Long-term stability of human genomic and human papillomavirus DNA stored in BD surePath and hologic preservCyt liquid-based cytology media

Journal of Clinical Microbiology

Volumn 51, Issue 8, 2013, Pages 2702-2706

  Agreda, Patricia M ^a   Beitman, Gerard H ^a   Gutierrez, Erin C ^a   Harris, James M ^a   Koch, Kristopher R ^a   LaViers, William D ^a   Leitch, Sharon V ^a   Maus, Courtney E ^a   McMillian, Ray A ^a   Nussbaumer, William A ^a   Palmer, Marcus L R ^a   Porter, Michael J ^a   Richart, Gregory A ^a   Schwab, Ryan J ^a   Vaughan, Laurence M ^a  

^a BD Diagnostics   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA;

ANALYSIS OF VARIANCE; ARTICLE; CONTROLLED STUDY; CROSS LINKING; CULTURE MEDIUM; CYTOLOGY; DNA DEGRADATION; DNA EXTRACTION; DNA ISOLATION; GEL ELECTROPHORESIS; GENE AMPLIFICATION; GENE SEQUENCE; HARVESTING; LIMIT OF DETECTION; NONHUMAN; POLYMERASE CHAIN REACTION; PRESERVATION; PRIORITY JOURNAL; VIRUS DETECTION; VIRUS GENOME; WART VIRUS;

CULTURE MEDIA; CYTOLOGICAL TECHNIQUES; DNA, VIRAL; HUMANS; PAPILLOMAVIRIDAE; REFRIGERATION; SPECIMEN HANDLING; TIME FACTORS; VIROLOGY;

EID: 84880609942     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00759-13     Document Type: Article

References (27)

