Global transcriptome analysis of Escherichia coli exposed to immobilized anthraquinone-2-sulfonate and azo dye under anaerobic conditions

Applied Microbiology and Biotechnology

Volumn 97, Issue 15, 2013, Pages 6895-6905

  Zhang, Hai Kun ^a   Lu, Hong ^a   Wang, Jing ^a   Liu, Guang Fei ^a   Zhou, Ji Ti ^a   Xu, Ming Yi ^a  

^a DALIAN UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

Azo dye; Escherichia coli K 12; Immobilized anthraquinone 2 sulfonate; Microarray; Response; Transcription

Indexed keywords

ANTHRAQUINONE 2 SULFONATES; ESCHERICHIA COLI K-12; FORMATE DEHYDROGENASE; OUTER MEMBRANE PROTEIN; RESPONSE; STRESS RESPONSE GENES; TRANSCRIPTOME ANALYSIS; XENOBIOTIC COMPOUNDS;

AROMATIC COMPOUNDS; AZO DYES; BIOASSAY; BIOCHEMISTRY; BIOCHIPS; BIOLOGICAL MEMBRANES; ENCODING (SYMBOLS); ESCHERICHIA COLI; GENES; KETONES; MICROARRAYS; MICROORGANISMS;

TRANSCRIPTION;

ALCOHOL DEHYDROGENASE; ANTHRAQUINONE 2 SULFONATE; AZO DYE; AZO REDUCTASE; CATALASE PEROXIDASE; CYTOCHROME C552; DIMETHYL SULFOXIDE REDUCTASE; FLAVOPROTEIN; FORMATE DEHYDROGENASE; FUMARATE REDUCTASE; GLUCOSE; HEAT SHOCK PROTEIN; MENAQUINONE; NITRATE REDUCTASE; NITRITE REDUCTASE; OUTER MEMBRANE PROTEIN; OXIDOREDUCTASE; QUINONE DERIVATIVE; REGULATOR PROTEIN; SUPEROXIDE DISMUTASE; THIOREDOXIN 2; THIOREDOXIN REDUCTASE; TRANSCRIPTOME; UNCLASSIFIED DRUG;

ANOXIC CONDITIONS; COLOR; DYE; EXPERIMENTAL STUDY; GENE EXPRESSION; GENOME; MEMBRANE; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; PROTEIN;

ADAPTATION; ARTICLE; BACTERIAL GROWTH; DECOLORIZATION; DNA MICROARRAY; ELECTRON TRANSPORT; ESCHERICHIA COLI; GENE DELETION; GENE EXPRESSION; GLUCOSE METABOLISM; HYBRIDIZATION; IMMOBILIZATION; NONHUMAN; REAL TIME POLYMERASE CHAIN REACTION; REDUCTION KINETICS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STRESS; UPREGULATION;

ANAEROBIOSIS; ANTHRAQUINONES; AZO COMPOUNDS; COLOR; COLORING AGENTS; ESCHERICHIA COLI; GENE EXPRESSION PROFILING; GENES, BACTERIAL; REAL-TIME POLYMERASE CHAIN REACTION; RNA, MESSENGER; TRANSCRIPTOME; UP-REGULATION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; ESCHERICHIA COLI K12;

EID: 84880508347     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-013-5066-8     Document Type: Article

References (35)

