Radiation hybrid QTL mapping of Tdes2 involved in the first meiotic division of wheat

Theoretical and Applied Genetics

Volumn 126, Issue 8, 2013, Pages 1977-1990

  Bassi, F M ^a,b   Kumar, A ^a   Zhang, Q ^a   Paux, E ^c   Huttner, E ^d   Kilian, A ^e   Dizon, R ^a   Feuillet, C ^c   Xu, S S ^e,f   Kianian, S F ^a  

^a NORTH DAKOTA STATE UNIVERSITY   (United States)

^b INTERNATIONAL CENTER FOR AGRICULTURAL RESEARCH IN THE DRY AREAS ICARDA   (Syrian Arab Republic)

^c Diversity and Ecophysiology of Cereals   (France)

^d Australian Centre for International Agricultural Research   (Australia)

^e Diversity Arrays Technology Pty Ltd   (Australia)

^f U S DEPARTMENT OF AGRICULTURE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTIFICIAL DIVERSITY; COMPOSITE INTERVAL MAPPING; GENETIC DIVERSITY; INDEPENDENT ANALYSIS; MEIOTIC DIVISION; POLLEN VIABILITY; RADIATION HYBRIDS; RADIATION TREATMENTS;

CYTOLOGY;

GENES;

TRITICUM AESTIVUM; ZEA MAYS;

ARTICLE; GENE DELETION; GENETIC VARIABILITY; GENETICS; GENOTYPE; MEIOSIS; PLANT CHROMOSOME; PLANT INFERTILITY; PLANT SEED; RADIATION EXPOSURE; RADIATION HYBRID MAPPING; TRANSGENIC PLANT; WHEAT;

CHROMOSOMES, PLANT; GENETIC VARIATION; GENOTYPE; MEIOSIS; PLANT INFERTILITY; PLANTS, GENETICALLY MODIFIED; RADIATION HYBRID MAPPING; SEEDS; SEQUENCE DELETION; TRITICUM;

EID: 84880848668     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-013-2111-z     Document Type: Article

References (73)

