-
1
-
-
33947402733
-
A gene cluster involved in degradation of substituted salicylates via ortho cleavage in Pseudomonas sp. strain MT1 encodes enzymes specifically adapted for transformation of 4-methylcatechol and 3-methylmuconate
-
Camara B, Bielecki P, Kaminski F, dos Santos VM, Plumeier I, Nikodem P & Pieper DH (2007) A gene cluster involved in degradation of substituted salicylates via ortho cleavage in Pseudomonas sp. strain MT1 encodes enzymes specifically adapted for transformation of 4-methylcatechol and 3-methylmuconate. J Bacteriol 189: 1664-1674.
-
(2007)
J Bacteriol
, vol.189
, pp. 1664-1674
-
-
Camara, B.1
Bielecki, P.2
Kaminski, F.3
dos Santos, V.M.4
Plumeier, I.5
Nikodem, P.6
Pieper, D.H.7
-
2
-
-
84860490976
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
Caspi R, Altman T, Dreher K et al. (2012) The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res 40: D742-D753.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Caspi, R.1
Altman, T.2
Dreher, K.3
-
3
-
-
33646184857
-
A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth
-
Constantinidou C, Hobman JL, Griffiths L, Patel MD, Penn CW, Cole JA & Overton TW (2006) A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth. J Biol Chem 281: 4802-4815.
-
(2006)
J Biol Chem
, vol.281
, pp. 4802-4815
-
-
Constantinidou, C.1
Hobman, J.L.2
Griffiths, L.3
Patel, M.D.4
Penn, C.W.5
Cole, J.A.6
Overton, T.W.7
-
4
-
-
77249139318
-
Machine learning methods for metabolic pathway prediction
-
Dale JM, Popescu L & Karp PD (2010) Machine learning methods for metabolic pathway prediction. BMC Bioinformatics 11: 15.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 15
-
-
Dale, J.M.1
Popescu, L.2
Karp, P.D.3
-
5
-
-
0031967070
-
A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2
-
Fuenmayor SL, Wild M, Boyes AL & Williams PA (1998) A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2. J Bacteriol 180: 2522-2530.
-
(1998)
J Bacteriol
, vol.180
, pp. 2522-2530
-
-
Fuenmayor, S.L.1
Wild, M.2
Boyes, A.L.3
Williams, P.A.4
-
6
-
-
1642338888
-
Novel pathway of salicylate degradation by Streptomyces sp. strain WA46
-
Ishiyama D, Vujaklija D & Davies J (2004) Novel pathway of salicylate degradation by Streptomyces sp. strain WA46. Appl Environ Microbiol 70: 1297-1306.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1297-1306
-
-
Ishiyama, D.1
Vujaklija, D.2
Davies, J.3
-
7
-
-
77952954602
-
Novel metabolic pathway for salicylate biodegradation via phenol in yeast Trichosporon moniliiforme
-
Iwasaki Y, Gunji H, Kino K, Hattori T, Ishii Y & Kirimura K (2010) Novel metabolic pathway for salicylate biodegradation via phenol in yeast Trichosporon moniliiforme. Biodegradation 21: 557-564.
-
(2010)
Biodegradation
, vol.21
, pp. 557-564
-
-
Iwasaki, Y.1
Gunji, H.2
Kino, K.3
Hattori, T.4
Ishii, Y.5
Kirimura, K.6
-
8
-
-
0037805576
-
The KEGG database
-
discussion 101-103, 119-128, 244-152.
-
Kanehisa M (2002) The KEGG database. Novartis Found Symp 247: 91-101; discussion 101-103, 119-128, 244-152.
-
(2002)
Novartis Found Symp
, vol.247
, pp. 91-101
-
-
Kanehisa, M.1
-
9
-
-
75849133666
-
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
-
Karp PD, Paley SM, Krummenacker M et al. (2010) Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. Brief Bioinform 11: 40-79.
-
(2010)
Brief Bioinform
, vol.11
, pp. 40-79
-
-
Karp, P.D.1
Paley, S.M.2
Krummenacker, M.3
-
10
-
-
24044469030
-
Querying and computing with BioCyc databases
-
Krummenacker M, Paley S, Mueller L, Yan T & Karp PD (2005) Querying and computing with BioCyc databases. Bioinformatics 21: 3454-3455.
-
(2005)
Bioinformatics
, vol.21
, pp. 3454-3455
-
-
Krummenacker, M.1
Paley, S.2
Mueller, L.3
Yan, T.4
Karp, P.D.5
-
11
-
-
84859821563
-
UniPathway: a resource for the exploration and annotation of metabolic pathways
-
Morgat A, Coissac E, Coudert E et al. (2012) UniPathway: a resource for the exploration and annotation of metabolic pathways. Nucleic Acids Res 40: D761-D769.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Morgat, A.1
Coissac, E.2
Coudert, E.3
-
12
-
-
0036086784
-
Evaluation of computational metabolic-pathway predictions for H. pylori
-
Paley SM & Karp PD (2002) Evaluation of computational metabolic-pathway predictions for H. pylori. Bioinformatics 18: 715-724.
-
(2002)
Bioinformatics
, vol.18
, pp. 715-724
-
-
Paley, S.M.1
Karp, P.D.2
-
13
-
-
0035826779
-
The P450-1 gene of Gibberella fujikuroi encodes a multifunctional enzyme in gibberellin biosynthesis
-
Rojas MC, Hedden P, Gaskin P & Tudzynski B (2001) The P450-1 gene of Gibberella fujikuroi encodes a multifunctional enzyme in gibberellin biosynthesis. P Natl Acad Sci USA 98: 5838-5843.
-
(2001)
P Natl Acad Sci USA
, vol.98
, pp. 5838-5843
-
-
Rojas, M.C.1
Hedden, P.2
Gaskin, P.3
Tudzynski, B.4
-
14
-
-
0023447129
-
Pathway of acetate assimilation in autotrophic and heterotrophic methanococci
-
Shieh JS & Whitman WB (1987) Pathway of acetate assimilation in autotrophic and heterotrophic methanococci. J Bacteriol 169: 5327-5329.
-
(1987)
J Bacteriol
, vol.169
, pp. 5327-5329
-
-
Shieh, J.S.1
Whitman, W.B.2
-
15
-
-
0016347924
-
The carbon assimilation pathways of Methylococcus capsulatus, Pseudomonas methanica and Methylosinus trichosporium (OB3B) during growth on methane
-
Strom T, Ferenci T & Quayle JR (1974) The carbon assimilation pathways of Methylococcus capsulatus, Pseudomonas methanica and Methylosinus trichosporium (OB3B) during growth on methane. Biochem J 144: 465-476.
-
(1974)
Biochem J
, vol.144
, pp. 465-476
-
-
Strom, T.1
Ferenci, T.2
Quayle, J.R.3
-
16
-
-
0035167509
-
nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism
-
Zhou NY, Fuenmayor SL & Williams PA (2001) nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism. J Bacteriol 183: 700-708.
-
(2001)
J Bacteriol
, vol.183
, pp. 700-708
-
-
Zhou, N.Y.1
Fuenmayor, S.L.2
Williams, P.A.3
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