Molecular inferences suggest multiple host shifts of rabies viruses from bats to mesocarnivores in Arizona during 2001-2009

PLoS Pathogens

Volumn 8, Issue 6, 2012, Pages

  Kuzmin, Ivan V ^a   Shi, Mang ^a,b   Orciari, Lillian A ^a   Yager, Pamela A ^a   Velasco Villa, Andres ^a   Kuzmina, Natalia A ^a   Streicker, Daniel G ^c   Bergman, David L ^d   Rupprecht, Charles E ^a  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b PENNSYLVANIA STATE UNIVERSITY   (United States)

^c UNIVERSITY OF GEORGIA   (United States)

^d UNITED STATES DEPARTMENT OF AGRICULTURE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; MESSENGER RNA; VIRUS GLYCOPROTEIN; VIRUS PROTEIN;

ADAPTATION; AMINO ACID SUBSTITUTION; ARTICLE; BAT; CARNIVORE; HOST PATHOGEN INTERACTION; MAMMAL; MOLECULAR EVOLUTION; NONHUMAN; NORTH AMERICA; PHYLOGENY; RABIES VIRUS; SEQUENCE ANALYSIS; UNITED STATES; VIRUS GENE; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN; ANIMAL; ANIMAL DISEASE; CARNIVORA; CAT; CHEMISTRY; DISEASE CARRIER; FOX; GENETICS; PATHOGENICITY; RABIES; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIROLOGY;

EPTESICUS; LYSSAVIRUS; MAMMALIA; RABIES VIRUS; RHABDOVIRIDAE;

ADAPTATION, PHYSIOLOGICAL; ANIMALS; ARIZONA; CARNIVORA; CATS; CHIROPTERA; DISEASE VECTORS; FOXES; GENES, VIRAL; MEPHITIDAE; PHYLOGENY; RABIES; RABIES VIRUS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; VIRAL PROTEINS;

EID: 84864031531     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1002786     Document Type: Article

References (45)

