The effect of scan length on the reliability of resting-state fMRI connectivity estimates

NeuroImage

Volumn 83, Issue , 2013, Pages 550-558

  Birn, Rasmus M ^a,b   Molloy, Erin K ^a   Patriat, Rémi ^a   Parker, Taurean ^c   Meier, Timothy B ^b   Kirk, Gregory R ^d   Nair, Veena A ^b   Meyerand, M Elizabeth ^a,b   Prabhakaran, Vivek ^a,b  

^a UNIVERSITY OF WISCONSIN SCHOOL OF MEDICINE AND PUBLIC HEALTH   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

^c UNIVERSITY OF ROCHESTER   (United States)

^d UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

FMRI; Functional connectivity; Reliability; Resting state; Scan duration; Scan length

Indexed keywords

ADULT; ARTICLE; CONNECTOME; EYE FIXATION; EYE MOVEMENT; FEMALE; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; HUMAN EXPERIMENT; IMAGE ANALYSIS; IMAGE PROCESSING; MALE; MATHEMATICAL ANALYSIS; NORMAL HUMAN; PRIORITY JOURNAL; RESTING STATE NETWORK; TEST RETEST RELIABILITY; TIME SERIES ANALYSIS; BRAIN; BRAIN MAPPING; COMPUTER ASSISTED DIAGNOSIS; IMAGE ENHANCEMENT; INFORMATION RETRIEVAL; NERVE CELL NETWORK; NUCLEAR MAGNETIC RESONANCE IMAGING; PHYSIOLOGY; PROCEDURES; REPRODUCIBILITY; REST; SAMPLE SIZE; SENSITIVITY AND SPECIFICITY; SIGNAL PROCESSING;

ADULT; BRAIN; BRAIN MAPPING; CONNECTOME; FEMALE; HUMANS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; INFORMATION STORAGE AND RETRIEVAL; MAGNETIC RESONANCE IMAGING; MALE; NERVE NET; REPRODUCIBILITY OF RESULTS; REST; SAMPLE SIZE; SENSITIVITY AND SPECIFICITY; SIGNAL PROCESSING, COMPUTER-ASSISTED;

EID: 84881246490     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2013.05.099     Document Type: Article

References (39)

