Complete Genome Sequence of the First Chinese Virulent Infectious Laryngotracheitis Virus

PLoS ONE

Volumn 8, Issue 7, 2013, Pages

  Kong, Congcong ^a,b   Zhao, Yan ^a,b   Cui, Xianlan ^c   Zhang, Xiaomin ^d   Cui, Hongyu ^a,b   Xue, Mei ^a,b   Wang, Yunfeng ^a,b  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b National Engineering Research Center of Veterinary Biologics   (China)

^c DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

^d YUNNAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOPROTEIN B; GLYCOPROTEIN D; GLYCOPROTEIN L;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; AT RICH SEQUENCE; CHINESE; CONTROLLED STUDY; EMBRYO; GENE DELETION; GENE SEQUENCE; ILTOVIRUS; MUTATION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; VIRUS GENOME; VIRUS STRAIN; VIRUS VIRULENCE; AMINO ACID SUBSTITUTION; ANIMAL; CHICK EMBRYO; DNA SEQUENCE; GENE ORDER; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PATHOGENICITY; VIRAL TROPISM; VIRULENCE; VIRUS GENE;

AMINO ACID SUBSTITUTION; ANIMALS; BASE SEQUENCE; CHICK EMBRYO; GENE ORDER; GENES, VIRAL; GENOME, VIRAL; HERPESVIRUS 1, GALLID; MOLECULAR SEQUENCE DATA; MUTATION; OPEN READING FRAMES; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; VIRAL TROPISM; VIRULENCE;

EID: 84880779236     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0070154     Document Type: Article

References (43)

