Distinct solid and solution state self-assembly pathways of RADA16-I designer peptide

Journal of Peptide Science

Volumn 19, Issue 8, 2013, Pages 477-484

  Cormier, Ashley R ^a,b   Lopez Majada, Juan M ^a,b   Alamo, Rufina G ^a,b   Paravastu, Anant K ^a,b  

^a FAMU FSU COLLEGE OF ENGINEERING   (United States)

^b FLORIDA STATE UNIVERSITY   (United States)

Author keywords

Designer peptide; Isotopic labeling; Self assembling peptide; Solid state NMR; Structural studies

Indexed keywords

AMYLOID BETA PROTEIN; CARBON 13; NANOFIBER; PEPTIDE DERIVATIVE; RADA16 I PEPTIDE; UNCLASSIFIED DRUG;

ALPHA HELIX; AQUEOUS SOLUTION; ARTICLE; BETA SHEET; CARBON NUCLEAR MAGNETIC RESONANCE; HEATING; INFRARED SPECTROSCOPY; ISOTOPE LABELING; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN SELF ASSEMBLY; PROTON NUCLEAR MAGNETIC RESONANCE; ROOM TEMPERATURE; SOLID STATE; X RAY DIFFRACTION;

DESIGNER PEPTIDE; ISOTOPIC LABELING; SELF-ASSEMBLING PEPTIDE; SOLID STATE NMR; STRUCTURAL STUDIES;

AMYLOID BETA-PEPTIDES; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; NANOFIBERS; PEPTIDE FRAGMENTS; PEPTIDES; PROTEIN REFOLDING; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, SECONDARY; REFERENCE STANDARDS; SOLUTIONS; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; X-RAY DIFFRACTION;

EID: 84880325805     PISSN: 10752617     EISSN: 10991387     Source Type: Journal    
DOI: 10.1002/psc.2524     Document Type: Article

References (24)

1. Ellis-Behnke RG, Liang YX, You SW, Tay DKC, Zhang SG, So KF, Schneider GE. Nano neuro knitting: peptide nanofiber scaffold for brain repair and axon regeneration with functional return of vision. Proc. Natl. Acad. Sci. USA 2006; 103: 5054-5059.
2. Gelain F, Horii A, Zhang SG. Designer self-assembling peptide scaffolds for 3-D tissue cell cultures and regenerative medicine. Macromol. Biosci. 2007; 7: 544-551.
3. Holmes TC, de Lacalle S, Su X, Liu GS, Rich A, Zhang SG. Extensive neurite outgrowth and active synapse formation on self-assembling peptide scaffolds. Proc. Natl. Acad. Sci. USA 2000; 97: 6728-6733.
4. Hamada K, Hirose M, Yamashita T, Ohgushil H. Spatial distribution of mineralized bone matrix produced by marrow mesenchymal stem cells in self-assembling peptide hydrogel scaffold. J. Biomed. Mater. Res. A 2008; 84A: 128-136.
5. Horii A, Wang XM, Gelain F, Zhang SG. Biological designer self-assembling peptide nanofiber scaffolds significantly enhance osteoblast proliferation, differentiation and 3-D migration. PLoS One 2007; 2: e190.
6. Wang XM, Horii A, Zhang SG. Designer functionalized self-assembling peptide nanofiber scaffolds for growth, migration, and tubulogenesis of human umbilical vein endothelial cells. Soft Matter 2008; 4: 2388-2395.
7. Yokoi H, Kinoshita T, Zhang SG. Dynamic reassembly of peptide RADA16 nanofiber scaffold. Proc. Natl. Acad. Sci. USA 2005; 102: 8414-8419.
8. Zhang SG, Holmes TC, Dipersio CM, Hynes RO, Su X, Rich A. Self-complementary oligopeptide matrices support mammalian-cell attachment. Biomaterials 1995; 16: 1385-1393.
9. Cormier AR, Ruiz-Orta C, Alamo RG, Paravastu AK. Solid state self-assembly mechanism of RADA16-I designer peptide. Biomacromolecules 2012; 13: 1794-1804.
10. Paravastu AK, Petkova AT, Tycko R. Polymorphic fibril formation by residues 10-40 of the Alzheimer's beta-amyloid peptide. Biophys. J. 2006; 90: 4618-4629.
11. Petkova AT, Leapman RD, Guo ZH, Yau WM, Mattson MP, Tycko R. Self-propagating, molecular-level polymorphism in Alzheimer's beta-amyloid fibrils. Science 2005; 307: 262-265.
12. Aimoto S. Contemporary methods for peptide and protein synthesis. Curr. Org. Chem. 2001; 5: 45-87.
13. Schaefer J, Stejskal EO. C-13 nuclear magnetic resonance of polymers spinning at magic angle. J. Am. Chem. Soc. 1976; 98: 1031-1032.
14. Tycko R. Symmetry-based constant-time homonuclear dipolar recoupling in solid state NMR. J. Chem. Phys. 2007; 126: 064506.
15. Paravastu AK, Leapman RD, Yau WM, Tycko R. Molecular structural basis for polymorphism in Alzheimer's beta-amyloid fibrils. Proc. Natl. Acad. Sci. USA 2008; 105: 18349-18354.
16. Thermo Scientific Corporation. Graphic relational array management system (GRAMS). (http://www.thermoscientific.com).
17. Hu X, Kaplan D, Cebe P. Determining beta-sheet crystallinity in fibrous proteins by thermal analysis and infrared spectroscopy. Macromolecules 2006; 39: 6161-6170.
18. Rabotyagova OS, Cebe P, Kaplan DL. Self-assembly of genetically engineered spider silk block copolymers. Biomacromolecules 2009; 10: 229-236.
19. Byler DM, Susi H. Examination of the secondary structure of proteins by deconvolved FTIR spectra. Biopolymers 1986; 25: 469-487.
20. Surewicz WK, Mantsch HH. New insight into protein secondary structure from resolution-enhanced infrared-spectra. Biochim. Biophys. Acta 1988; 952: 115-130.
21. Braiman MS, Mogi T, Marti T, Stern LJ, Khorana HG, Rothschild KJ. Vibrational spectroscopy of bacteriorhodopsin mutants: light-driven proton transport involves protonation changes of aspartic-acid residues 85, 96, and 212. Biochemistry 1988; 27: 8516-8520.
22. Drummy LF, Phillips DM, Stone MO, Farmer BL, Naik RR. Thermally induced alpha-helix to beta-sheet transition in regenerated silk fibers and films. Biomacromolecules 2005; 6: 3328-3333.
23. Balbach JJ, Petkova AT, Oyler NA, Antzutkin ON, Gordon DJ, Meredith SC, Tycko R. Supramolecular structure in full-length Alzheimer's beta-amyloid fibrils: evidence for a parallel beta-sheet organization from solid-state nuclear magnetic resonance. Biophys. J. 2002; 83: 1205-1216.
24. Kodali R, Wetzel R. Polymorphism in the intermediates and products of amyloid assembly. Curr. Opin. Struct. Biol. 2007; 17: 48-57.