Surface tension and toxicity changes during biodegradation of carbazole by newly isolated methylotrophic strain Methylobacterium sp. GPE1

International Biodeterioration and Biodegradation

Volumn 84, Issue , 2013, Pages 143-149

  Pasternak, Grzegorz ^a   Kołwzan, Barbara ^a  

^a WROCLAW UNIVERSITY OF TECHNOLOGY   (Poland)

Author keywords

Azaarenes; Biosurfactant; Ecotoxicity; Heterocycles; Heterocyclic compound; Microtox

Indexed keywords

AZAARENES; BIO SURFACTANT; ECOTOXICITY; HETEROCYCLES; HETEROCYCLIC COMPOUND; MICROTOX;

BIODEGRADATION; BIOMOLECULES; MICROBIOLOGY; POLYCYCLIC AROMATIC HYDROCARBONS; SURFACE ACTIVE AGENTS; SURFACE TENSION;

TOXICITY;

BACTERIUM; BIODEGRADATION; BIOMASS; CONCENTRATION (COMPOSITION); ECOTOXICOLOGY; ENERGY EFFICIENCY; EXPERIMENTAL STUDY; IDENTIFICATION METHOD; INHIBITION; ORGANIC COMPOUND; SURFACE TENSION; SURFACTANT; TOXICITY;

METHYLOBACTERIUM; METHYLOBACTERIUM SP.;

EID: 84880329712     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2012.07.021     Document Type: Article

References (41)

