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Volumn 299, Issue 7, 2013, Pages 1387-1393

Discovery and experimental analysis of microsatellites in an oil woody plant Camellia chekiangoleosa

Author keywords

Camellia; Microsatellites; Pyrosequencing; Sequence assembly

Indexed keywords

CAMELLIA; CAMELLIA CHEKIANGOLEOSA;

EID: 84880574449     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-013-0814-x     Document Type: Article
Times cited : (15)

References (34)
  • 1
    • 0033782605 scopus 로고    scopus 로고
    • Computational and experimental characterization of physically clustered simple sequence repeats in plants
    • Cardle L, Ramsay L, Milbourne D, Macaulay M, Marshall D (2000) Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics 156: 847-854.
    • (2000) Genetics , vol.156 , pp. 847-854
    • Cardle, L.1    Ramsay, L.2    Milbourne, D.3    Macaulay, M.4    Marshall, D.5
  • 6
    • 44449154843 scopus 로고    scopus 로고
    • Estimation of the genome size of tea (Camellia sinensis) camellia (C. japonica) and their interspecific hybrids by flow cytometry
    • Junichi T, Fumiya T, Noriko H, Satoshi Y (2006) Estimation of the genome size of tea (Camellia sinensis) camellia (C. japonica) and their interspecific hybrids by flow cytometry. Chagyo Kenkyu Hokoku 101: 1-7.
    • (2006) Chagyo Kenkyu Hokoku , vol.101 , pp. 1-7
    • Junichi, T.1    Fumiya, T.2    Noriko, H.3    Satoshi, Y.4
  • 7
    • 0034946803 scopus 로고    scopus 로고
    • Differential distribution of simple sequence repeats in eukaryotic genome sequences
    • Katti MV, Ranjekar PK, Gupta VS (2001) Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol 18: 1161-1167.
    • (2001) Mol Biol Evol , vol.18 , pp. 1161-1167
    • Katti, M.V.1    Ranjekar, P.K.2    Gupta, V.S.3
  • 8
    • 34249009076 scopus 로고    scopus 로고
    • Detecting microsatellites within genomes: significant variation among algorithms
    • Leclercq S, Rivals E, Jarne P (2007) Detecting microsatellites within genomes: significant variation among algorithms. BMC Bioinformatics 8: 125.
    • (2007) BMC Bioinformatics , vol.8 , pp. 125
    • Leclercq, S.1    Rivals, E.2    Jarne, P.3
  • 9
    • 1542349036 scopus 로고    scopus 로고
    • Characterization and molecular genetic mapping of microsatellite loci in pepper
    • Lee JM, Nahm SH, Kim YM, Kim BD (2004) Characterization and molecular genetic mapping of microsatellite loci in pepper. Theor Appl Genet 108: 619-627.
    • (2004) Theor Appl Genet , vol.108 , pp. 619-627
    • Lee, J.M.1    Nahm, S.H.2    Kim, Y.M.3    Kim, B.D.4
  • 10
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: a major mechanism for DNA sequence evolution
    • Levinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4: 203-221.
    • (1987) Mol Biol Evol , vol.4 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 11
    • 84878317534 scopus 로고    scopus 로고
    • New advance in karyotype studies of genus Camellia
    • Li GT (2001) New advance in karyotype studies of genus Camellia. Chin Wild Plant Resour 20: 9-14.
    • (2001) Chin Wild Plant Resour , vol.20 , pp. 9-14
    • Li, G.T.1
  • 12
    • 34648836296 scopus 로고    scopus 로고
    • Map and analysis of microsatellites in genome of Populus: the first sequenced perennial plant
    • Li SX, Yin TM (2007) Map and analysis of microsatellites in genome of Populus: the first sequenced perennial plant. Sci China C Life Sci 50: 690-699.
    • (2007) Sci China C Life Sci , vol.50 , pp. 690-699
    • Li, S.X.1    Yin, T.M.2
  • 13
    • 78650739705 scopus 로고    scopus 로고
    • Characterization of microsatellites in the coding regions of the Populus genome
    • Li SX, Yin TM, Wang MX, Tuskan GA (2011) Characterization of microsatellites in the coding regions of the Populus genome. Mol Breeding 27: 59-66.
    • (2011) Mol Breeding , vol.27 , pp. 59-66
    • Li, S.X.1    Yin, T.M.2    Wang, M.X.3    Tuskan, G.A.4
  • 14
    • 38349101340 scopus 로고    scopus 로고
    • Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
    • Macas J, Neumann P, Navrátilová A (2007) Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula. BMC Genomics 8: 427.
    • (2007) BMC Genomics , vol.8 , pp. 427
    • Macas, J.1    Neumann, P.2    Navrátilová, A.3
  • 16
    • 77957126058 scopus 로고    scopus 로고
    • Genetic diversity in European chestnut populations by means of genomic and genic microsatellite markers
    • Martin MA, Mattioni C, Cherubini M, Taurchini D, Villani F (2010) Genetic diversity in European chestnut populations by means of genomic and genic microsatellite markers. Tree Genetics Genomes 6: 735-744.
    • (2010) Tree Genetics Genomes , vol.6 , pp. 735-744
    • Martin, M.A.1    Mattioni, C.2    Cherubini, M.3    Taurchini, D.4    Villani, F.5
  • 17
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with non repetitive DNA in plant genomes
    • Morgante M, Hanafey M, Powell W (2002) Microsatellites are preferentially associated with non repetitive DNA in plant genomes. Nature Genet 30: 194-200.
    • (2002) Nature Genet , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 18
    • 0038192321 scopus 로고    scopus 로고
