Latest improvements in CIEF: From proteins to microorganisms

Proteomics

Volumn 12, Issue 19-20, 2012, Pages 2927-2936

  Šalplachta, Jiří ^a   Kubesová, Anna ^a   Horká, Marie ^a  

^a INSTITUTE OF ANALYTICAL CHEMISTRY   (Czech Republic)

Author keywords

Bacteria; CIEF; Fungi; Microbiology; Proteins; Viruses

Indexed keywords

CELL SURFACE PROTEIN;

BACTERIUM IDENTIFICATION; CAPILLARY ISOELECTRIC FOCUSING; FUNGUS IDENTIFICATION; LABORATORY DEVICE; MATERIAL COATING; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; REVIEW; SURFACE CHARGE; SURFACE PROPERTY; VIRUS IDENTIFICATION; YEAST;

ANIMALS; BACTERIA; FUNGI; HUMANS; ISOELECTRIC FOCUSING; PROTEINS; VIRUSES;

EID: 84867830278     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201200136     Document Type: Review

References (98)

1. Hjerten, S., Zhu, M. D., Adaptation of the equipment for high-performance electrophoresis to isoelectric focusing. J. Chromatogr. 1985, 346, 265-270.
2. Shimura, K., Recent advances in capillary isoelectric focusing: 1997-2001. Electrophoresis 2002, 23, 3847-3857.
3. Silvertand, L. H. H., Torano, J. S., van Bennekom, W. P., de Jong, G. J., Recent developments in capillary isoelectric focusing. J. Chromatogr. A 2008, 1204, 157-170.
4. Shimura, K., Recent advances in IEF in capillary tubes and microchips. Electrophoresis 2009, 30, 11-28.
5. Haselberg, R., de Jong, G. J., Somsen, G. W., Capillary electrophoresis-mass spectrometry for the analysis of intact proteins 2007-2010. Electrophoresis 2011, 32, 66-82.
6. Kilár, F., Recent applications of capillary isoelectric focusing. Electrophoresis 2003, 24, 3908-3916.
7. Hutterer, K., Dolník, V., Capillary electrophoresis of proteins 2001-2003. Electrophoresis 2003, 24, 3998-4012.
8. Dolník, V., Capillary electrophoresis of proteins 2003-2005. Electrophoresis 2006, 27, 126-141.
9. Dolník, V., Capillary electrophoresis of proteins 2005-2007. Electrophoresis 2008, 29, 143-156.
10. Righetti, P. G., Candiano, G., Recent advances in electrophoretic techniques for the characterization of protein biomolecules: a poker of aces. J. Chromatogr. A 2011, 1218, 8727-8737.
11. Simpson, D. C., Smith, R. D., Combining capillary electrophoresis with mass spectrometry for applications in proteomics. Electrophoresis 2005, 26, 1291-1305.
12. Guo, T., Lee, C. S., Wang, W., DeVoe, D. L. et al., Capillary separations enabling tissue proteomics-based biomarker discovery. Electrophoresis 2006, 27, 3523-3532.
13. Rabilloud, T., Vaezzadeh, A. R., Potier, N., Lelong, C. et al., Power and limitations of electrophoretic separations in proteomics strategies. Mass Spectrom. Rev. 2009, 28, 816-843.
14. Fang, X. P., Balgley, B. M., Lee, C. S., Recent advances in capillary electrophoresis-based proteomic techniques for biomarker discovery. Electrophoresis 2009, 30, 3998-4007.
15. Ahmed, F. E., The role of capillary electrophoresis-mass spectrometry to proteome analysis and biomarker discovery. J. Chromatogr. B 2009, 877, 1963-1981.
16. Rodriguez, M. A., Armstrong, D. W., Separation and analysis of colloidal/nano-particles including microorganisms by capillary electrophoresis: a fundamental review. J. Chromatogr. B 2004, 800, 7-25.
17. Kremser, L., Blaas, D., Kenndler, E., Capillary electrophoresis of biological particles: viruses, bacteria, and eukaryotic cells. Electrophoresis 2004, 25, 2282-2291.
18. Kremser, L., Bilek, G., Blaas, D., Kenndler, E., Capillary electrophoresis of viruses, subviral particles and virus complexes. J. Sep. Sci. 2007, 30, 1704-1713.
19. Košťál, V., Arriaga, E. A., Recent advances in the analysis of biological particles by capillary electrophoresis. Electrophoresis 2008, 29, 2578-2586.