1. Allard A.S., Neilson A.H. Bioremediation of organic waste sites: a critical review of microbiological aspects. International Biodeterioration & Biodegradation 1997, 39(4):253-285.
2. Bautista L.F., Sanz R., Molina M.C., Gonzalez N., Sanchez D. Effect of different non-ionic surfactants on the biodegradation of PAHs by diverse aerobic bacteria. International Biodeterioration & Biodegradation 2009, 63(7):913-922.
3. Bodour A.A., Guerrero-Barajas C., Jiorle B.V., Malcomson M.E., Paull A.K., Somogyi A., Trinh L.N., Bates R.B., Maier R.M. Structure and characterization of flavolipids, a novel class of biosurfactants produced by Flavobacterium sp. strain MTN11. Applied and Environmental Microbiology 2004, 70:114-120.
4. Bratbak G. Microscopic methods for measuring bacterial biovolume: epifluorescence microscopy, scanning electron microscopy, and transmission electron microscopy. Handbook of Methods in Aquatic Microbiology 1993, 309-317. Lewis Publishers, Boca Raton, FL. B.F. Kemp, E.B. Sherr, J.J. Cole (Eds.).
5. Daniels R., Reynaert S., Hoekstra H., Verreth C., Janssens J., Braeken K., Fauvart M., Beullens S., Heusdens C., Lambrichts I., De Vos D.E., Vanderleyden J., Vermant J., Michiels J. Quorum signal molecules as biosurfactants affecting swarming in Rhizobium etli. Proceedings of the National Academy of Sciences of the United States of America 2006, 103(40):14965-14970.
6. Gai Z.H., Yu B., Li L., Wang Y., Ma C.Q., Feng J.H., Deng Z.X., Xu P. Cometabolic degradation of dibenzofuran and dibenzothiophene by a newly isolated carbazole-degrading Sphingomonas sp. strain. Applied and Environmental Microbiology 2007, 73(9):2832-2838.
7. Glasel J.A. Validity of nucleic acid purities monitored by 260nm/280nm absorbance ratios. Biotechniques 1995, 18(1):62-63.
8. Grosser R.J., Warshawsky D., Vestal J.R. Indigenous and enhanced mineralization of pyrene, benzo[A]pyrene, and carbazole in soils. Applied and Environmental Microbiology 1991, 57(12):3462-3469.
9. Huntley S., Bonnevie N., Wenning R., Bedbury H. Distribution of polycyclic aromatic hydrocarbons (PAHs) in three Northern New Jersey Waterways. Bulletin of Environmental Contamination and Toxicology 1993, 51(6):865-872.
10. Idris R., Kuffner M., Bodrossy L., Puschenreiter M., Monchy S., Wenzel W.W., Sessitsch A. Characterization of Ni-tolerant methylobacteria associated with the hyperaccumulating plant Thlaspi goesingense and description of Methylobacterium goesingense sp. nov. Systematic and Applied Microbiology 2006, 29(8):634-644.
11. Jha A.M., Singh A.C., Bharti M.K. Clastogenicity of carbazole in mouse bone marrow cells invivo. Mutation Research/Genetic Toxicology and Environmental Mutagenesis 2002, 521(1-2):11-17.
12. Keshavarz T., Lilly M.D., Clarke P.H. Stability of a catabolic plasmid in continuous culture. Journal of General Microbiology 1985, 131(MAY):1193-1203.
13. Kilbane J.J., Daram A., Abbasian J., Kayser K.J. Isolation and characterization of Sphingomonas sp. GTIN11 capable of carbazole metabolism in petroleum. Biochemical and Biophysical Research Communications 2002, 297(2):242-248.
14. Kolwzan B., Kolwzan W., Dziubek A.M., Pasternak G. Statistical approach to assessing groundwater pollution from gasworks. Environment Protection Engineering 2011, 37(1):119-126.
15. Kostman J.R., Edlind T.D., Lipuma J.J., Stull T.L. Molecular epidemiology of Pseudomonas cepacia determined by polymerase chain reaction ribotyping. Journal of Clinical Microbiology 1992, 30(8):2084-2087.
16. Lindum P.W., Anthoni U., Christophersen C., Eberl L., Molin S., Givskov M. N-acyl-L-homoserine lactone autoinducers control production of an extracellular lipopeptide biosurfactant required for swarming motility of Serratia liquefaciens MG1. Journal of Bacteriology 1998, 180(23):6384-6388.
17. Loh K.C., Yu Y.G. Kinetics of carbazole degradation by Pseudomonas putida in presence of sodium salicylate. Water Research 2000, 34(17):4131-4138.
18. Madhaiyan M., Poonguzhali S., Kwon S.W., Sa T.M. Methylobacterium phyllosphaerae sp. nov., a pink-pigmented, facultative methylotroph from the phyllosphere of rice. International Journal of Systematic and Evolutionary Microbiology 2009, 59(1):22-27.
19. Microbics Corporation Microtoxt Manual 1992, Microbics Corporation, Carlsbad, CA, USA.