1. Saslow D, Solomon D, Lawson HW, Killackey M, Kulasingam SL, Cain J, Garcia FA, Moriarty AT, Waxman AG, Wilbur DC, Wentzensen N, Downs LS, Jr, Spitzer M, Moscicki AB, Franco EL, Stoler MH, Schiffman M, Castle PE, Myers ER, American Cancer Society, American Society for Colposcopy and Cervical Pathology, American Society for Clinical Pathology. 2012. American Cancer Society, American Society for Colposcopy and Cervical Pathology, and American Society for Clinical Pathology screening guidelines for the prevention and early detection of cervical cancer. Am. J. Clin. Pathol. 137:516-542.
2. Rijkaart DC, Berkhof J, van Kemenade FJ, Coupe VM, Hesselink AT, Rozendaal L, Heideman DA, Verheijen RH, Bulk S, Verweij WM, Snijders PJ, Meijer CJ. 2012. Evaluation of 14 triage strategies for HPV DNA-positive women in population-based cervical screening. Int. J. Cancer 130:602-610.
3. Becton Dickinson. 2011. BD SurePath collection product insert (for use with the PREPSTAIN system). REF 490522. Becton Dickinson, Franklin Lakes, NJ.
4. Hologic Inc. 2011. The ThinPrep® 2000 system instructions for use. MAN-02060-002 Rev. 001. Hologic Inc, Bedford, MA.
5. Steinau M, Patel SS, Unger ER. 2011. Efficient DNA extraction for HPV genotyping in formalin-fixed, paraffin-embedded tissues. J. Mol. Diagn. 13:377-381.
6. Keegan H, Boland C, Malkin A, Griffin M, Ryan F, Lambkin H. 2005. Comparison of DNA extraction from cervical cells collected in PreservCyt solution for the amplification of Chlamydia trachomatis. Cytopathology 16:82-87.
7. Castle PE, Solomon D, Hildesheim A, Herrero R, Bratti MC, Sherman ME, Rodriguez AC, Alfaro M, Hutchinson ML, Dunn ST, Kuypers J, Schiffman M. 2003. Stability of archived liquid-based cervical cytologic specimens. Cancer 99:89-96.
8. Powell N, Smith K, Fiander A. 2006. Recovery of human papillomavirus nucleic acids from liquid-based cytology media. J. Virol. Methods 137:58-62.
9. Negri G, Rigo B, Vittadello F, Egarter-Vigl E, Mian C. 2004. Human papillomavirus typing with hybrid capture II on archived liquid-based cytologic specimens: is HPV typing always reproducible? Am. J. Clin. Pathol. 122:90-93.
10. Castle PE, Hildesheim A, Schiffman M, Gaydos CA, Cullen A, Herrero R, Bratti MC, Freer E. 2003. Stability of archived liquid-based cytologic specimens. Cancer 99:320-322.
11. Becton Dickinson. 2011. BD SurePath™ preservative fluid material safety data sheet. Catalog number 490527. Becton Dickinson, Franklin Lakes, NJ.
12. Dryer RL, Covey LR. 2006. Use of chromatin immunoprecipitation (ChIP) to detect transcription factor binding to highly homologous promoters in chromatin isolated from unstimulated and activated primary human B cells. Biol. Proced. Online 8:44-54.
13. Koon HE, Loreille OM, Covington AD, Christensen AF, Parsons TJ, Collins MJ. 2008. Diagnosing post-mortem treatments which inhibit DNA amplification from US MIAs buried at the Punchbowl. Forensic Sci. Int. 178:171-177.
14. Campos PF, Gilbert TM. 2012. DNA extraction from formalin-fixed material. Methods Mol. Biol. 840:81-85.
15. Duval K, Aubin RA, Elliott J, Gorn-Hondermann I, Birnboim HC, Jonker D, Fourney RM, Fregeau CJ. 2010. Optimized manual and automated recovery of amplifiable DNA from tissues preserved in buffered formalin and alcohol-based fixative. Forensic Sci. Int. Genet. 4:80-88.
16. Kotorashvili A, Ramnauth A, Liu C, Lin J, Ye K, Kim R, Hazan R, Rohan T, Fineberg S, Loudig O. 2012. Effective DNA/RNA co-extraction for analysis of microRNAs, mRNAs, and genomic DNA from formalinfixed paraffin-embedded specimens. PLoS One 7:e34683. doi:10.1371/journal.pone.0034683.
17. Cuzick J, Cadman L, Mesher D, Austin J, Ashdown-Barr L, Ho L, Terry G, Liddle S, Wright C, Lyons D, Szarewski A. 2013. Comparing the performance of six human papillomavirus tests in a screening population. Br. J. Cancer 108:908-913.
18. Castle PE, Gutierrez EC, Leitch SV, Maus CE, McMillian RA, Nussbaumer WA, Vaughan LM, Wheeler CM, Gravitt PE, Schiffman M. 2011. Evaluation of a new DNA test for detection of carcinogenic human papillomavirus. J. Clin. Microbiol. 49:3029-3032.
19. Szarewski A, Mesher D, Cadman L, Austin J, Ashdown-Barr L, Ho L, Terry G, Liddle S, Young M, Stoler M, McCarthy J, Wright C, Bergeron C, Soutter WP, Lyons D, Cuzick J. 2012. Comparison of seven tests for high-grade cervical intraepithelial neoplasia in women with abnormal smears: the Predictors 2 study. J. Clin. Microbiol. 50:1867-1873.
20. Siebers AG, van der Laak JA, Huberts-Manders R, Vedder JE, Bulten J. 19 June 2012. Accurate assessment of cell density in low cellular liquidbased cervical cytology. Cytopathology doi:10.1111/j.1365-2303.2012.00990.x.
21. Chen G, Kobayashi L, Nazarenko I. 2007. Effect of sample aliquot size on the limit of detection and reproducibility of clinical assays. Clin. Chem. 53:1962-1965.
22. Lu K, Ye W, Zhou L, Collins LB, Chen X, Gold A, Ball LM, Swenberg JA. 2010. Structural characterization of formaldehyde-induced crosslinks between amino acids and deoxynucleosides and their oligomers. J. Am. Chem. Soc. 132:3388-3399.
23. Mostegl MM, Richter B, Dinhopl N, Weissenbock H. 2011. Influence of prolonged formalin fixation of tissue samples on the sensitivity of chromogenic in situ hybridization. J. Vet. Diagn. Invest. 23:1212-1216.
24. Nocker A, Camper AK. 2006. Selective removal of DNA from dead cells of mixed bacterial communities by use of ethidium monoazide. Appl. Environ. Microbiol. 72:1997-2004.
25. Tarkowski TA, Rajeevan MS, Lee DR, Unger ER. 2001. Improved detection of viral RNA isolated from liquid-based cytology samples. Mol. Diagn. 6:125-130.
26. Joseph A, Gnanapragasam VJ. 2011. Laser-capture microdissection and transcriptional profiling in archival FFPE tissue in prostate cancer. Methods Mol. Biol. 755:291-300.
27. Arbyn M, Andersson K, Bergeron C, Bogers JP, von Knebel-Doebertitz M, Dillner J. 2011. Cervical cytology biobanks as a resource for molecular epidemiology. Methods Mol. Biol. 675:279-298.