20. Subirats, X., Blaze, D., Kenndler, E., Recent developments in capillary and chip electrophoresis of bioparticles: viruses, organelles, and cells. Electrophoresis 2011, 32, 1579-1590.
21. Petr, J., Maier, V., Analysis of microorganisms by capillary electrophoresis. Trends Anal. Chem. 2012, 31, 9-22.
22. Fedotov, P. S., Vanifativa, N. G., Shkinev, V. M., Spivakov, B. Y., Fractionation and characterization of nano- and microparticles in liquid media. Anal. Bioanal. Chem. 2011, 400, 1787-1804.
23. Harden, V. P., Harris, J. O., The isoelectric point of bacterial cells. J. Bacteriol. 1953, 65, 198-202.
24. Růžička, F., Horká, M., Holá, V., in: Volpi, N. (Ed.), Capillary Electrophoresis of Carbohydrates: from Monosaccharides to Complex Polysaccharides, Humana Press, New York 2011, pp. 105-126.
25. Poortinga, A. T, Bos, R., Norde, W., Busscher, H. J., Electric double layer interactions in bacterial adhesion to surfaces. Surface Sci. Reports 2002, 47, 1-32.
26. Kenndler, E., Blaas, D., Capillary electrophoresis of macromolecular biological assemblies: bacteria and viruses. Trends Anal. Chem. 2001, 20, 543-551.
27. Wilson, W. W., Wade, M. M., Holman, S. C., Champlin, F. R., Status of methods for assessing bacterial cell surface charge properties based on zeta potential measurements. J. Microbiol. Methods 2001, 43, 153-164.
28. Rijnaarts, H. H. M., Norde, W., Lyklema, J., Zehnder, A. J. B., The isoelectric point of bacteria as an indicator for the presence of cell surface polymers that inhibit adhesion. Colloids Surfaces B 1995, 4, 191-197.
29. Shebet, G. V., Lakshmi, M. S., Rao, K. V., Characterization of monogenic groups and estimation of the net negative electric charge on the surface of cells using natural pH gradients. Exp. Cell Res. 1972, 70, 113-123.
30. Jucker, B. A., Harms, H., Zehnder, A. J. B., Adhesion of the positively charged bacterium Stenotrophomonas (Xanthomonas) maltophilia 70401 to glass and Teflon. J. Bacteriol. 1996, 178, 5472-5479.
31. Busscher, H. J., Bellon-Fontaine, M. N., Mozes, N., van der Mei, H. C. et al., An interlaboratory comparison of physico-chemical methods for studying the surface properties of microorganisms-application to Streptococcus thermophilus and Leuconostoc mesenteroides. J. Microbiol. Met. 1990, 12, 101-115.
32. van der Wal, A., Minor, M., Norde, W., Zehnder, A. J. B. et al., Conductivity and dielectric dispersion on Gram-positive bacterial cells. J. Coll. Interf. Sci. 1997, 186, 71-79.
33. Rijnaarts, H. H. M., Norde, W., Bouwer, E. J., Lyklema, J. et al., Reversibility and mechanism of bacterial adhesion. Colloid Surface B 1995, 4, 5-22.
34. Rijnaarts, H. H. M., Norde, W., Bouwer, E. J., Lyklema, J. et al., Bacterial adhesion under static and dynamic conditions. Appl. Environ. Microbiol. 1993, 59, 3255-3265.
35. van Loosdrecht, M. C. M., Lyklema, J., Norde, W., Schraa, G. et al., Electrophoretic mobility and hydrophobicity as a measure to predict the initial steps of bacterial adhesion. Appl. Environ. Microbiol. 1987, 53, 1898-1901.
36. Beveridge, T. J., Graham, L. L., Surface layers of bacteria. Microbiol. Mol. Biol. R. 1991, 55, 684-705.
37. Roosjen, A., de Vries, J., van der Mei, H. C., Norde, W. et al., Stability and effectiveness against bacterial adhesion of poly(ethylene oxide) coatings in biological fluids. J. Biomed. Mater. Res. Part B: Appl. Biomater. 2005, 73B, 347-354.
38. Roosjen. A., Kaper, H. J., van der Mei, H. C., Norde, W. et al., Inhibition of adhesion of yeasts and bacteria by poly(ethylene oxide)-brushes on glass in parallel plate flow chamber. Microbiology 2003, 149, 3239-3246.
39. Rodriguez-Diaz, R., Wehr, T., Zhu, M. D., Capillary isoelectric focusing. Electrophoresis 1997, 18, 2134-2144.
40. Oscarsson, S., Factors affecting protein interaction at sorbent interfaces. J. Chromatogr. B 1997, 699, 117-131.