20. Mueller J.G., Lantz S.E., Ross D., Colvin R.J., Middaugh D.P., Pritchard P.H. Strategy using bioreactors and specially selected microorganisms for bioremediation of groundwater contaminated with creosote and pentachlorophenol. Environmental Science & Technology 1993, 27(4):691-698.
21. Nestler F.H.M. Characterization of wood-preserving coal-tar creosote by gas liquid chromatography. Analytical Chemistry 1974, 46(1):46-53.
22. Nieto Penalver C.G., Morin D., Cantet F., Saurel O., Milon A., Vorholt J.A. Methylobacterium extorquens AM1 produces a novel type of acyl-homoserine lactone with a double unsaturated side chain under methylotrophic growth conditions. FEBS Letters 2006, 580(2):561-567.
23. Norland S. The relation between biomass and volume of bacteria. Handbook of Methods in Aquatic Microbiology 1993, 303-308. Lewis Publishers, Boca Raton, FL. B.F. Kemp, E.B. Sherr, J.J. Cole (Eds.).
24. Nylund L., Heikkila P., Hameila M., Pyy L., Linnainmaa K., Sorsa M. Genotoxic effects and chemical-compositions of 4 creosotes. Mutation Research 1992, 265(2):223-236.
25. Ohhata N., Yoshida N., Egami H., Katsuragi T., Tani Y., Takagi H. An extremely oligotrophic bacterium, Rhodococcus erythropolis N9T-4, isolated from crude oil. Journal of Bacteriology 2007, 189(19):6824-6831.
26. Padoley K.V., Mudliar S.N., Pandey R.A. Heterocyclic nitrogenous pollutants in the environment and their treatment options - An overview. Bioresource Technology 2008, 99(10):4029-4043.
27. Pasternak G., Rutkowski P., Sliwka E., Kolwzan B., Rybak J. Broad coal tar biodegradative potential of Rhodococcus erythropolis B10 strain isolated from former gasworks site. Water Air and Soil Pollution 2011, 214(1-4):599-608.
28. Pomini A.M., Cruz P.L.R., Gai C., Araujo W.L., Marsaioli A.J. Long-chain acyl-homoserine lactones from Methylobacterium mesophilicum: synthesis and absolute configuration. Journal of Natural Products 2009, 72(12):2125-2129.
29. Renoux A.Y., Millette D., Tyagi R.D., Samson R. Detoxification of fluorene, phenanthrene, carbazole and p-cresol in columns of aquifer sand as studied by the Microtox (R) assay. Water Research 1999, 33(9):2045-2052.
30. Rotard W., Mailahn W. Gas-chromatographic mass-spectrometric analysis of creosotes extracted from wooden sleepers installed in playgrounds. Analytical Chemistry 1987, 59(1):65-69.
31. Sato S., Ouchiyama N., Kimura T., Nojiri H., Yamane H., Omori T. Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase. Journal of Bacteriology 1997, 179(15):4841-4849.
32. Seo J.S., Keum Y.S., Cho I.K., Li Q.X. Degradation of dibenzothiophene and carbazole by Arthrobacter sp. P1-1. International Biodeterioration & Biodegradation 2006, 58(1):36-43.
33. Smejkalova H., Erb T.J., Fuchs G. Methanol assimilation in Methylobacterium extorquens AM1: demonstration of all enzymes and their regulation. Plos One 2010, 5(10).
34. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol.Biol.Evol. 2011.
35. Tsuda H., Hagiwara A., Shibata M., Ohshima M., Ito N. Carcinogenic effect of carbazole in the liver of (C57BL/6N x C3H/HeN)F1 mice. Journal of the National Cancer Institute 1982, 69(6):1383-1387.
36. Van Aken B., Yoon J.M., Schnoor J.L. Biodegradation of nitro-substituted explosives 2,4,6-trinitrotoluene, hexahydro-1,3,5-trinitro-1,3,5-triazine, an octahydro-1,3,5,7-tetranitro-1,3,5-tetrazocine by a phytosymbiotic Methylobacterium sp. associated with poplar tissues (Populus deltoides x nigra DN34). Applied and Environmental Microbiology 2004, 70(1):508-517.
37. Weisburg W.G., Barns S.M., Pelletier D.A., Lane D.J. 16S Ribosomal DNA amplification for phylogenetic study. Journal of Bacteriology 1991, 173(2):697-703.
38. Willumsen P.A., Johansen J.E., Karlson U., Hansen B.M. Isolation and taxonomic affiliation of N-heterocyclic aromatic hydrocarbon-transforming bacteria. Applied Microbiology and Biotechnology 2005, 67(3):420-428.
39. Xu P., Yu B., Li F.L., Cai X.F., Ma C.Q. Microbial degradation of sulphur, nitrogen and oxygen heterocycles. Trends in Microbiology 2006, 14(9):398-405.
40. Yang M.Y., Li W.M., Guo X.X., Qu Z.H., Zhu X.J., Wang X.Z. Isolation and identification of a carbazole degradation gene cluster from Sphingomonas sp.JS1. World Journal of Microbiology & Biotechnology 2009, 25(9):1625-1631.
41. Zhang Z., Schwartz S., Wagner L., Miller W. Agreedy algorithm for aligning DNA sequences. Journal of Computational Biology 2000, 7(1-2):203-214.