1. Nadin-Davis SA, Real LA, (2011) Molecular phylogenetics of the lyssaviruses- insights from a coalescent approach. Adv Virus Res 79: 203-238.
2. Kuzmin IV, Rupprecht CE, (2007) Bat rabies. In: Jackson AC, Wunner WH, editors. Rabies, 2nd ed Academic Press pp. 259-307.
3. Rupprecht CE, Turmelle A, Kuzmin IV, (2011) A perspective on lyssavirus emergence and perpetuation. Curr Opin Virol 1: 662-670.
4. Badrane H, Tordo N, (2001) Host switching in lyssavirus history from the Chiroptera to the Carnivora orders. J Virol 75: 8096-8104.
5. Velasco-Villa A, Orciari LA, Souza V, Juárez-Islas V, Gomez-Sierra M, et al. (2005) Molecular epizootiology of rabies associated with terrestrial carnivores in Mexico. Virus Res 111: 13-27.
6. Dietzschold B, Wunner WH, Wiktor TJ, Lopes AD, Lafon M, et al. (1983) Characterization of an antigenic determinant of the glycoprotein that correlates with pathogenicity of rabies virus. Proc Natl Acad Sci U S A 80: 70-74.
7. Wunner WH, (2007) Rabies virus. In: Jackson AC, Wunner WH, editors. Rabies, 2nd edition Academic Press pp. 23-68.
8. Domingo E, Holland JJ, (1994) Mutation rates and rapid evolution of RNA viruses. In: Morse SS, editors. The evolutionary biology of viruses New York Raven Press pp. 161-184.
9. Holmes EC, Woelk CH, Kassis R, Bourhy H, (2002) Genetic constraints and the adaptive evolution of rabies virus in nature. Virology 292: 247-257.
10. Bourhy H, Reynes JM, Dunham EJ, Dacheux L, Larrous F, et al. (2008) The origin and phylogeography of dog rabies virus. J Gen Virol 89: 2673-2681.
11. Velasco-Villa A, Orciari LA, Juárez-Islas V, Gómez-Sierra M, Padilla-Medina I, et al. (2006) Molecular diversity of rabies viruses associated with bats in Mexico and other countries of the Americas. J Clin Microbiol 44: 1697-1710.
12. Streicker DG, Turmelle AS, Vonhof MJ, Kuzmin IV, McCracken GF, et al. (2010) Host phylogeny constrains cross-species emergence and establishment of rabies virus in bats. Science 329: 676-679.
13. Smith JS, (1988) Monoclonal antibody studies of rabies in insectivorous bats of the United States. Rev Infect Dis 10: 637-643.
14. Shankar V, Orciari LA, De Mattos C, Kuzmin IV, Pape WJ, et al. (2005) Genetic divergence of rabies viruses from bat species of Colorado, USA. Vector Borne Zoonotic Dis 5: 330-341.
15. Daoust PY, Wandeler AI, Casey GA, (1996) Cluster of rabies cases of probable bat origin among red foxes in Prince Edward Island, Canada. J Wildl Dis 32: 403-406.
16. Aréchiga-Ceballos N, Velasco-Villa A, Shi M, Flores-Chávez S, Barrón B, et al. (2010) New rabies virus variant found during an epizootic in white-nosed coatis from the Yucatan Peninsula. Epidemiol Infect 138: 1586-1589.
17. Leslie MJ, Messenger S, Rohde RE, Smith J, Cheshier R, et al. (2006) Bat-associated rabies virus in Skunks. Emerg Infect Dis 12: 1274-1277.
18. Dean DJ, Abelseth MK, Atanasiu P, (1996) The fluorescent antibody test. In: Meslin FX, Kaplan MM, Koprowski H, editors. Laboratory techniques in rabies, 4th edition Geneva World Health Organization pp. 88-93.
19. Kuzmin IV, Wu X, Tordo N, Rupprecht CE, (2008) Complete genomes of Aravan, Khujand, Irkut and West Caucasian bat viruses, with special attention to the polymerase gene and non-coding regions. Virus Res 136: 81-90.
20. Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
21. Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp 41: 95-98.
22. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
23. Martin DP, Lemey P, Lott M, Moulton V, Posada D, et al. (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26: 2462-2463.
24. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
25. Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
26. Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
27. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
28. Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
29. Delmas O, Holmes EC, Talbi C, Larrous F, Dacheux L, et al. (2008) Genomic diversity and evolution of the lyssaviruses. PLoS One 3: e2057.
30. Marston DA, McElhinney LM, Johnson N, Muller T, Conzelmann KK, et al. (2007) Comparative analysis of the full genome sequence of European bat lyssavirus type 1 and type 2 with other lyssaviruses and evidence for a conserved transcription termination and polyadenylation motif in the G-L 3′ non-translated region. J Gen Virol 88: 1302-1314.
31. Warrilow D, Smith IL, Harrower B, Smith GA, (2002) Sequence analysis of an isolate from a fatal human infection of Australian bat lyssavirus. Virology 297: 109-119.
32. Meng S, Sun Y, Wu X, Tang J, Xu G, et al. (2011) Evolutionary dynamics of rabies viruses highlights the importance of China rabies transmission in Asia. Virology 410: 403-409.
33. Nadin-Davis SA, Feng Y, Mousse D, Wandeler AI, Aris-Brosou S, (2010) Spatial and temporal dynamics of rabies virus variants in big brown bat populations across Canada: footprints of an emerging zoonosis. Mol Ecol 19: 2120-2136.
34. Blanton JD, Palmer D, Dyer J, Rupprecht CE, (2011) Rabies surveillance in the United States during 2010. J Am Vet Med Assoc 239: 773-783.
35. Blanton JD, Palmer D, Rupprecht CE, (2010) Rabies surveillance in the United States during 2009. J Am Vet Med Assoc 237: 646-657.
36. Hanlon CA, Niezgoda M, Rupprecht CE, (2007) Rabies in terrestrial animals. In: Jackson AC, Wunner WH, editors. Rabies, 2nd edition Academic Press pp. 201-258.
37. Rosatte RC, Tinline RR, Johnson DH, (2007) Rabies control in wild carnivores. In: Jackson AC, Wunner WH, editors. Rabies, 2nd edition Academic Press pp. 595-634.
38. Holmes EC, (2009) The evolutionary genetics of emerging viruses. Annu Rev Ecol Evol Syst 40: 353-372.
39. Takayama-Ito M, Ito N, Yamada K, Sugiyama M, Minamoto N, (2006) Multiple amino acids in the glycoprotein of rabies virus are responsible for pathogenicity in adult mice. Virus Res 115: 169-175.
40. Ito Y, Ito N, Saito S, Masatani T, Nakagawa K, et al. (2010) Amino acid substitutions at positions 242, 255 and 268 in rabies virus glycoprotein affect spread of viral infection. Microbiol Immunol 54: 89-97.
41. Banyard AC, Hayman D, Johnson N, McElhinney L, Fooks AR, (2011) Bats and lyssaviruses. Adv Virus Res 79: 239-289.
42. Blumberg BM, Kolakofsky D, (1983) An analytical review of defective infections of vesicular stomatitis virus. J Gen Virol 64: 1839-1847.
43. Metlin A, Paulin L, Suomalainen S, Neuvonen E, Rybakov S, et al. (2008) Characterization of Russian rabies virus vaccine strain RV-97. Virus Res 132: 242-247.
44. Faber M, Pulmanausahakul R, Nagao K, Prosniak M, Rice AB, et al. (2004) Identification of viral genomic elements responsible for rabies virus neuroinvasiveness. Proc Natl Acad Sci U S A 101: 16328-16332.
45. Johnson N, Freuling C, Marston DA, Tordo N, Fooks AR, et al. (2007) Identification of European bat lyssavirus isolates with short genomic insertions. Virus Res 128: 140-143.