41. Issaq, H. J., A decade of capillary electrophoresis. Electrophoresis 2000, 21, 1921-1939.
42. Armstrong, D. W., Schulte, G., Schneiderheinze, J. M., Westenberg, D. J., Separating microbes in the manner of molecules. 1. Capillary electrokinetic approaches. Anal. Chem. 1999, 71, 5465-5469.
43. Shen, Y., Xiang, F., Veenstra, T. D., Fung, E. N. et al., High-resolution capillary isoelectric focusing of complex protein mixtures from lysates of microorganisms. Anal. Chem. 1999, 71, 5348-5353.
44. Standahl, O., Edebo, L., Magnusson, K. E., Tagesson, C. et al., Surface-charge characteristics of smooth and rough Salmonella typhimurum bacteria determined by aqueous two-phase partitioning and free zone electrophoresis. Acta Path. Microbiol. Scand. Sect. B 1977, 85, 334-340.
45. Kaper, H. J., Busscher, H. J., Norde, W., Characterization of poly(ethylene oxide) brushes on glass surfaces and adhesion of Staphylococcus epidermidis. J. Biomater. Sci. Polymer. Edn. 2003, 14, 313-324.
46. Razatos, A., Ong, Y. L., Boulay, F., Elbert, D. L. et al., Force measurement between bacteria and poly(ethylene glycol)-coated surfaces. Langmuir 2000, 16, 9155-9158.
47. Ista, L. K., Fan, H., Baca, O., Lopez, G. P., Attachment of bacteria to model solid surfaces: oligo(ethylene glycol) surfaces inhibit bacterial attachment. FEMS Microbiol. Lett. 1996, 142, 59-63.
48. Righetti, P. G., Determination of the isoelectric point of proteins by capillary isoelectric focusing. J. Chromatogr. A 2004, 1037, 491-499.
49. Čáslavská, J., Thormann, W., Electrophoretic separations in PMMA capillaries with uniform and discontinuous buffers. J. Microcol. Sep. 2001, 13, 69-83.
50. Shao, X., Shen, Y., O'Neil, K., Lee, M. L., Capillary electrophoresis using diol-bonded fused-silica capillaries. J. Chromatogr. A 1999, 830, 415-422.
51. Tian, H., Brody, L. C., Mao, D., Landers, J. P., Effective capillary electrophoresis-based heteroduplex analysis through optimization of surface coating and polymer networks. Anal. Chem. 2000, 72, 5483-5492.
52. Shen, Y., Smith, R. D., High-resolution capillary isoelectric focusing of proteins using highly hydrophilic-substituted cellulose-coated capillaries. J. Microcol. Sep. 2000, 12, 135-141.
53. Hjertén, S., High-performance electrophoresis-elimination of electroendosmosis and solute adsorption. J. Chromatogr. 1985, 347, 191-198.
54. Zhao, Z., Malik, A., Lee, M. L., Solute adsorption on polymer-coated fused-silica capillary electrophoresis columns using selected protein and peptide standards. Anal. Chem. 1993, 65, 2747-2752.
55. Yao, X. W., Regnier, F. E., Polymer-coated and surfactant-coated capillaries for isoelectric-focusing. J. Chromatogr. 1993, 632, 185-193.
56. Šlais, K., Horká, M., Nováčková, J., Friedl, Z., Fluorescein-based pI markers for capillary isoelectric focusing with laser-induced fluorescence detection. Electrophoresis 2002, 23, 1682-1688.
57. Horká, M., Willimann, T., Blum, M., Nording, P. et al., Capillary isoelectric focusing with UV-induced fluorescence detection. J. Chromatogr. A 2001, 916, 65-71.
58. Szumski, M., Klodzinska, E., Buszewski, B., Separation of microorganisms using electromigration techniques. J. Chromatogr. A 2005, 1084, 186-193.
59. Horká, M., Planeta, J., Růžička, F., Šlais, K., Sol-gel column technology for capillary isoelectric focusing of microorganisms and biopolymers with UV or fluorometric detection. Electrophoresis 2003, 24, 1383-1390.
60. Košťál, V., Katzenmeyer, J., Arriaga, E. A., Capillary electrophoresis in bioanalysis. Anal. Chem. 2008, 80, 4533-4550.
61. Girod, M., Armstrong, D. W., Monitoring the migration behavior of living microorganisms in capillary electrophoresis using laser-induced fluorescence detection with a charge-coupled device imaging system. Electrophoresis 2002, 23, 2048-2056.
