Combination of capillary isoelectric focusing in a tapered capillary with MALDI-TOF MS for rapid and reliable identification of Dickeya Species from plant samples

Analytical Chemistry

Volumn 85, Issue 14, 2013, Pages 6806-6812

  Horká, Marie ^a   Šalplachta, Jiří ^a   Karásek, Pavel ^a   Kubesová, Anna ^a   Horký, Jaroslav ^b   Matoušková, Hana ^b   Šlais, Karel ^a   Roth, Michal ^a  

^a INSTITUTE OF ANALYTICAL CHEMISTRY   (Czech Republic)

^b State Phytosanitary Administration   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

CAPILLARY ISOELECTRIC FOCUSING; CLOSE PROXIMITY; ISO-ELECTRIC POINTS; MATRIX-ASSISTED LASER DESORPTION/IONIZATION-TIME-OF-FLIGHT MASS SPECTROMETRY; PLANT SAMPLES; PLANT TISSUES; RELIABLE DETECTION; SEPARATION EFFICIENCY;

ELECTROPHORESIS; MASS SPECTROMETRY; TISSUE;

BACTERIA;

PLANT EXTRACT; VEGETABLE PROTEIN;

ARTICLE; CAPILLARY ELECTROPHORESIS; CHEMISTRY; ENTEROBACTERIACEAE; ISOELECTRIC FOCUSING; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; METHODOLOGY; STANDARD; TIME;

ELECTROPHORESIS, CAPILLARY; ENTEROBACTERIACEAE; ISOELECTRIC FOCUSING; PLANT EXTRACTS; PLANT PROTEINS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TIME FACTORS;

EID: 84880541489     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac4009176     Document Type: Article

References (39)

1. Shimura, K. Electrophoresis 2009, 30, 11-28
2. Rodriguez, M. A.; Armstrong, D. W. J. Chromatogr., B 2004, 800, 7-25
3. Petr, J.; Maier, V. Trends Anal. Chem. 2012, 31, 9-22
4. Kenndler, E.; Blaas, D. Trends Anal. Chem. 2001, 20, 543-551
5. Harden, V. P.; Harris, J. O. J. Bacteriol. 1953, 65, 198-202
6. RuÌŠžička, F.; Horká, M.; Holá, V. Capillary electrophoresis of carbohydrates: from monosaccharides to complex polysaccharides; Volpi, N., Ed.; Humana Press: New York, 2011; pp 105-126.
7. Rijnaarts, H. H. M.; Norde, W.; Lyklema, J.; Zehnder, A. J. B. Colloids Surf., B 1995, 4, 191-197
8. Sławiak, M.; van Beckhoven, J. R. C. M.; Speksnijder, A. G. C. L.; Czajkowski, R.; Grabe, G.; van der Wolf, J. M. Eur. J. Plant Pathol. 2009, 125, 245-261
9. Šalplachta, J.; Kubesová, A.; Horká, M. Proteomics 2012, 12, 2927-2936
10. Fedotov, P. S.; Vanifativa, N. G.; Shkinev, V. M.; Spivakov, B. Y. Anal. Bioanal. Chem. 2011, 400, 1787-1804
11. Poortinga, A. T.; Bos, R.; Norde, W.; Busscher, H. J. Surf. Sci. Rep. 2002, 47, 1-32
12. Wilson, W. W.; Wade, M. M.; Holman, S. C.; Champlin, F. R. J. Microbiol. Methods 2001, 43, 153-164
13. Horká, M.; RuÌŠžička, F.; Horký, J.; Holá, V.; Šlais, K. J. Chromatogr., B 2006, 841, 152-159
14. Horká, M.; RuÌŠžička, F.; Holá, V.; Šlais, K. Anal. Bioanal. Chem. 2006, 385, 840-846
15. Horká, M.; RuÌŠžička, F.; Holá, V.; Šlais, K. Electrophoresis 2009, 30, 2134-2141
16. Horká, M.; RuÌŠžička, F.; Kubesová, A.; Němcová, E.; Šlais, K. J. Chromatogr., A 2011, 1218, 3900-3907
17. Šlais, K. J. Microcol. Sep. 1993, 5, 469-479
18. Šlais, K. J. Chromatogr., A 1994, 684, 149-161
19. Šlais, K. J. Microcol. Sep. 1995, 7, 127-135
20. Šlais, K.; Horká, M.; Karásek, P.; Planeta, J.; Roth, M. Anal. Chem. 2013, 85, 4296-4300
21. Karásek, P.; Planeta, J.; Roth, M. Anal. Chem. 2013, 85, 327-333
22. Charkowsky, A. O. Plant-Associated Bacteria; Gnanamanickam, S. S., Ed.; Springer: Dordrecht, Netherlands, 2006; pp 423-505.
23. Toth, I. K.; van der Wolf, J. M.; Saddler, G.; Lojkowska, E.; Helias, V.; Pirhonen, M.; Tsror, L.; Elphinstone, J. G. Plant Pathol. 2011, 60, 385-399
24. Ma, B.; Hibbing, M. E.; Kim, H. S.; Reedy, R. M.; Yedidia, Iris; Breuer, J.; Breuer, J.; Glasner, J. D.; Perna, N. T.; Kelman, A.; Charkowski, A. O. Phytopathology 2007, 97, 1150-1163
25. Czajkowski, R.; Perombelon, M. C. M.; van Veen, J. A.; der Wolf, J. M. Plant Pathol. 2011, 60, 999-1013
26. Barras, F.; van Gijsegem, F.; Chatterjee, A. K. Annu. Rev. Phytopathol. 1994, 32, 201-234
27. Tsror, L.; Erlich, O.; Hazanovsky, M.; Ben Daniel, B.; Zig, U.; Lebiush, S. Plant Pathol. 2012, 61, 161-168
28. Giebel, R.; Worden, C.; Rust, S. M.; Kleinheinz, G. T.; Robbins, M.; Sandrin, T. R. Adv. Appl. Microbiol. 2010, 71, 149-184
29. Welker, M.; Moore, E. R. B. Syst. Appl. Microbiol. 2011, 34, 2-11
30. Ahmad, F.; Babalola, O. O.; Tak, H. I. Anal. Bioanal. Chem. 2012, 404, 1247-1255
31. Lartigue, M. F. Infect., Genet. Evol. 2013, 13, 230-235
32. Wensing, A.; Gernold, M.; Geider, K. J. Appl. Microbiol. 2012, 112, 147-158
33. Sauer, S.; Freiwald, A.; Maier, T.; Kube, M.; Reinhardt, R.; Kostrzewa, M.; Geider, K. PLoS One 2008, 3, e2843.
34. Hirokawa, T.; Nishino, M.; Aoki, N.; Sawamoto, Y. K. T. Y.; Akiyama, J. I. J. Chromatogr., A 1983, 271, D1-D106
35. Acevedo, F. J. Chromatogr., A 1991, 545, 391-396
36. ŠtÊastná, M.; Trávníček, M.; Šlais, K. Electrophoresis 2005, 26, 53-59
37. ŠtÊastná, M.; Šlais, K. J. Chromatogr. A 2003, 1008, 193-203
38. Pérombelon, M. C. M.; Burnett, E. M. Potato Res. 1991, 34, 79-85
39. Righetti, P. G. J. Chromatogr., A 2004, 1037, 491-499