Contrasting effects of landscape features on genetic structure in different geographic regions in the ornate dragon lizard, Ctenophorus ornatus

Molecular Ecology

Volumn 22, Issue 15, 2013, Pages 3904-3915

  Levy, Esther ^a   Tomkins, Joseph L ^a   Lebas, Natasha R ^a   Kennington, W Jason ^a  

^a UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

Author keywords

genetic structure; genetic variation; land clearing; landscape genetics; ornate dragon lizard

Indexed keywords

ANIMAL; ARTICLE; ECOSYSTEM; GENE FLOW; GENE POOL; GENETIC DRIFT; GENETIC VARIABILITY; GENETICS; IGUANIDAE; LAND CLEARING; LANDSCAPE GENETICS; ORNATE DRAGON LIZARD; POPULATION; REPRODUCTIVE ISOLATION;

GENETIC STRUCTURE; GENETIC VARIATION; LAND CLEARING; LANDSCAPE GENETICS; ORNATE DRAGON LIZARD;

ANIMALS; ECOSYSTEM; GENE FLOW; GENE POOL; GENETIC DRIFT; GENETIC VARIATION; IGUANAS; POPULATION; REPRODUCTIVE ISOLATION;

EID: 84880829228     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12367     Document Type: Article

References (70)

1. Adriaensen F, Chardon JP, De Blust G, et al,. (2003) The application of 'least-cost' modelling as a functional landscape model. Landscape and Urban Planning, 64, 233-247.
2. Alda F, Sastre P, De La Cruz-Cardiel PJ, Doadrio I, (2011) Population genetics of the endangered Cantabrian capercaillie in northern Spain. Animal Conservation, 14, 249-260.
3. Anderson CD, Epperson BK, Fortin MJ, et al,. (2010) Considering spatial and temporal scale in landscape-genetic studies of gene flow. Molecular Ecology, 19, 3565-3575.
4. Berry O, Tocher MD, Gleeson DM, Sarre SD, (2005) Effect of vegetation matrix on animal dispersal: genetic evidence from a study of endangered skinks. Conservation Biology, 19, 855-864.
5. Beyer HL, (2011) Geospatial Modelling Environment, 0.5.3 Beta. (software). Available at: http://www. spatialecology. com/gme.
6. Bollmer JL, Whiteman NK, Cannon MD, Bednarz JC, De Vries T, Parker PG, (2005) Population genetics of the Galapagos hawk (Buteo galapagoensis): genetic monomorphism within isolated populations. Auk, 122, 1210-1224.
7. Bradshaw SD, (1965) The comparative ecology of lizards of the genus Amphibolurus. D. Phil Thesis, University of Western Australia, Nedlands.
8. Braunisch V, Segelbacher G, Hirzel AH, (2010) Modelling functional landscape connectivity from genetic population structure: a new spatially explicit approach. Molecular Ecology, 19, 3664-3678.
9. Castellano S, Balletto E, (2002) Is the partial Mantel test inadequate? Evolution, 56, 1871-1873.
10. Castric V, Bonney F, Bernatchez L, (2001) Landscape structure and hierarchical genetic diversity in the brook charr, Salvelinus fontinalis. Evolution, 55, 1016-1028.
11. Crosby MKA, Licht LE, Fu J, (2009) The effect of habitat fragmentation on finescale population structure of wood frogs (Rana sylvatica). Conservation Genetics, 10, 1707-1718.
12. Cushman SA, Landguth EL, (2010) Spurious correlations and inference in landscape genetics. Molecular Ecology, 19, 3592-3602.
13. Dionne M, Caron F, Dodson JJ, Bernatchez L, (2008) Landscape genetics and hierarchical genetic structure in Atlantic salmon: the interaction of gene flow and local adaptation. Molecular Ecology, 17, 2382-2396.
14. Ditto AM, Frey JK, (2007) Effects of ecogeographic variables on genetic variation in montane mammals: implications for conservation in a global warming scenario. Journal of Biogeography, 34, 1136-1149.
15. Emaresi G, Pellet J, Dubey S, Hirzel AH, Fumagalli L, (2011) Landscape genetics of the Alpine newt (Mesotriton alpestris) inferred from a strip-based approach. Conservation Genetics, 12, 41-50.
16. Fischer M, Matthies D, (1998) RAPD variation in relation to population size and plant fitness in the rare Gentianella germanica (Gentianaceae). American Journal of Botany, 85, 811-819.
17. Frankham R, (1996) Relationship of genetic variation to population size in wildlife. Conservation Biology, 10, 1500-1508.
18. Funk WC, Blouin MS, Corn PS, et al,. (2005) Population structure of Columbia spotted frogs (Rana luteiventris) is strongly affected by the landscape. Molecular Ecology, 14, 483-496.
19. Goudet J, (2001) FSTAT, a program to estimate and test gene diversities and fixation indices, Version 2.9.3. Available from http://www.unil.ch/izea/ softwares/fstat.html. Updated from Goudet (1995).