62. Zhang, J. Y., Tran, N. T., Weber, J., Slim, C., Poly(N, N-dimethylacrylamide)-grafted polyacrylamide: a self-coating copolymer for sieving separation of native proteins by CE. Electrophoresis 2006, 27, 3086-3092.
63. Monton, M. R. N., Tomita, M., Soga, T. Ishihama, Y., Polymer entrapment in polymerized silicate for preparing highly stable capillary coatings for CE and CE-MS. Anal. Chem. 2007, 79, 7838-7844.
64. Molteni, S., Thormann, W., Experimental aspects of capillary isoelectric-focusing with electroosmotic zone displacement. J. Chromatogr. 1993, 638, 187-193.
65. Preisler, J., Yeung, E. S., Characterization of nonbonded poly(ethylene oxide) coating for capillary electrophoresis via continuous monitoring of electroosmotic flow. Anal. Chem. 1996, 68, 2885-2889.
66. Schneiderheinze, J. M., Armstrong, D. W., Schulte, G., Westenberg, D. J., High efficiency separation of microbial aggregates using capillary electrophoresis. FEMS Microbiol. Lett. 2000, 189, 39-44.
67. Armstrong, D. W., Schneiderheinze, J. M., Kullman, J. P., He, L. F., Rapid CE microbial assays for consumer products that contain active bacteria. FEMS Microbiol. Lett. 2001, 194, 33-37.
68. Armstrong, D. W., Schneiderheinze, J. M., Rapid identification of the bacterial pathogens responsible for urinary tract infections using direct injection CE. Anal. Chem. 2000, 72, 4474-4476.
69. Armstrong, D. W., He, L., Determination of cell viability in single or mixed samples using capillary electrophoresis laser-induced fluorescence microfluidic systems. Anal. Chem. 2001, 73, 4551-4557.
70. Armstrong, D. W., He, L., Girod, M. Rodriguez, M. A. et al., Mechanistic aspects in the generation of apparent ultrahigh efficiencies for colloidal (microbial) electrokinetic separations. Anal. Chem. 2002, 74, 5523-5530.
71. Liu, Z., Pawliszyn, J., Behaviors of the MS2 virus and related antibodies in capillary isoelectric focusing with whole-column imaging detection. Electrophoresis 2005, 26, 556-562.
72. Hjertén, S., Elenbring, K., Kilár, F., Liao, J. L. et al., Carrier-free zone electrophoresis, displacement electrophoresis and isoelectric-focusing in a high-performance electrophoresis apparatus. J. Chromatogr. 1987, 403, 47-61.
73. Schnabel, U., Groiss, F., Blaas, D., Kenndler, E., Determination of the pI of human rhinovirus serotype 2 by capillary isoelectric focusing. Anal. Chem. 1996, 68, 4300-4303.
74. Šlais, K., Friedl, Z., Low-molecular-mass pI markers for isoelectric focusing. J. Chromatogr. A 1994, 661, 249-256.
75. Čáslavská, J., Molteni, S., Chmelík, J., Šlais, K. et al., Behavior of substituted aminomethylphenol dyes in capillary isoelectric-focusing with electroosmotic zone displacement. J. Chromatogr. A 1994, 680, 549-559.
76. Goodridge, L., Goodridge, C., Wu, J., Griffiths, M. et al., Isoelectric point determination of norovirus virus-like particles by capillary isoelectric focusing with whole column imaging detection. Anal. Chem. 2004, 76, 48-52.
77. Liu, Z., Pawliszyn, J., Applications of capillary isoelectric focusing with liquid-core waveguide laser-induced fluorescence whole-column imaging detection. Anal. Biochem. 2005, 336, 94-101.
78. Horká, M., Kubíček, O., Růžička, F., Holá, V. et al., Capillary isoelectric focusing of native and inactivated microorganisms. J. Chromatogr. A 2007, 1155, 164-171.
79. Horká, M., Kubíček, O., Kubesová, A., Kubíčková, Z. et al., Testing of the influenza virus purification by CIEF. Electrophoresis 2010, 31, 331-338.
80. Horká, M., Kubíček, O., Kubesová, A., Rosenbergová, K. et al., Rapid separation and identification of the subtypes of swine and equine influenza A viruses by electromigration techniques with UV and fluorometric detection. Analyst 2011, 136, 3010-3015.
