Subchromosomal karyotype evolution in Equidae

Chromosome Research

Volumn 21, Issue 2, 2013, Pages 175-187

  Musilova, P ^a   Kubickova, S ^a   Vahala, J ^b   Rubes, J ^a  

^a VETERINARY RESEARCH INSTITUTE   (Czech Republic)

^b Dvur Kralove Zoo ^*  (Czech Republic)

Author keywords

arm specific probes; BAC; chromosome rearrangements; comparative mapping; Equus; region specific probes

Indexed keywords

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CENTROMERE; CHROMOSOME 10P; CHROMOSOME 13; CHROMOSOME 16; CHROMOSOME 19; CHROMOSOME 20; CHROMOSOME 3P; CHROMOSOME 7; CHROMOSOME 8P; CHROMOSOME 8Q; CHROMOSOME INVERSION; CHROMOSOME MAP; CHROMOSOME PAINTING; HORSE; KARYOTYPE EVOLUTION; NONHUMAN; PERICENTRIC CHROMOSOME INVERSION; PRIORITY JOURNAL;

ANIMALS; CENTROMERE; CHROMOSOME INVERSION; CHROMOSOME MAPPING; CHROMOSOME PAINTING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; EQUIDAE; EVOLUTION, MOLECULAR; GENE REARRANGEMENT; IN SITU HYBRIDIZATION, FLUORESCENCE; KARYOTYPE; SPECIES SPECIFICITY; TELOMERE;

BACTERIA (MICROORGANISMS); EQUIDAE; EQUUS; EQUUS ASINUS; EQUUS KIANG; EQUUS SUBG. HIPPOTIGRIS;

EID: 84880573446     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-013-9346-z     Document Type: Article

References (36)