1. Anderson J.S., Ferguson M.A., Lopez-Larson M., Yurgelun-Todd D. Reproducibility of single-subject functional connectivity measurements. AJNR Am. J. Neuroradiol. 2011, 32:548-555.
2. Birn R.M. The role of physiological noise in resting-state functional connectivity. Neuroimage 2012, 62:864-870.
3. Biswal B., Yetkin F.Z., Haughton V.M., Hyde J.S. Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn. Reson. Med. 1995, 34:537-541.
4. Braun U., Plichta M.M., Esslinger C., Sauer C., Haddad L., Grimm O., Mier D., Mohnke S., Heinz A., Erk S., Walter H., Seiferth N., Kirsch P., Meyer-Lindenberg A. Test-retest reliability of resting-state connectivity network characteristics using fMRI and graph theoretical measures. Neuroimage 2012, 59:1404-1412.
5. Cordes D., Haughton V.M., Arfanakis K., Carew J.D., Turski P.A., Moritz C.H., Quigley M.A., Meyerand M.E. Frequencies contributing to functional connectivity in the cerebral cortex in "resting-state" data. AJNR Am. J. Neuroradiol. 2001, 22:1326-1333.
6. Cox R.W. AFNI: software for analysis and visualization of functional magnetic resonance neuroimages. Comput. Biomed. Res. 1996, 29:162-173.
7. Craddock R.C., James G.A., Holtzheimer P.E., Hu X.P., Mayberg H.S. A whole brain fMRI atlas generated via spatially constrained spectral clustering. Hum. Brain Mapp. 2012, 33:1914-1928.
8. Dice L.R. Measures of the amount of ecologic association between species. Ecology 1945, 26:297-302.
9. Dosenbach N.U., Nardos B., Cohen A.L., Fair D.A., Power J.D., Church J.A., Nelson S.M., Wig G.S., Vogel A.C., Lessov-Schlaggar C.N., Barnes K.A., Dubis J.W., Feczko E., Coalson R.S., Pruett J.R., Barch D.M., Petersen S.E., Schlaggar B.L. Prediction of individual brain maturity using fMRI. Science 2010, 329:1358-1361.
10. Fox M.D., Raichle M.E. Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging. Nat. Rev. Neurosci. 2007, 8:700-711.
11. Fox M.D., Snyder A.Z., Vincent J.L., Corbetta M., Van Essen D.C., Raichle M.E. The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:9673-9678.
12. Friston K.J., Williams S., Howard R., Frackowiak R.S., Turner R. Movement-related effects in fMRI time-series. Magn. Reson. Med. 1996, 35:346-355.
13. Glover G.H., Li T.Q., Ress D. Image-based method for retrospective correction of physiological motion effects in fMRI: RETROICOR. Magn. Reson. Med. 2000, 44:162-167.
14. Harrison B.J., Pujol J., Ortiz H., Fornito A., Pantelis C., Yucel M. Modulation of brain resting-state networks by sad mood induction. PLoS One 2008, 3:e1794.
15. Jones T.B., Bandettini P.A., Kenworthy L., Case L.K., Milleville S.C., Martin A., Birn R.M. Sources of group differences in functional connectivity: an investigation applied to autism spectrum disorder. Neuroimage 2010, 49:401-414.
16. Kalcher K., Huf W., Boubela R.N., Filzmoser P., Pezawas L., Biswal B., Kasper S., Moser E., Windischberger C. Fully exploratory network independent component analysis of the 1000 functional connectomes database. Front. Hum. Neurosci. 2012, 6:301.
17. Kennedy D.P., Courchesne E. The intrinsic functional organization of the brain is altered in autism. Neuroimage 2008, 39:1877-1885.
18. Li Z., Kadivar A., Pluta J., Dunlop J., Wang Z. Test-retest stability analysis of resting brain activity revealed by blood oxygen level-dependent functional MRI. J. Magn. Reson. Imaging 2012, 36:344-354.
19. Mason M.F., Norton M.I., Van Horn J.D., Wegner D.M., Grafton S.T., Macrae C.N. Wandering minds: the default network and stimulus-independent thought. Science 2007, 315:393-395.
20. McAvoy M., Larson-Prior L., Nolan T.S., Vaishnavi S.N., Raichle M.E., d'Avossa G. Resting states affect spontaneous BOLD oscillations in sensory and paralimbic cortex. J. Neurophysiol. 2008, 100:922-931.
21. Meier T.B., Desphande A.S., Vergun S., Nair V.A., Song J., Biswal B.B., Meyerand M.E., Birn R.M., Prabhakaran V. Support vector machine classification and characterization of age-related reorganization of functional brain networks. Neuroimage 2012, 60:601-613.