1. Bagust TJ, Jones RC, Guy JS, (2000) Avian infectious laryngotracheitis. Rev Sci Tech 19: 483-492.
2. Fuchs W, Veits J, Helferich D, Granzow H, Teifke JP, et al. (2007) Molecular biology of avian infectious laryngotracheitis virus. Vet Res 38: 261-279.
3. Oldoni I, Rodriguez-Avila A, Riblet S, Garcia M, (2008) Characterization of infectious laryngotracheitis virus (ILTV) isolates from commercial poultry by polymerase chain reaction and restriction fragment length polymorphism (PCR-RFLP). Avian Dis 52: 59-63.
4. Chang PC, Lee YL, Shien JH, Shieh HK, (1997) Rapid differentiation of vaccine strains and field isolates of infectious laryngotracheitis virus by restriction fragment length polymorphism of PCR products. J Virol Methods 66: 179-186.
5. Garcia M, Riblet SM, (2001) Characterization of infectious laryngotracheitis virus isolates: demonstration of viral subpopulations within vaccine preparations. Avian Dis 45: 558-566.
6. Graham DA, McLaren IE, Calvert V, Torrens D, Meehan BM, (2000) RFLP analysis of recent Northern Ireland isolates of infectious laryngotracheitis virus: comparison with vaccine virus and field isolates from England, Scotland and the Republic of Ireland. Avian Pathol 29: 57-62.
7. Lee SW, Markham PF, Markham JF, Petermann I, Noormohammadi AH, et al. (2011) First complete genome sequence of infectious laryngotracheitis virus. BMC Genomics 12: 197.
8. Lee SW, Devlin JM, Markham JF, Noormohammadi AH, Browning GF, et al. (2011) Comparative analysis of the complete genome sequences of two Australian origin live attenuated vaccines of infectious laryngotracheitis virus. Vaccine 29: 9583-9587.
9. Chandra YG, Lee J, Kong BW, (2012) Genome sequence comparison of two United States live attenuated vaccines of infectious laryngotracheitis virus (ILTV). Virus Genes 44: 470-474.
10. Spatz SJ, Volkening JD, Keeler CL, Kutish GF, Riblet SM, et al. (2012) Comparative full genome analysis of four infectious laryngotracheitis virus (Gallid herpesvirus-1) virulent isolates from the United States. Virus Genes 44: 273-285.
11. Lee SW, Markham PF, Coppo MJC, Legione AR, Markham JF, et al. (2012) Attenuated Vaccines Can Recombine to Form Virulent Field Viruses. Science 337: 188-188.
12. Lee SW, Devlin JM, Markham JF, Noormohammadi AH, Browning GF, et al. (2013) Phylogenetic and Molecular Epidemiological Studies Reveal Evidence of Multiple Past Recombination Events between Infectious Laryngotracheitis Viruses. PLoS ONE 8: e55121 doi:55110.51371/journal.pone.0055121.
13. Thureen DR, Keeler CL Jr, (2006) Psittacid herpesvirus 1 and infectious laryngotracheitis virus: Comparative genome sequence analysis of two avian alphaherpesviruses. J Virol 80: 7863-7872.
14. Fuchs W, Mettenleiter TC, (1996) DNA sequence and transcriptional analysis of the UL1 to UL5 gene cluster of infectious laryngotracheitis virus. J Gen Virol 77 (Pt 9): 2221-2229.
15. Goldenberger D, Perschil I, Ritzler M, Altwegg M, (1995) A simple "universal" DNA extraction procedure using SDS and proteinase K is compatible with direct PCR amplification. PCR Methods Appl 4: 368-370.
16. Antal Z, Rascle C, Fevre M, Bruel C, (2004) Single oligonucleotide nested PCR: a rapid method for the isolation of genes and their flanking regions from expressed sequence tags. Curr Genet 46: 240-246.
17. Rice P, Longden I, Bleasby A, (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
18. Johnson MA, Prideaux CT, Kongsuwan K, Sheppard M, Fahey KJ, (1991) Gallid herpesvirus 1 (infectious laryngotracheitis virus): cloning and physical maps of the SA-2 strain. Arch Virol 119: 181-198.
19. Leib DA, Bradbury JM, Hart CA, McCarthy K, (1987) Genome isomerism in two alphaherpesviruses: Herpesvirus saimiri-1 (Herpesvirus tamarinus) and avian infectious laryngotracheitis virus. Brief report. Arch Virol 93: 287-294.
20. Griffin AM, (1991) The nucleotide sequence of the glycoprotein gB gene of infectious laryngotracheitis virus: analysis and evolutionary relationship to the homologous gene from other herpesviruses. J Gen Virol 72 (Pt 2): 393-398.
21. Ben-Porat T, Tokazewski SA, (1977) Replication of herpesvirus DNA. II. Sedimentation characteristics of newly synthesized DNA. Virology 79: 292-301.
22. Guy JS, Barnes HJ, Smith L, (1991) Increased virulence of modified-live infectious laryngotracheitis vaccine virus following bird-to-bird passage. Avian Dis 35: 348-355.
23. Hughes CS, Williams RA, Gaskell RM, Jordan FT, Bradbury JM, et al. (1991) Latency and reactivation of infectious laryngotracheitis vaccine virus. Arch Virol 121: 213-218.
24. Godowski PJ, Knipe DM, (1986) Transcriptional control of herpesvirus gene expression: gene functions required for positive and negative regulation. Proc Natl Acad Sci U S A 83: 256-260.
25. Watson RJ, Clements JB, (1980) A herpes simplex virus type 1 function continuously required for early and late virus RNA synthesis. Nature 285: 329-330.
26. Wagner LM, Lester JT, Sivrich FL, DeLuca NA, (2012) The N terminus and C terminus of herpes simplex virus 1 ICP4 cooperate to activate viral gene expression. J Virol 86: 6862-6874.
27. Huang W, Xie P, Xu M, Li P, Zao G, (2011) The influence of stress factors on the reactivation of latent herpes simplex virus type 1 in infected mice. Cell Biochem Biophys 61: 115-122.
28. Wang J, Hoper D, Beer M, Osterrieder N, (2011) Complete genome sequence of virulent duck enteritis virus (DEV) strain 2085 and comparison with genome sequences of virulent and attenuated DEV strains. Virus Res 160: 316-325.
29. Williams RK, Straus SE, (1997) Specificity and affinity of binding of herpes simplex virus type 2 glycoprotein B to glycosaminoglycans. J Virol 71: 1375-1380.
30. Bender FC, Whitbeck JC, Lou H, Cohen GH, Eisenberg RJ, (2005) Herpes simplex virus glycoprotein B binds to cell surfaces independently of heparan sulfate and blocks virus entry. J Virol 79: 11588-11597.
31. Mardberg K, Nystrom K, Tarp MA, Trybala E, Clausen H, et al. (2004) Basic amino acids as modulators of an O-linked glycosylation signal of the herpes simplex virus type 1 glycoprotein gC: functional roles in viral infectivity. Glycobiology 14: 571-581.
32. Adamiak B, Trybala E, Mardberg K, Johansson M, Liljeqvist JA, et al. (2010) Human antibodies to herpes simplex virus type 1 glycoprotein C are neutralizing and target the heparan sulfate-binding domain. Virology 400: 197-206.
33. Whitbeck JC, Peng C, Lou H, Xu R, Willis SH, et al. (1997) Glycoprotein D of herpes simplex virus (HSV) binds directly to HVEM, a member of the tumor necrosis factor receptor superfamily and a mediator of HSV entry. J Virol 71: 6083-6093.
34. Whalley JM, Ruitenberg KM, Sullivan K, Seshadri L, Hansen K, et al. (2007) Host cell tropism of equine herpesviruses: glycoprotein D of EHV-1 enables EHV-4 to infect a non-permissive cell line. Arch Virol 152: 717-725.
35. Westra DF, Glazenburg KL, Harmsen MC, Tiran A, Jan Scheffer A, et al. (1997) Glycoprotein H of herpes simplex virus type 1 requires glycoprotein L for transport to the surfaces of insect cells. J Virol 71: 2285-2291.
36. Chen J, Jardetzky TS, Longnecker R, (2013) The large groove found in the gH/gL structure is an important functional domain for Epstein-Barr virus fusion. J Virol. 87(7): 3620-3627.
37. Heldwein EE, Krummenacher C, (2008) Entry of herpesviruses into mammalian cells. Cell Mol Life Sci 65: 1653-1668.
38. Uchida H, Chan J, Goins WF, Grandi P, Kumagai I, et al. (2010) A double mutation in glycoprotein gB compensates for ineffective gD-dependent initiation of herpes simplex virus type 1 infection. J Virol 84: 12200-12209.
39. Uchida H, Chan J, Shrivastava I, Reinhart B, Grandi P, et al. (2013) Novel Mutations in gB and gH Circumvent the Requirement for Known gD Receptors in Herpes Simplex Virus 1 Entry and Cell-to-Cell Spread. J Virol 87: 1430-1442.
40. Ziemann K, Mettenleiter TC, Fuchs W, (1998) Gene arrangement within the unique long genome region of infectious laryngotracheitis virus is distinct from that of other alphaherpesviruses. J Virol 72: 847-852.
41. Lockshon D, Galloway DA, (1986) Cloning and characterization of oriL2, a large palindromic DNA replication origin of herpes simplex virus type 2. J Virol 58: 513-521.
42. Igarashi K, Fawl R, Roller RJ, Roizman B, (1993) Construction and properties of a recombinant herpes simplex virus 1 lacking both S-component origins of DNA synthesis. J Virol 67: 2123-2132.
43. Polvino-Bodnar M, Orberg PK, Schaffer PA, (1987) Herpes simplex virus type 1 oriL is not required for virus replication or for the establishment and reactivation of latent infection in mice. J Virol 61: 3528-3535.