1. Alvarez LH, Perez-Cruz MA, Rangel-Mendez JR, Cervantes FJ (2010) Immobilized redox mediator on metal-oxides nanoparticles and its catalytic effect in a reductive decolorization process. J Hazard Mater 184(1-3):268-272
2. Beliaev AS, Thompson DK, Khare T, Lim H, Brandt CC, Li G, Murray AE, Heidelberg JF, Giometti CS, Yates J 3rd, Nealson KH, Tiedje JM, Zhou J (2002) Gene and protein expression profiles of Shewanella oneidensis during anaerobic growth with different electron acceptors. OMICS 6(1):39-60
3. Beliaev AS, Klingeman DM, Klappenbach JA, Wu L, Romine MF, Tiedje JM, Nealson KH, Zhou J (2005) Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptors. J Bacteriol 187(20):7138-7145
4. Bencheikh-Latmani R, Williams SM, Haucke L, Criddle CS, Wu L, Zhou J, Tebo BM (2005) Global transcriptional profiling of Shewanella oneidensis MR-1 during Cr(VI) and U(VI) reduction. Appl Environ Microbiol 71(11):7453-7460
5. Benz M, Schink B, Brune A (1998) Humic acid reduction by Propionibacterium freudenreichii and other fermentative bacteria. Appl Environ Microbiol 64(11):4507-4512
6. Bücking C, Piepenbrock A, Kappler A, Gescher J (2012) Outer-membrane cytochrome-independent reduction of extracellular electron acceptors in Shewanella oneidensis. Microbiology 158(Pt 8):2144-2157
7. Cervantes FJ, de Bok FAM, Duong-Dac T, Stams AJM, Lettinga G, Field JA (2002) Reduction of humic substances by halorespiring, sulphate-reducing and methanogenic microorganisms. Environ Microbiol 4(1):51-57
8. Cervantes FJ, Garcia-Espinosa A, Moreno-Reynosa MA, Rangel-Mendez JR (2010) Immobilized redox mediators on anion exchange resins and their role on the reductive decolorization of azo dyes. Environ Sci Technol 44(5):1747-1753
9. Cervantes FJ, Martínez CM, Gonzalez-Estrella J, Márquez A, Arriaga S (2013) Kinetics during the redox biotransformation of pollutants mediated by immobilized and soluble humic acids. Appl Microbiol Biotechnol 97(6):2671-2679
10. Choutko A, Glattli A, Fernández C, Hilty C, Wüthrich K, van Gunsteren WF (2011) Membrane protein dynamics in different environments: simulation study of the outer membrane protein X in a lipid bilayer and in a micelle. Eur Biophys J 40(1):39-58
11. Datsenko KA, Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97(12):6640-6645
12. Feng F, Uno BJ, Goto M, Zhang ZX, An DK (2002) Anthraquinone-2-sulfonyl chloride: a new versatile derivatization reagent-synthesis mechanism and application for analysis of amines. Talanta 57(3):481-490
13. Franchini AG, Egli T (2006) Global gene expression in Escherichia coli K-12 during short-term and long-term adaptation to glucose-limited continuous culture conditions. Microbiology 152(7):2111-2127
14. Greenberg JT, Demple B (1989) A global response induced in Escherichia coli by redox-cycling agents overlaps with that induced by peroxide stress. J Bacteriol 171(7):3933-3939
15. Iverson TM, Luna-Chavez C, Cecchini G, Rees DC (1999) Structure of the Escherichia coli fumarate reductase respiratory complex. Science 284(5422):1961-1966
16. Jarboe LR (2011) YqhD: a broad-substrate range aldehyde reductase with various applications in production of biorenewable fuels and chemicals. Appl Microbiol Biotechnol 89(2):249-257
17. Kemp GL, Clarke TA, Marritt SJ, Lockwood C, Poock SR, Hemmings AM, Richardson DJ, Cheesman MR, Butt JN (2010) Kinetic and thermodynamic resolution of the interactions between sulfite and the pentahaem cytochrome NrfA from Escherichia coli. Biochem J 431(1):73-80