22. Nir Y., Mukamel R., Dinstein I., Privman E., Harel M., Fisch L., Gelbard-Sagiv H., Kipervasser S., Andelman F., Neufeld M.Y., Kramer U., Arieli A., Fried I., Malach R. Interhemispheric correlations of slow spontaneous neuronal fluctuations revealed in human sensory cortex. Nat. Neurosci. 2008, 11:1100-1108.
23. Patriat R., Molloy E.K., Meier T.B., Kirk G.R., Nair V.A., Meyerand M.E., Prabhakaran V., Birn R.M. The effect of resting condition on resting-state fMRI reliability and consistency: a comparison between resting with eyes open, closed, and fixated. Neuroimage 2013, 78:463-473.
24. Power J.D., Barnes K.A., Snyder A.Z., Schlaggar B.L., Petersen S.E. Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion. Neuroimage 2012, 59:2142-2154.
25. Saad Z.S., Glen D.R., Chen G., Beauchamp M.S., Desai R., Cox R.W. A new method for improving functional-to-structural MRI alignment using local Pearson correlation. Neuroimage 2009, 44:839-848.
26. Satterthwaite T.D., Wolf D.H., Loughead J., Ruparel K., Elliott M.A., Hakonarson H., Gur R.C., Gur R.E. Impact of in-scanner head motion on multiple measures of functional connectivity: relevance for studies of neurodevelopment in youth. Neuroimage 2012, 60:623-632.
27. Shehzad Z., Kelly A.M., Reiss P.T., Gee D.G., Gotimer K., Uddin L.Q., Lee S.H., Margulies D.S., Roy A.K., Biswal B.B., Petkova E., Castellanos F.X., Milham M.P. The resting brain: unconstrained yet reliable. Cereb. Cortex 2009, 19:2209-2229.
28. Shrout P.E., Fleiss J.L. Intraclass correlations: uses in assessing rater reliability. Psychol. Bull. 1979, 86:420-428.
29. Smith S.M., Jenkinson M., Woolrich M.W., Beckmann C.F., Behrens T.E., Johansen-Berg H., Bannister P.R., De Luca M., Drobnjak I., Flitney D.E., Niazy R.K., Saunders J., Vickers J., Zhang Y., De Stefano N., Brady J.M., Matthews P.M. Advances in functional and structural MR image analysis and implementation as FSL. Neuroimage 2004, 23(Suppl. 1):S208-S219.
30. Sørensen T. A method of establishing groups of equal amplitude in plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons. Biol. Skr. 1948, 5:1-34.
31. Talairach J., Tournoux P. Co-Planar Stereotaxic Atlas of the Human Brain 1988, Thieme Medical Publishers, Inc., New York.
32. Thomason M.E., Dennis E.L., Joshi A.A., Joshi S.H., Dinov I.D., Chang C., Henry M.L., Johnson R.F., Thompson P.M., Toga A.W., Glover G.H., Van Horn J.D., Gotlib I.H. Resting-state fMRI can reliably map neural networks in children. Neuroimage 2011, 55:165-175.
33. Van Dijk K.R., Hedden T., Venkataraman A., Evans K.C., Lazar S.W., Buckner R.L. Intrinsic functional connectivity as a tool for human connectomics: theory, properties, and optimization. J. Neurophysiol. 2010, 103:297-321.
34. Van Dijk K.R., Sabuncu M.R., Buckner R.L. The influence of head motion on intrinsic functional connectivity MRI. Neuroimage 2012, 59:431-438.
35. Weissenbacher A., Kasess C., Gerstl F., Lanzenberger R., Moser E., Windischberger C. Correlations and anticorrelations in resting-state functional connectivity MRI: a quantitative comparison of preprocessing strategies. Neuroimage 2009, 47:1408-1416.
36. Woolrich M.W., Jbabdi S., Patenaude B., Chappell M., Makni S., Behrens T., Beckmann C., Jenkinson M., Smith S.M. Bayesian analysis of neuroimaging data in FSL. Neuroimage 2009, 45:S173-S186.
37. Yan C., Liu D., He Y., Zou Q., Zhu C., Zuo X., Long X., Zang Y. Spontaneous brain activity in the default mode network is sensitive to different resting-state conditions with limited cognitive load. PLoS One 2009, 4:e5743.
38. Zhang Y., Brady M., Smith S. Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm. IEEE Trans. Med. Imaging 2001, 20:45-57.
39. Zuo X.N., Xu T., Jiang L., Yang Z., Cao X.Y., He Y., Zang Y.F., Castellanos F.X., Milham M.P. Toward reliable characterization of functional homogeneity in the human brain: preprocessing, scan duration, imaging resolution and computational space. Neuroimage 2013, 65:374-386.