanz, M.A.1
Herbert, J.M.2
-
17
-
-
0037444696
-
Natural Transition Orbitals
-
Martin, R. L. Natural Transition Orbitals J. Chem. Phys. 2003, 118, 4775-4777
-
(2003)
J. Chem. Phys.
, vol.118
, pp. 4775-4777
-
-
Martin, R.L.1
-
18
-
-
83455170264
-
-
University of California: San Francisco, CA
-
Case, D. A.; Darden, T. A.; Cheatham, T. E., III; Simmerling, C. L.; Wang, J.; Duke, R. E.; Luo, R.; Walker, R. C.; Zhang, W.; Merz, K. M.; AMBER11, University of California: San Francisco, CA, 2010.
-
(2010)
AMBER11
-
-
Case, D.A.1
Darden, T.A.2
Cheatham III, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Walker, R.C.8
Zhang, W.9
Merz, K.M.10
-
19
-
-
33746563448
-
Advances in Methods and Algorithms in a Modern Quantum Chemistry Program Package
-
Shao, Y.; Molnar, L. F.; Jung, Y.; Kussmann, J.; Ochsenfeld, C.; Brown, S. T.; Gilbert, A. T. B.; Slipchenko, L. V.; Levchenko, S. V.; O'Neill, D. P. Advances in Methods and Algorithms in a Modern Quantum Chemistry Program Package Phys. Chem. Chem. Phys. 2006, 8, 3172-3191
-
(2006)
Phys. Chem. Chem. Phys.
, vol.8
, pp. 3172-3191
-
-
Shao, Y.1
Molnar, L.F.2
Jung, Y.3
Kussmann, J.4
Ochsenfeld, C.5
Brown, S.T.6
Gilbert, A.T.B.7
Slipchenko, L.V.8
Levchenko, S.V.9
O'Neill, D.P.10
-
20
-
-
33748357356
-
Ab Initio Determination of the Ionization Potentials of DNA and RNA Nucleobases
-
Roca-Sanjuan, D.; Rubio, M.; Merchan, M.; Serrano-Andres, L. Ab Initio Determination of the Ionization Potentials of DNA and RNA Nucleobases J. Chem. Phys. 2006, 125, 084302/1-084302/7
-
(2006)
J. Chem. Phys.
, vol.125
-
-
Roca-Sanjuan, D.1
Rubio, M.2
Merchan, M.3
Serrano-Andres, L.4
-
21
-
-
51549098832
-
Ab Initio Determination of the Electron Affinities of DNA and RNA Nucleobases
-
Roca-Sanjuan, D.; Merchan, M.; Serrano-Andres, L.; Rubio, M. Ab Initio Determination of the Electron Affinities of DNA and RNA Nucleobases J. Chem. Phys. 2008, 129, 095104/1-095104/11
-
(2008)
J. Chem. Phys.
, vol.129
-
-
Roca-Sanjuan, D.1
Merchan, M.2
Serrano-Andres, L.3
Rubio, M.4
-
22
-
-
33645774356
-
Conical Intersections and Double Excitations in Time-Dependent Density Functional Theory
-
Levine, B. G.; Ko, C.; Quenneville, J.; Martínez, T. J. Conical Intersections and Double Excitations in Time-Dependent Density Functional Theory Mol. Phys. 2006, 104, 1039-1051
-
(2006)
Mol. Phys.
, vol.104
, pp. 1039-1051
-
-
Levine, B.G.1
Ko, C.2
Quenneville, J.3
Martínez, T.J.4
-
23
-
-
36048994257
-
Troubleshooting Time-Dependent Density-Functional Theory for Photochemical Applications: Oxirane
-
Cordova, F.; Doriol, L. J.; Ipatov, A.; Casida, M. E.; Filippi, C.; Vela, A. Troubleshooting Time-Dependent Density-Functional Theory for Photochemical Applications: Oxirane J. Chem. Phys. 2007, 127, 164111-164118
-
(2007)
J. Chem. Phys.
, vol.127
, pp. 164111-164118
-
-
Cordova, F.1
Doriol, L.J.2
Ipatov, A.3
Casida, M.E.4
Filippi, C.5
Vela, A.6
-
24
-
-
84862292644
-
Solvent Effects on Electron-Driven Proton-Transfer Processes: Adenine-Thymine Base Pairs
-
Dargiewicz, M.; Biczysko, M.; Improta, R.; Barone, V. Solvent Effects on Electron-Driven Proton-Transfer Processes: Adenine-Thymine Base Pairs Phys. Chem. Chem. Phys. 2012, 14, 8981-8989
-
(2012)
Phys. Chem. Chem. Phys.
, vol.14
, pp. 8981-8989
-
-
Dargiewicz, M.1
Biczysko, M.2
Improta, R.3
Barone, V.4
-
25
-
-
0032216489
-
MacMolPlt: A Graphical User Interface for GAMESS
-
Bode, B. M.; Gordon, M. S. MacMolPlt: A Graphical User Interface for GAMESS J. Mol. Graphics Modell. 1998, 16, 133-138
-
(1998)
J. Mol. Graphics Modell.
, vol.16
, pp. 133-138
-
-
Bode, B.M.1
Gordon, M.S.2
|