1. Brinkmeyer-Langford C, Raudsepp T, Lee EJ et al (2005) A high-resolution physical map of equine homologs of HSA19 shows divergent evolution compared with other mammals. Mamm Genome 16:631-649
2. Carbone L, Nergadze SG, Magnani E et al (2006) Evolutionary movement of centromeres in horse, donkey, and zebra. Genomics 87:777-782
3. n sequences in chromosomes of some domestic animals by fluorescence in situ hybridization. Hereditas 123:269-274
4. Ferguson-Smith MA, Trifonov V (2007) Mammalian karyotype evolution. Nat Rev Genet 8:950-962
5. George M Jr, Ryder OA (1986) Mitochondrial DNA evolution in the genus Equus. Mol Biol Evol 3:535-546
6. Kruger K, Gaillard C, Stranzinger G, Rieder S (2005) Phylogenetic analysis and species allocation of individual equids using microsatellite data. J Anim Breed Genet 122:78-86
7. Kubickova S, Cernohorska H, Musilova P, Rubes J (2002) The use of laser microdissection for the preparation of chromosome-specific painting probes in farm animals. Chromosome Res 10:571-577
8. Lear TL (2001) Chromosomal distribution of the telomere sequence (TTAGGG)(n) in the Equidae. Cytogenet Cell Genet 93:127-130
9. Leeb T, Vogl C, Zhu B et al (2006) A human-horse comparative map based on equine BAC end sequences. Genomics 87:772-776
10. Locke DP, Hillier LW, Warren WC et al (2011) Comparative and demographic analysis of orang-utan genomes. Nature 469:529-533
11. Musilova P, Kubickova S, Vychodilova-Krenkova L et al (2005) Cytogenetic mapping of immunity-related genes in the domestic horse. Anim Genet 36:507-510
12. Musilova P, Kubickova S, Zrnova E, Horin P, Vahala J, Rubes J (2007) Karyotypic relationships among Equus grevyi, Equus burchelli and domestic horse defined using horse chromosome arm-specific probes. Chromosome Res 15:807-813
13. Musilova P, Kubickova S, Horin P, Vodicka R, Rubes J (2009) Karyotypic relationships in Asiatic asses (kulan and kiang) as defined using horse chromosome arm-specific and region-specific probes. Chromosome Res 17:783-790
14. Musilova P, Kubickova S, Hornak M, Cernohorska H, Vahala J, Rubes J (2010) Different fusion configurations of evolutionarily conserved segments in karyotypes of Potamochoerus porcus and Phacochoerus africanus. Cytogenet Genome Res 129:305-309
15. Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E (2003a) Homologous fission event(s) implicated for chromosomal polymorphisms among five species in the genus Equus. Cytogenet Genome Res 102:217-221
16. Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E (2003b) FISH analysis comparing genome organization in the domestic horse (Equus caballus) to that of the Mongolian wild horse (E. przewalskii). Cytogenet Genome Res 102:222-225
17. Nowak RM (1999) Walker's mammals of the world, vol. 2, 6th edn. The Johns Hopkins University Press, Baltimore
18. Oakenfull EA, Clegg JB (1998) Phylogenetic relationships within the genus Equus and the evolution of alpha and theta globin genes. J Mol Evol 47:772-783
19. Oakenfull EA, Lim HN, Ryder OA (2000) A survey of equid mitochondrial DNA: implications for the evolution, genetic diversity and conservation of Equus. Conserv Genet 1:341-355
20. Piras FM, Nergadze SG, Poletto V et al (2009) Phylogeny of horse chromosome 5q in the genus Equus and centromere repositioning. Cytogenet Genome Res 126:165-172
21. Piras FM, Nergadze SG, Magnani E et al (2010) Uncoupling of satellite DNA and centromeric function in the genus Equus. PLoS Genet 6:e1000845
22. Raudsepp T, Christensen K, Chowdhar BP (2000) Cytogenetics of donkey chromosomes: nomenclature proposal based on GTG-banded chromosomes and depiction of NORs and telomeric sites. Chromosome Res 8:659-670
23. Raudsepp T, Lear TL, Chowdhary BP (2002) Comparative mapping in equids: the asine X chromosome is rearranged compared to horse and Hartmann's mountain zebra. Cytogenet Genome Res 96:206-209
24. Richard F, Messaoudi C, Lombard M, Dutrillaux B (2001) Chromosome homologies between man and mountain zebra (Equus zebra hartmannae) and description of a new ancestral synteny involving sequences homologous to human chromosomes 4 and 8. Cytogenet Cell Genet 93:291-296
25. Robinson TJ, Ruiz-Herrera A, Avise JC (2008) Hemiplasy and homoplasy in the karyotypic phylogenies of mammals. Proc Natl Acad Sci U S A 105:14477-1481
26. Rocchi M, Archidiacono N, Schempp W, Capozzi O, Stanyon R (2012) Centromere repositioning in mammals. Heredity 108:59-67
27. Rubes J, Pagacova E, Kopecna O et al (2007) Karyotype, centric fusion polymorphism and chromosomal aberrations in captive-born mountain reedbuck (Redunca fulvorufula). Cytogenet Genome Res 116:263-268
28. Ryder OA, Epel NC, Benirschke K (1978) Chromosome banding studies of the Equidae. Cytogenet Cell Genet 20:323-350
29. Santani A, Raudsepp T, Chowdhary BP (2002) Interstitial telomeric sites and NORs in Hartmann's zebra (Equus zebra hartmannae) chromosomes. Chromosome Res 10:527-534
30. Schermelleh L, Thalhammer S, Heckl W et al (1999) Laser microdissection and laser pressure catapulting for the generation of chromosome-specific paint probes. Biotechniques 27:362-267
31. Steiner CC, Ryder OA (2011) Molecular phylogeny and evolution of the Perissodactyla. Zool J Linn Soc 163:1289-1303
32. Trifonov VA, Stanyon R, Nesterenko AI et al (2008) Multidirectional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla. Chromosome Res 16:89-107
33. Trifonov VA, Musilova P, Kulemsina AI (2012) Chromosome evolution in Perissodactyla. Cytogenet Genome Res 137:208-217
34. Wade CM, Giulotto E, Sigurdsson S et al (2009) Genome sequence, comparative analysis, and population genetics of the domestic horse. Science 326:865-867
35. Yang F, Fu B, O'Brien PCM, Robinson TJ, Ryder OA, Ferguson-Smith MA (2003) Karyotypic relationships of horses and zebras: results of cross-species chromosome painting. Cytogenet Genome Res 102:235-243
36. Yang FT, Fu BY, O'Brien PCM, Nie WH, Ryder OA, Ferguson-Smith MA (2004) Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules. Chromosome Res 12:65-76