    • Microsatellite DNA and RAPD fingerprinting identification and genetic relationships of hybrid poplar (Populus × canadensis) cultivars
    • Rajora O, Rahman M (2003) Microsatellite DNA and RAPD fingerprinting identification and genetic relationships of hybrid poplar (Populus × canadensis) cultivars. Theor Appl Genet 106: 470-477.
    • (2003) Theor Appl Genet , vol.106 , pp. 470-477
    • Rajora, O.1    Rahman, M.2
  • 20
    • 0032540905 scopus 로고    scopus 로고
    • A sequencing method based on real-time pyrophosphate
    • Ronaghi M, Uhlén M, Nyrén P (1998) A sequencing method based on real-time pyrophosphate. Science 281: 363-365.
    • (1998) Science , vol.281 , pp. 363-365
    • Ronaghi, M.1    Uhlén, M.2    Nyrén, P.3
  • 21
    • 0035706327 scopus 로고    scopus 로고
    • Genealogical inference of closely related species based on microsatellites
    • Schlötterer C (2001) Genealogical inference of closely related species based on microsatellites. Genet Res 78: 209-212.
    • (2001) Genet Res , vol.78 , pp. 209-212
    • Schlötterer, C.1
  • 22
    • 79959358444 scopus 로고    scopus 로고
    • Genome-wide distribution and organization of microsatellites in plants: an insight into marker development in Brachypodium
    • doi:10.1371/journal.pone.0021298
    • Sonah H, Deshmukh RK, Sharma A, Singh VP, Gupta DK, Gacche RN, Rana JC, Singh NK, Sharma TR (2011) Genome-wide distribution and organization of microsatellites in plants: an insight into marker development in Brachypodium. PLoS One 6(6): e21298. doi: 10. 1371/journal. pone. 0021298.
    • (2011) PLoS One , vol.6 , Issue.6
    • Sonah, H.1    Deshmukh, R.K.2    Sharma, A.3    Singh, V.P.4    Gupta, D.K.5    Gacche, R.N.6    Rana, J.C.7    Singh, N.K.8    Sharma, T.R.9
  • 23
    • 34250789278 scopus 로고    scopus 로고
    • Global repeat discovery and estimation of genomic copy number in a large complex genome using a high-throughput 454 sequence survey
    • Swaminathan K, Varala K, Hudson ME (2007) Global repeat discovery and estimation of genomic copy number in a large complex genome using a high-throughput 454 sequence survey. BMC Genomics 8: 132.
    • (2007) BMC Genomics , vol.8 , pp. 132
    • Swaminathan, K.1    Varala, K.2    Hudson, M.E.3
  • 25
    • 72149107095 scopus 로고    scopus 로고
    • Genetic diversity and structure among Iranian tall fescue populations based on genomic-SSR and EST-SSR marker analysis
    • Tehrani MS, Mardi M, Sahebi J, Catalán P, Díaz-Pérez A (2009) Genetic diversity and structure among Iranian tall fescue populations based on genomic-SSR and EST-SSR marker analysis. Plant Syst Evol 282: 57-70.
    • (2009) Plant Syst Evol , vol.282 , pp. 57-70
    • Tehrani, M.S.1    Mardi, M.2    Sahebi, J.3    Catalán, P.4    Díaz-Pérez, A.5
  • 26
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency length variation transposon associations and genetic marker potential
    • Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency length variation transposon associations and genetic marker potential. Genome Res 11: 1441-1452.
    • (2001) Genome Res , vol.11 , pp. 1441-1452
    • Temnykh, S.1    DeClerck, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.6
  • 27
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes survey and analysis
    • Tóth G, Gáspári Z, Jurka J (2000) Microsatellites in different eukaryotic genomes survey and analysis. Genome Res 10: 967-981.
    • (2000) Genome Res , vol.10 , pp. 967-981
    • Tóth, G.1    Gáspári, Z.2    Jurka, J.3
  • 30
    • 0025157834 scopus 로고
    • Informativeness of human (dC-dA)n. (dG-dT)n polymorphisms
    • Weber JL (1990) Informativeness of human (dC-dA)n. (dG-dT)n polymorphisms. Genomics 7: 524-530.
    • (1990) Genomics , vol.7 , pp. 524-530
    • Weber, J.L.1
  • 32
    • 0037946978 scopus 로고    scopus 로고
    • Microsatellite analysis of genetic diversity in four populations of Populus tremuloides in Quebec
    • Wyman J, Bruneau A, Tremblay MF (2003) Microsatellite analysis of genetic diversity in four populations of Populus tremuloides in Quebec. Can J Bot 81: 360-367.
    • (2003) Can J Bot , vol.81 , pp. 360-367
    • Wyman, J.1    Bruneau, A.2    Tremblay, M.F.3
  • 33
    • 4344706400 scopus 로고    scopus 로고
    • Large-scale heterospecific segregation distortion in Populus revealed by a dense genetic map
    • Yin TM, DiFazio SP, Gunter LE, Riemenschneider D, Tuskan GA (2004) Large-scale heterospecific segregation distortion in Populus revealed by a dense genetic map. Theor Appl Genet 109: 451-463.
    • (2004) Theor Appl Genet , vol.109 , pp. 451-463
    • Yin, T.M.1    DiFazio, S.P.2    Gunter, L.E.3    Riemenschneider, D.4    Tuskan, G.A.5
  • 34
    • 84880610832 scopus 로고
    • The preliminary study on size and variation of pollens and on chromosome numbers of Camellia spp
    • Zhuang RL, Dong RX (1984) The preliminary study on size and variation of pollens and on chromosome numbers of Camellia spp. For Sci Tech 3: 15-17.
    • (1984) For Sci Tech , vol.3 , pp. 15-17
    • Zhuang, R.L.1    Dong, R.X.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.