18. Kitagawa M, Matsumura Y, Tsuchido T (2000) Small heat shock proteins, IbpA and IbpB, are involved in resistances to heat and superoxide stresses in Escherichia coli. FEMS Microbiol Lett 184(2):165-171
19. Li LH, Wang J, Zhou JT, Yang FL, Jin CY, Qu YY, Li A, Zhang L (2008) Enhancement of nitroaromatic compounds anaerobic biotransformation using a novel immobilized redox mediator prepared by electropolymerization. Bioresour Technol 99(15):6908-6916
20. Liu GF, Zhou JT, Fu QS, Wang J (2009) The Escherichia coli azoreductase AzoR is involved in resistance to thiol-specific stress caused by electrophilic quinones. J Bacteriol 191(20):6394-6400
21. Lu H, Zhou JT, Wang J, Si WL, Teng H, Liu GF (2010) Enhanced biodecolorization of azo dyes by anthraquinone-2-sulfonate immobilized covalently in polyurethane foam. Bioresour Technol 101(18):7185-7188
22. Rau J, Knackmuss HJ, Stolz A (2002) Effects of different quinoid redox mediators on the anaerobic reduction of azo dyes by bacteria. Environ Sci Technol 36(7):1497-1504
23. Schafer FQ, Buettner GR (2001) Redox environment of the cell as viewed through the redox state of the glutathione disulfide/glutathione couple. Free Radic Bio Med 30(11):1191-1212
24. Schwalbach MS, Keatinga DH, Tremainea M, Marnera WD, Zhang Y, Bothfeld W, Higbee A, Grass JA, Cotton C, Reed JL, da Costa Sousa L, Jin M, Balan V, Ellinger J, Dale B, Kiley PJ, Landick R (2012) Complex physiology and compound stress responses during fermentation of alkali-pretreated corn stover hydrolysate by an Escherichia coli ethanologen. Appl Environ Microbiol 78(9):3442-3457
25. Shyu JBH, Lies DP, Newman DK (2002) Protective role of tolC in efflux of the electron shuttle anthraquinone-2,6-disulfonate. J Bacteriol 184(6):1806-1810
26. Sulavik MC, Houseweart C, Cramer C, Jiwani N, Murgolo N, Greene J, DiDomenico B, Shaw KJ, Miller GH, Hare R, Shimer G (2001) Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes. Antimicrob Agents Chemother 45(4):1126-1136
27. Tsukagoshi N, Aono R (2000) Entry into and release of solvents by Escherichia coli in an organic-aqueous two-liquid-phase system and substrate specificity of the AcrAB-TolC solvent-extruding pump. J Bacteriol 182(17):4803-4810
28. Unden G, Bongaerts J (1997) Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptors. BBA - Bioenerg 1320(3):217-234
29. Van der Zee FP, Cervantes FJ (2009) Impact and application of electron shuttles on the redox (bio)transformation of contaminants: A review. Biotechnol Adv 27(3):256-277
30. Villemur R, Lanthier M, Beaudet R, Lépine F (2006) The Desulfitobacterium genus. FEMS Microbiol Rev 30(5):706-733
31. Vogt J, Schulz GE (1999) The structure of the outer membrane protein OmpX from Escherichia coli reveals possible mechanisms of virulence. Structure 7(10):1301-1309
32. Voordeckers JW, Kim BC, Izallalen M, Lovley DR (2010) Role of Geobacter sulfurreducens outer surface c-type cytochromes in reduction of soil humic acid and anthraquinone-2,6-disulfonate. Appl Environ Microbiol 76(7):2371-2375
33. Wan XF, VerBerkmoes NC, McCue LA, Stanek D, Connelly H, Hauser LJ, Wu LY, Liu XD, Yan TF, Leaphart A, Hettich RL, Zhou JZ, Thompson DK (2004) Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis. J Bacteriol 186(24):8385-8400
34. White DG, Goldman JD, Demple B, Levy SB (1997) Role of the acrAB locus in organic solvent tolerance mediated by expression of marA, soxS, or robA in Escherichia coli. J Bacteriol 179(19):6122-6126
35. Yang JN, Wang C, Guo C, Peng XX, Li H (2011) Outer membrane proteome and its regulation networks in response to glucose concentration changes in Escherichia coli. Mol Biosyst 7(11):3087-3093