20. Hauser L, Adcock GJ, Smith PJ, Bernal Ramírez JH, Carvalho GR, (2002) Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus). Proceedings of the National Academy of Sciences of the United States of America, 99, 11742-11747.
21. Hedrick PW, (2005) A standardized genetic differentiation measure. Evolution, 59, 1633-1638.
22. Hinten G, Harriss F, Rossetto M, Braverstock PR, (2003) Genetic variation and island biogeography: microsatellite and mitochondrial DNA variation in island populations of the Australian bush rat, Rattus fuscipes greyii. Conservation Genetics, 4, 759-778.
23. Hoehn M, Sarre SD, Henle K, (2007) The tales of two geckos: does dispersal prevent extinction in recently fragmented populations? Molecular Ecology, 16, 3299-3312.
24. Howeth JG, McGaugh SE, Hendrickson DA, (2008) Contrasting demographic and genetic estimates of dispersal in the endangered Coahuilan box turtle: a contemporary approach to conservation. Molecular Ecology, 17, 4209-4221.
25. IBMcorp. Released (2010) IBM SPSS Statistics for Windows, Version 19.0. IBM Corp, Armonk, New York.
26. Jarvis N, (1986) Western Australia: an Atlas of Human Endeavour. Department of Lands and Surveys, Perth, Western Australia.
27. Keyghobadi N, (2007) The genetic implications of habitat fragmentation for animals. Canadian Journal of Zoology, 85, 1049-1064.
28. Klug PE, Wisely SM, With KA, (2011) Population genetic structure and landscape connectivity of the Eastern Yellowbelly Racer (Coluber constrictor flaviventris) in the contiguous tallgrass prairie of northeastern Kansas, USA. Landscape Ecology, 26, 281-294.
29. LeBas NR, (2001) Microsatellite determination of male reproductive success in a natural population of the territorial ornate dragon lizard, Ctenophorus ornatus. Molecular Ecology, 10, 193-203.
30. LeBas NR, Spencer PB, (2000) Polymorphic microsatellite markers in the ornate dragon lizard, Ctenophorus ornatus. Molecular Ecology, 9, 365-378.
31. Lee-Yaw JA, Davidson A, Mcrae BH, Green DM, (2009) Do landscape processes predict phylogeographic patterns in the wood frog? Molecular Ecology, 18, 1863-1874.
32. Leimu R, Mutikainen P, Koricheva J, Fischer M, (2006) How general are positive relationships between plant population size, fitness and genetic variation? Journal of Ecology, 94, 942-952.
33. Levy E, Kennington WJ, LeBas NR, (2010a) Characterization of microsatellite loci for the ornate dragon lizard Ctenophorus ornatus. Conservation Genetics Resources, 2, 313-315.
34. Levy E, Kennington WJ, Tomkins JL, Lebas NR, (2010b) Land clearing reduces gene flow in the granite outcrop-dwelling lizard, Ctenophorus ornatus. Molecular Ecology, 19, 4192-4203.
35. Levy E, Kennington WJ, Tomkins JL, LeBas NR, (2012) Phylogeography and population genetic structure of the ornate dragon lizard, Ctenophorus ornatus. PLoS ONE, 7, e46351.
36. Madsen T, Shine R, Olsson M, Wittzell H, (1999) Restoration of an inbred adder population. Nature, 402, 34-35.
37. Moran GF, Hopper SD, (1983) Genetic diversity and the insular population structure of the rare granite rock species, Eucalyptus caesia Benth. Australian Journal of Botany, 31, 161-172.
38. Murphy MA, Dezanni R, Pilliod DS, Storfer A, (2010a) Landscape genetics of high mountain frog metapopulations. Molecular Ecology, 19, 3634-3649.
39. Murphy MA, Evans JS, Storfer A, (2010b) Quantifying Bufo boreas connectivity in Yellowstone National Park with landscape genetics. Ecology, 91, 252-261.
40. Murray JV, Goldizen AW, O'Leary RA, McAlpine CA, Possingham HP, Choy SL, (2009) How useful is expert opinion for predicting the distribution of a species within and beyond the region of expertise? A case study using brush-tailed rock-wallabies Petrogale penicillata. Journal of Applied Ecology, 46, 842-851.
41. Oksanen J, Blanchet FG, Kindt R, et al,. (2011) vegan: community ecology package. R package version 1.17-9. Available at http://CRAN.R-project.org/ package=vegan
42. Olsson M, (1994) Nuptial coloration in the sand lizard, Lacerta-Agilis: an intra-sexually selected cue to fighting ability. Animal Behaviour, 48, 607-613.
43. Peakall R, Smouse PE, (2006) GenAlEx 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295.
44. Peakall R, Smouse PE, (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics, 28, 2537-2539.
