Molecular Phylodynamic Analysis Indicates Lineage Displacement Occurred in Chinese Rabies Epidemics between 1949 to 2010

PLoS Neglected Tropical Diseases

Volumn 7, Issue 7, 2013, Pages

  Tao, Xiao Yan ^a   Tang, Qing ^a   Rayner, Simon ^b   Guo, Zhen Yang ^a,b   Li, Hao ^a   Lang, Shu Lin ^a   Yin, Cui Ping ^a   Han, Na ^b   Fang, Wei ^b   Adams, James ^b   Song, Miao ^a,c   Liang, Guo Dong ^a  

^a CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^b WUHAN INSTITUTE OF VIROLOGY   (China)

^c Liupanshui Vocational and Technical College   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHINA; COMPARATIVE STUDY; EPIDEMIC; GEOGRAPHIC DISTRIBUTION; HUMAN; INCIDENCE; NONHUMAN; PHYLOGENY; RABIES; SAMPLING ERROR; WILDLIFE;

EID: 84880828079     PISSN: 19352727     EISSN: 19352735     Source Type: Journal    
DOI: 10.1371/journal.pntd.0002294     Document Type: Article

References (34)

1. Nadin-Davis SA, Real LA, (2011) Molecular phylogenetics of the lyssaviruses-insights from a coalescent approach. Adv Virus Res 79: 203-238.
2. Kuzmin IV, Shi M, Orciari LA, Yager PA, Velasco-Villa A, et al. (2012) Molecular Inferences Suggest Multiple Host Shifts of Rabies Viruses from Bats to Mesocarnivores in Arizona during 2001-2009. PLoS Pathog 8: e1002786.
3. Wunner WH, Briggs DJ, (2010) Rabies in the 21 century. PLoS Negl Trop Dis 4: e591.
4. Tang YZ, Liu L, Pan MM, Wang YM, Deng GH, (2011) Evolutionary pattern of full hepatitis B virus genome during sequential nucleos(t)ide analog therapy. Antiviral Res 90: 116-125.
5. Tang X, Luo M, Zhang S, Fooks AR, Hu R, et al. (2005) Pivotal role of dogs in rabies transmission, China. Emerg Infect Dis 11: 1970-1972.
6. Zhang YZ, Xiong CL, Xiao DL, Jiang RJ, Wang ZX, et al. (2005) Human rabies in China. Emerg Infect Dis 11: 1983-1984.
7. Song M, Tang Q, Wang DM, Mo ZJ, Guo SH, et al. (2009) Epidemiological investigations of human rabies in China. BMC Infect Dis 9: 210.
8. Yin CP, Zhou H, Wu H, Tao XY, Rayner S, et al. (2012) Analysis on factors related to rabies epidemic in China from 2007-2011. Virol Sin 27: 132-143.
9. Tao XY, Tang Q, Li H, Mo ZJ, Zhang H, et al. (2009) Molecular epidemiology of rabies in Southern People's Republic of China. Emerg Infect Dis 15: 1192-1198.
10. Kuzmin IV, Tordom N (2012) Genus Lyssavirus. In: Dietzgen RD, Kuzmin IV, editors. Molecular Taxonomy, Evolution, Genomics, Ecology, Host-Vector Interactions, Cytopathology and Control: Caister Academic Press. pp.37-57.
11. Bourhy H, Kissi B, Tordo N, (1993) Molecular diversity of the Lyssavirus genus. Virology 194: 70-81.
12. Skerratt LF, Speare R, Berger L, Winsor H, (1998) Lyssaviral infection and lead poisoning in black flying foxes from Queensland. J Wildl Dis 34: 355-361.
13. Kuzmin IV, Orciari LA, Arai YT, Smith JS, Hanlon CA, et al. (2003) Bat lyssaviruses (Aravan and Khujand) from Central Asia: phylogenetic relationships according to N, P and G gene sequences. Virus Res 97: 65-79.
14. Kuzmin IV, Hughes GJ, Botvinkin AD, Orciari LA, Rupprecht CE, (2005) Phylogenetic relationships of Irkut and West Caucasian bat viruses within the Lyssavirus genus and suggested quantitative criteria based on the N gene sequence for lyssavirus genotype definition. Virus Res 111: 28-43.