81. Shen, Y. F., Berger, S. J., Smith, R. D., Capillary isoelectric focusing of yeast cells. Anal. Chem. 2000, 72, 4603-4607.
82. Liu, Z., Shan Shan Wu, S. S., Pawliszyn, J., Characterization of plant growth-promoting rhizobacteria using capillary isoelectric focusing with whole column imaging detection. J. Chromatogr. A 2007, 1140, 213-218.
83. Horká, M., Růžička, F., Horký, J., Holá, V. et al., Capillary isoelectric focusing of proteins and microorganisms in dynamically modified fused silica with UV detection. J. Chromatogr. B 2006, 841, 152-159.
84. Horká, M., Růžička, F., Holá, V., Šlais, K., Capillary isoelectric focusing of microorganisms in the pH range 2-5 in a dynamically modified FS capillary with UV detection. Anal. Bioanal. Chem. 2006, 385, 840-846.
85. Horká, M., Růžička, F., Horký, J., Holá, V. et al., Capillary isoelectric focusing and fluorometric detection of proteins and microorganisms dynamically modified by poly(ethylene glycol) pyrenebutanoate. Anal. Chem. 2006, 78, 8438-8444.
86. Horká, M., Růžička, F., Holá, V., Šlais, K., CE separation of proteins and yeasts dynamically modified by PEG pyrenebutanoate with fluorescence detection. Electrophoresis 2007, 28, 2300-2307.
87. Růžička, F., Horká, M., Holá, V., Votava, M., Capillary isoelectric focusing-useful tool for detection of the biofilm formation in Staphylococcus epidermidis. J. Microbiol. Methods 2007, 68, 530-535.
88. Horká, M., Horký, J., Matoušková, H., Šlais, K., Separation of plant pathogens from different hosts and tissues by capillary electromigration techniques. Anal. Chem. 2007, 79, 9539-9546.
89. Horká, M., Horký, J., Matoušková, H., Šlais, K., Free flow and capillary isoelectric focusing of bacteria from the tomatoes plant tissues. J. Chromatogr. A 2009, 1216, 1019-1024.
90. Horká, M., Růžička, F., Holá, V., Šlais, K., Separation of similar yeast strains by IEF techniques. Electrophoresis 2009, 30, 2134-2141.
91. Horká, M., Růžička, F., Holá, V. Kahle, V. et al., Capillary electromigration separation of proteins and microorganisms dynamically modified by chromophoric non-ionogemic surfactant. Anal. Chem. 2009, 81, 6897-6904.
92. Růžička, F., Horká, M., Holá, V., Kubesová, A. et al., The differences in the isoelectric points of biofilm-positive and biofilm-negative Candida parapsilosis strains. J. Microbiol. Methods 2010, 80, 299-301.
93. Horká, M., Horký, J., Kubesová, A., Mazanec, K. et al., Electromigration techniques-a fast and economical tool for differentiation of similar strains of microorganisms. Analyst 2010, 135, 1636-1644.
94. Horká, M., Růžička, F., Kubesová, A., Němcová, E., Šlais, K., Separation of phenotypically indistinguishable Candida species, C. orthopsilosis, C. metapsilosis and C. parapsilosis, by capillary electromigration techniques. J. Chromatogr. A 2011, 1218, 3900-3907.
95. Süle, S., Horká, M., Matoušková, H., Kubesová, A. et al., Characterization of Agrobacterium species by capillary isoelectric focusing. Eur. J. Plant. Pathol. 2012, 132, 81-89.
96. Horká, M., Růžička, F., Kubesová, A., Holá, V. et al., Capillary electrophoresis of conidia from cultivated microscopic filamentous fungi. Anal. Chem. 2009, 81, 3997-4004.
97. Horká, M., Horký, J., Kubesová, A., Zapletalová, E. et al., The trace analysis of microorganisms in real samples by combination of a filtration microcartridge and capillary isoelectric focusing. Anal. Bioanal. Chem. 2011, 400, 3133-3140.
98. Horká, M., Kubesová, A., Šalplachta, J., Zapletalová, E. et al., Capillary and gel electromigration techniques and MALDI-TOF MS-suitable tools for identification of filamentous fungi. Anal. Chim. Acta 2012, 716, 155-162.