1. Akbari M, Wenzl P, Caig V et al (2006) Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome. Theor Appl Genet 113: 1409-1420.
2. Al-Kaff N, Knight E, Bertin I, Foote T, Hart N, Griffiths S, Moore G (2008) Detailed dissection of the chromosomal region containing the Ph1 locus in wheat Triticum aestivum: with deletion mutants and expression profiling. Ann Bot 101: 863-872.
3. Baskaran R (2010) Emerging role of radiation induced bystander effects: cell communications and carcinogenesis. Genome Integr 1: 13.
4. Beadle GW (1930) Genetic and cytological studies of a Mendelian asynaptic in Zea mays. Cornell Agric Exp Stn Mem 129: 1-23.
5. Bolot S, Abrouk M, Masood-Quraishi U et al (2009) The 'inner circle' of the cereal genomes. Curr Opin Plant Biol 12: 119-125.
6. Bourne GH, Danielli JF (1979) International review of cytology, vol 58. Academic Press Inc, London.
7. Brenchley R, Spannagl M, Pfeifer M et al (2012) Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 491(7426): 705-710.
8. Cande ZW, Freeling M (2011) Inna Golubovskaya: the life of a geneticist studying meiosis. Genetics 188(3): 491-498.
9. Caryl AP, Gareth HJ, Franklin FCH (2003) Dissecting plant meiosis using Arabidopsis thaliana mutants. J Exp Botany 54(380): 25-38.
10. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
11. Cox DR, Burmeister M, Price ER, Kim S, Myers RM (1990) Radiation hybrid mapping: a somatic cell genetic method for construction of high-resolution maps of mammalian chromosomes. Science 250: 245-250.
12. de Boer E, Heyting C (2006) The diverse roles of transverse filaments of synaptonemal complexes in meiosis. Chromosoma 115: 220-234.
13. de Givry S, Bouchez M, Chabrier P, Milan D, Schiex T (2005) Carthagene: multi population integrated genetic and radiated hybrid mapping. Bioinformatics 21: 1703-1704.
14. Devos KM, Sorrells ME, Anderson JA et al (1999) Chromosome aberrations in wheat nullisomic-tetrasomic and ditelosomic lines. Cereal Res Commun 27(3): 231-239.
15. Dolezel J, Simkova H, Kubalakova M et al (2009) Chromosome genomics in the Triticeae. In: Feuillet C, Muehlbauer GJ (eds) Genetics and genomics of the Triticeae. Springer, New York, pp 285-316.
16. Elkonin LA, Tsvetova MI (2012) Heritable effect of plant water availability conditions on restoration of male fertility in the "9E" CMS-inducing cytoplasm of sorghum. Front Plant Sci 3: 91.
17. Endo TR, Gill BS (1996) The deletion stock of common wheat. J Hered 87(4): 295-307.
18. Falconer DS, Mackay TFC (1996) Introduction to quantitative genetics, 4th edn. Addison Wesley Longman Limited, Edinburgh Gate.
19. Faraut T (2009) Contribution of radiation hybrids to genome mapping in domestic animals. Cytogenet Genome Res 126: 21-33.
20. Faris JD, Gill BS (2003) Genomic targeting and high-resolution mapping of the domestication gene Q in wheat. Genome 45: 706-719.
21. Franckowiak JD, Lundqvist U (2008) Table of barley genetic stock description. Barley Genetics Newsl 38: 134-164.
22. Gill BS, Friebe B, Endo TR (1991) Standard karyotype and nomenclature system for description of chromosome bands and structural aberrations in wheat (Triticum aestivum). Genome 34: 830-839.
23. Gill KS, Gill BS, Endo TR, Boyko EV (1996) Identification and high-density mapping of gene-rich regions in chromosome group 5 of wheat. Genetics 143: 1001-1012.
24. Goss SJ, Harris H (1975) New method for mapping genes in human chromosomes. Nature 255: 680-684.
25. Guidet F, Rogowsky P, Taylor C, Song W, Langridge P (1991) Cloning and characterisation of a new rye-specific repeated sequence. Genome 34: 81-87.
26. Hallauer AR, Miranda JB (1988) Quantitative research in maize breeding. Iowa State University Press, Ames.
27. Hassold T, Sherman S, Hunt P (2009) Counting cross-overs: characterizing meiotic recombination in mammals. Hum Mol Genet 9(16): 2409-2419.
28. Henderson AS (1970) The time and place of meiotic crossing-over. Annu Rev Genet 4: 295-324.
29. Hernandez-Soriano JM, Ramage RT (1973) Desynaptic genes. Barley Genetics Newsl 4: 123-125.
30. Higgins JD, Sanchez-Moran E, Armstrong SJ, Jones GH, Franklin FC (2005) The Arabidopsis synaptonemal complex protein ZYP1 is required for chromosome synapsis and normal fidelity of crossing over. Genes Dev 19(20): 2488-2500.
31. ae) gene in wheat. Genetics 168: 415-423.
32. Huang BE, George AW, Forrest KL, Kilian A, Hayden MJ, Morell MK, Cavanagh CR (2012) A multiparent advanced generation inter-cross population for genetic analysis in wheat. Plant Biotechnol J 10: 826-839.
33. International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
34. Joppa LR, Williams ND (1977) D-genome substitution monosomics of durum wheat. Crop Sci 17: 772-776.
35. Joppa LR, Williams ND (1988) Langdon durum disomic substitution lines and aneuploid analysis in tetraploid wheat. Genome 30: 222-228.
36. Joppa LR, Williams ND (1993) The Langdon durum disomic-substitutions: development, characteristics, and uses. Agron Abstr, p 68.
37. Kalavacharla V, Hossain K, Gu Y et al (2006) High-resolution radiation hybrid map of wheat chromosome 1D. Genetics 173: 1089-1099.
38. Kim N (2001) Disseminating the genome: joining, resolving, and separating sister chromatids during mitosis and meiosis. Annu Rev Genet 35: 673-745.
39. Kumar A, Bassi FM, Paux E et al (2012a) DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrids of Triticum. BMC Genomics 13: 339.