15. Badrane H, Tordo N, (2001) Host switching in Lyssavirus history from the Chiroptera to the Carnivora orders. J Virol 75: 8096-8104.
16. Pybus OG, Rambaut A, (2009) Evolutionary analysis of the dynamics of viral infectious disease. Nat Rev Genet 10: 540-550.
17. Yu J, Li H, Tang Q, Rayner S, Han N, et al. (2012) The spatial and temporal dynamics of rabies in China. PLoS Negl Trop Dis 6: e1640.
18. Kissi B, Badrane H, Audry L, Lavenu A, Tordo N, et al. (1999) Dynamics of rabies virus quasispecies during serial passages in heterologous hosts. J Gen Virol 80 (Pt 8):: 2041-2050.
19. Yang Z, Swanson WJ, Vacquier VD, (2000) Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites. Mol Biol Evol 17: 1446-1455.
20. Meng S, Xu G, Wu X, Lei Y, Yan J, et al. (2010) Transmission dynamics of rabies in China over the last 40 years: 1969-2009. J Clin Virol 49: 47-52.
21. Ming P, Yan J, Rayner S, Meng S, Xu G, et al. (2010) A history estimate and evolutionary analysis of rabies virus variants in China. J Gen Virol 91: 759-764.
22. Gong W, Jiang Y, Za Y, Zeng Z, Shao M, et al. (2010) Temporal and spatial dynamics of rabies viruses in China and Southeast Asia. Virus Res 150: 111-118.
23. Lang SL, Tao XY, Guo ZY, Tang Q, Li H, et al. (2012) Molecular characterization of viral G gene in emerging and re-emerging areas of rabies in China, 2007 to 2011. Virol Sin 27: 194-203.
24. Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
25. Lemey P, Rambaut A, Drummond AJ, Suchard MA, (2009) Bayesian phylogeography finds its roots. PLoS Comput Biol 5: e1000520.
26. Grenfell BT, Pybus OG, Gog JR, Wood JL, Daly JM, et al. (2004) Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303: 327-332.
27. Biek R, Drummond AJ, Poss M, (2006) A virus reveals population structure and recent demographic history of its carnivore host. Science 311: 538-541.
28. Posada D, Crandall KA, (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
29. Drummond AJ, Ho SY, Phillips MJ, Rambaut A, (2006) Relaxed phylogenetics and dating with confidence. PLoS Biol 4: e88.
30. Bourhy H, Reynes JM, Dunham EJ, Dacheux L, Larrous F, et al. (2008) The origin and phylogeography of dog rabies virus. J Gen Virol 89: 2673-2681.
31. Guo Z, Tao X, Yin C, Han N, Yu J, et al. (2013) National Borders Effectively Halt the Spread of Rabies: The Current Rabies Epidemic in China Is Dislocated from Cases in Neighboring Countries. PLoS Negl Trop Dis 7: e2039.
32. Hampson K, Dushoff J, Bingham J, Bruckner G, Ali YH, et al. (2007) Synchronous cycles of domestic dog rabies in sub-Saharan Africa and the impact of control efforts. Proc Natl Acad Sci U S A 104: 7717-7722.
33. Talbi C, Lemey P, Suchard MA, Abdelatif E, Elharrak M, et al. (2010) Phylodynamics and human-mediated dispersal of a zoonotic virus. PLoS Pathog 6: e1001166.
34. Wang L, Wu H, Tao X, Li H, Rayner S, et al. (2013) Genetic and evolutionary characterization of RABVs from China using the phosphoprotein gene. Virol J 10: 14.