45. Pfenninger M, (2002) Relationship between microspatial population genetric structure and habitat heterogeneity in Pomatias elegans (O.F. Muller 1774) (Caenogastropoda, Pomatiasidae). Biological Journal of the Linnean Society, 76, 565-575.
46. Queller DC, Goodnight KF, (1989) Estimating relatedness using genetic markers. Evolution, 43, 258-275.
47. Rayfield B, Fortin MJ, Fall A, (2010) The sensitivity of least-cost habitat graphs to relative cost surface values. Landscape Ecology, 25, 519-532.
48. Rice WR, (1989) Analyzing tables of statistical tests. Evolution, 43, 223-225.
49. Rousset F, (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
50. Rousset F, (2002) Partial mantel tests: reply to Castellano and Balletto. Evolution, 56, 1874-1875.
51. Saunders DA, (1989) Changes in the avifauna of a region, district and remnant as a result of fragmentation of native vegetation: the wheatbelt of Western Australia. A case study. Biological Conservation, 50, 99-135.
52. Schmidt K, Jensen K, (2000) Genetic structure and AFLP variation of remnant populations in the rare plant Pedicularis palustris (Scrophulariaceae) and its relation to population size and reproductive components. American Journal of Botany, 87, 678-689.
53. Short Bull RA, Cushman SA, Mace R, et al,. (2011) Why replication is important in landscape genetics: American black bear in the Rocky Mountains. Molecular Ecology, 20, 1092-1107.
54. Soule ME, Mackey BG, Recher HF, et al,. (2004) The role of connectivity in Australian conservation. Pacific Conservation Biology, 10, 266-279.
55. Spear SF, Storfer A, (2008) Landscape genetic structure of coastal tailed frogs (Ascaphus truei) in protected vs. managed forests. Molecular Ecology, 17, 4642-4656.
56. Spear SF, Peterson CR, Matacq M, Storfer A, (2005) Landscape genetics of the blotched tiger salamander (Ambystoma tigrinum melanostictum). Molecular Ecology, 14, 2553-2564.
57. Spear SF, Balkenhol N, Fortin MJ, McRae BH, Scribner K, (2010) Use of resistance surfaces for landscape genetic studies: considerations for parameterization and analysis. Molecular Ecology, 19, 3576-3591.
58. Storfer A, Murphy MA, Evans JS, et al,. (2007) Putting the 'landscape' in landscape genetics. Heredity, 98, 128-142.
59. Storfer A, Murphy MA, Spear SF, Holderegger R, Waits LP, (2010) Landscape genetics: where are we now? Molecular Ecology, 19, 3496-3514.
60. Storr GM, Smith LA, Johnstone RE, (1983) Lizards of Western Australia II. Dragons and Monitors. Western Australian Museum, Perth, Western Australia.
61. Stow AJ, Sunnucks P, Briscoe DA, Gardner MG, (2001) The impact of habitat fragmentation on dispersal of Cunningham's skink (Egernia cunninghami): evidence from allelic and genotypic analyses of microsatellites. Molecular Ecology, 10, 867-878.
62. Sunnucks P, Hales DF, (1996) Numerous transposed sequences of mitochondrial cytochrome oxidase I-II in aphids of the genus Sitobion (Hemiptera: Aphididae). Molecular Biology and Evolution, 13, 510-524.
63. Templeton AR, Shaw K, Routman E, Davis SK, (1990) The genetic consequences of habitat fragmentation. Annals of the Missouri Botanical Garden, 77, 13-27.
64. Van Oosterhout C, Hutchinson WF, Wills DP, Shipley P, (2004) Micro-checker: software for identifying and correcting genotyping errors in microsattelite data. Molecular Ecology Notes, 4, 535-538.
65. Varvio SL, Chakraborty R, Nei M, (1986) Genetic-variation in subdivided populations and conservation genetics. Heredity, 57, 189-198.
66. Vergeer P, Rengelink R, Copal A, Ouborg NJ, (2003) The interacting effects of genetic variation, habitat quality and population size on performance of Succisa pratensis. Journal of Ecology, 91, 18-26.
67. Wang JL, Whitlock MC, (2003) Estimating effective population size and migration rates from genetic samples over space and time. Genetics, 163, 429-446.
68. Waples RS, Do C, (2008) LDNE: a program for estimating effective population size from data on linkage disequilibrium. Molecular Ecology Resources, 8, 753-756.
69. Waples RS, Do C, (2009) Linkage disequilibrium estimates of contemporary Ne using highly variable genetic markers: a largely untapped resource for applied conservation and evolution. Evolutionary Applications, 3, 244-262.
70. Wright S, (1943) Isolation by distance. Genetics, 28, 114-138.