40. Kumar A, Simons K, Iqbal M et al (2012b) Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii. BMC Genomics 13: 597.
41. Kynast RG, Okagaki RJ, Rines HW, Phillips RL (2002) Maize individualized chromosome and derived radiation hybrid lines and their use in functional genomics. Funct Integr Genomic 2: 60-69.
42. Li HW, Pao WK, Li CH (1945) Desynapsis in the common wheat. Am J Bot 32(2): 92-101.
43. Martini G, Bozzini A (1966) Radiation induced asynaptic muattions in durum wheat (Triticum durum Desf.). Chromosoma 20: 251-266.
44. McIntosh RA, Dubcovsky J, Rogers WJ, Morris C, Apples R, Xia XC (2011) Catalogue of gene symbols for wheat: 2011 supplement. Annu Wheat Newsl 57.
45. Michalak de Jimenez MK, Bassi FM, Ghavami F et al (2013) A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus. Funct Integr Genomics 13: 19-32.
46. Murphy SP, Bass HW (2012) The maize (Zea mays) desynaptic (dy) mutation defines a pathway for meiotic chromosome segregation, linking nuclear morphology, telomere distribution and synapsis. J Cell Sci 125(15): 3681-3690.
47. Paterson AH, Bowers JE, Bruggmann R et al (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457: 551-556.
48. Paux E, Roger D, Badaeva E, Gay G, Bernard M, Sourdille P, Feuillet C (2006) Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B. Plant J 48: 463-474.
49. Paux E, Sourdille P, Salse J et al (2008) A physical map of the 1-gigabase bread wheat chromosome 3B. Science 322: 101-104.
50. Paux E, Faure S, Choulet F et al (2010) Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat. Plant Biotechnol J 8: 196-210.
51. Pawlowski WP, Golubovskaya IN, Cande WZ (2003) Altered nuclear distribution of recombination protein RAD51 in maize mutants suggests the involvement of RAD51 in meiotic homology recognition. Plant Cell 15: 1807-1816.
52. Peterson R, Slovin JP, Chen C (2010) A simplified method for differential staining of aborted and non-aborted pollen grains. Int J Plant Biol 1: e13.
53. Qiao H, Chen JK, Reynolds A, Hoog C, Paddy M, Hunter N (2012) Interplay between synaptonemal complex, homologous recombination, and centromeres during mammalian meiosis. PLoS Genet 8(6): e1002790.
54. Raman H, Zhang K, Cakir M et al (2005) Molecular characterization and mapping of ALMT1, the aluminium-tolerance gene of bread wheat (Triticum aestivum L.). Genome 8: 781-791.
55. Ross KJ, Fransz P, Jones GH (1996) A light microscope atlas of meiosis in Arabidopsis thaliana. Chromosom Res 4: 507-516.
56. Rustenholz C, Choulet F, Laugier C et al (2011) A 3, 000-loci transcript map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat. Plant Physiol 157: 1596-1608.
57. Schnable PS, Ware D, Fulton RS et al (2009) The B73 maize genome: complexity, diversity, dynamics. Science 326: 1112-1115.
58. Schramm S, Fraune J, Naumann R et al (2011) A novel mouse synaptonemal complex protein is essential for loading of central element proteins, recombination, and fertility. PLoS Genet 7(5): e1002088.
59. Sears ER (1954) The aneuploids of common wheat. Missouri Agr Exp Stn Res Bull 572: 1-58.
60. Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109: 1105-1114.
61. Song QJ, Shi JR, Singh S et al (2005) Development and mapping of microsatellite (SSR) markers in wheat. Theor Appl Genet 110: 550-560.
62. Sutka J, Galiba G, Vagujfalvi A, Gill BS, Snape JW (1999) Physical mapping of Vrn-A1 and genes on chromosome 5A of wheat using deletion line. Theor Appl Genet 99: 199-202.
63. Tanaka A, Shikazono N, Hase Y (2010) Studies on biological effects of ion beams on lethality, molecular nature of mutation, mutation rate, and spectrum of mutation phenotype for mutation breeding in higher plants. J Radiat Res 51: 223-233.
64. The International Brachypodium Initiative (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463: 763-768.
65. Tiwari VK, Riera-Lizarazu O, Gunn HL et al (2012) Endosperm tolerance of paternal aneuploidy allows radiation-hybrid mapping of the wheat D-genome and a measure of γ ray-induced chromosome breaks. PLoS ONE 7(11): e48815.
66. Tsilo TJ, Hareland GA, Chao S, Anderson JA (2011) Genetic mapping and QTL analysis of flour color and milling yield related traits using recombinant inbred lines in hard red spring wheat. Crop Sci 51: 237-246.
67. Wang S, Basten CJ, Zeng ZB (2011) Windows QTL Cartographer 2. 5. Department of Statistics, North Carolina State University, Raleigh.
68. Watanabe N, Koval SF (2003) Mapping of chlorine mutant genes on the long arm of homoeologous group 7 chromosomes in common wheat with partial deletion lines. Euphytica 129: 259-265.
69. Wenzl P, Suchánková P, Carling J et al (2010) Isolated chromosomes as a new and efficient source of DArT markers for the saturation of genetic maps. Theor Appl Genet 121: 465-474.
70. Xu SJ, Joppa LR (1995) Mechanisms and inheritance of first division restitution in hybrids of wheat, rye, and Aegilops squarrosa. Genome 38: 607-615.
71. Xu SJ, Joppa LR (2000) Hexaploid triticales from hybrids of Langdon durum D-genome substitutions with rye. Plant Breed 119: 223-226.
72. Zhirov EG, Bessarab KS, Gubanova MA (1974) Genetic studies on partial desynapsis in soft wheat. Soviet Genetics 9(1): 10-18.
73. Zhou C, Dong W, Han L et al (2012) Construction of whole genome radiation hybrid panels and map of chromosome 5A of wheat using asymmetric somatic hybridization. PLoS ONE 7(7): e40214.