-
1
-
-
79958038559
-
Epigenetic mechanisms in cognition
-
J.J. Day, and J.D. Sweatt Epigenetic mechanisms in cognition Neuron 70 2011 813 829
-
(2011)
Neuron
, vol.70
, pp. 813-829
-
-
Day, J.J.1
Sweatt, J.D.2
-
2
-
-
84866065416
-
The chromatin fingerprint of gene enhancer elements
-
G.E. Zentner, and P.C. Scacheri The chromatin fingerprint of gene enhancer elements J. Biol. Chem. 287 2012 30888 30896
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 30888-30896
-
-
Zentner, G.E.1
Scacheri, P.C.2
-
3
-
-
80755168331
-
Genetic and epigenetic networks in intellectual disabilities
-
H. van Bokhoven Genetic and epigenetic networks in intellectual disabilities Annu. Rev. Genet. 45 2011 81 104
-
(2011)
Annu. Rev. Genet.
, vol.45
, pp. 81-104
-
-
Van Bokhoven, H.1
-
4
-
-
33746563985
-
Loss-of-function mutations in Euchromatin histone methyl transferase 1 (EHMT1) cause the 9q34 subtelomeric deletion syndrome
-
DOI 10.1086/505693
-
T. Kleefstra, H.G. Brunner, J. Amiel, A.R. Oudakker, W.M. Nillesen, A. Magee, D. Geneviève, V. Cormier-Daire, H. van Esch, and J.P. Fryns Loss-of-function mutations in euchromatin histone methyl transferase 1 (EHMT1) cause the 9q34 subtelomeric deletion syndrome Am. J. Hum. Genet. 79 2006 370 377 (Pubitemid 44141836)
-
(2006)
American Journal of Human Genetics
, vol.79
, Issue.2
, pp. 370-377
-
-
Kleefstra, T.1
Brunner, H.G.2
Amiel, J.3
Oudakker, A.R.4
Nillesen, W.M.5
Magee, A.6
Genevieve, D.7
Cormier-Daire, V.8
Van Esch, H.9
Fryns, J.-P.10
Hamel, B.C.J.11
Sistermans, E.A.12
De Vries, B.B.A.13
Van Bokhoven, H.14
-
5
-
-
84858021960
-
Haploinsufficiency of ARID1B, a member of the SWI/SNF-a chromatin-remodeling complex, is a frequent cause of intellectual disability
-
J. Hoyer, A.B. Ekici, S. Endele, B. Popp, C. Zweier, A. Wiesener, E. Wohlleber, A. Dufke, E. Rossier, and C. Petsch Haploinsufficiency of ARID1B, a member of the SWI/SNF-a chromatin-remodeling complex, is a frequent cause of intellectual disability Am. J. Hum. Genet. 90 2012 565 572
-
(2012)
Am. J. Hum. Genet.
, vol.90
, pp. 565-572
-
-
Hoyer, J.1
Ekici, A.B.2
Endele, S.3
Popp, B.4
Zweier, C.5
Wiesener, A.6
Wohlleber, E.7
Dufke, A.8
Rossier, E.9
Petsch, C.10
-
6
-
-
84862830331
-
Mutations in SWI/SNF chromatin remodeling complex gene ARID1B cause Coffin-Siris syndrome
-
G.W. Santen, E. Aten, Y. Sun, R. Almomani, C. Gilissen, M. Nielsen, S.G. Kant, I.N. Snoeck, E.A. Peeters, and Y. Hilhorst-Hofstee Mutations in SWI/SNF chromatin remodeling complex gene ARID1B cause Coffin-Siris syndrome Nat. Genet. 44 2012 379 380
-
(2012)
Nat. Genet.
, vol.44
, pp. 379-380
-
-
Santen, G.W.1
Aten, E.2
Sun, Y.3
Almomani, R.4
Gilissen, C.5
Nielsen, M.6
Kant, S.G.7
Snoeck, I.N.8
Peeters, E.A.9
Hilhorst-Hofstee, Y.10
-
7
-
-
84859427243
-
Mutations affecting components of the SWI/SNF complex cause Coffin-Siris syndrome
-
Y. Tsurusaki, N. Okamoto, H. Ohashi, T. Kosho, Y. Imai, Y. Hibi-Ko, T. Kaname, K. Naritomi, H. Kawame, and K. Wakui Mutations affecting components of the SWI/SNF complex cause Coffin-Siris syndrome Nat. Genet. 44 2012 376 378
-
(2012)
Nat. Genet.
, vol.44
, pp. 376-378
-
-
Tsurusaki, Y.1
Okamoto, N.2
Ohashi, H.3
Kosho, T.4
Imai, Y.5
Hibi-Ko, Y.6
Kaname, T.7
Naritomi, K.8
Kawame, H.9
Wakui, K.10
-
8
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
A. McKenna, M. Hanna, E. Banks, A. Sivachenko, K. Cibulskis, A. Kernytsky, K. Garimella, D. Altshuler, S. Gabriel, M. Daly, and M.A. DePristo The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data Genome Res. 20 2010 1297 1303
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
Garimella, K.7
Altshuler, D.8
Gabriel, S.9
Daly, M.10
Depristo, M.A.11
-
9
-
-
84857251182
-
CTCF: Insights into insulator function during development
-
M. Herold, M. Bartkuhn, and R. Renkawitz CTCF: insights into insulator function during development Development 139 2012 1045 1057
-
(2012)
Development
, vol.139
, pp. 1045-1057
-
-
Herold, M.1
Bartkuhn, M.2
Renkawitz, R.3
-
10
-
-
0034713375
-
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
-
DOI 10.1038/35013100
-
A.C. Bell, and G. Felsenfeld Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene Nature 405 2000 482 485 (Pubitemid 30367427)
-
(2000)
Nature
, vol.405
, Issue.6785
, pp. 482-485
-
-
Bell, A.C.1
Felsenfeld, G.2
-
11
-
-
84876445686
-
Developmentally programmed 3′ CpG island methylation confers tissue- and cell-type-specific transcriptional activation
-
D.H. Yu, C. Ware, R.A. Waterland, J. Zhang, M.H. Chen, M. Gadkari, G. Kunde-Ramamoorthy, L.M. Nosavanh, and L. Shen Developmentally programmed 3′ CpG island methylation confers tissue- and cell-type-specific transcriptional activation Mol. Cell. Biol. 33 2013 1845 1858
-
(2013)
Mol. Cell. Biol.
, vol.33
, pp. 1845-1858
-
-
Yu, D.H.1
Ware, C.2
Waterland, R.A.3
Zhang, J.4
Chen, M.H.5
Gadkari, M.6
Kunde-Ramamoorthy, G.7
Nosavanh, L.M.8
Shen, L.9
-
12
-
-
0033638334
-
A chromatin insulator determines the nuclear localization of DNA
-
T.I. Gerasimova, K. Byrd, and V.G. Corces A chromatin insulator determines the nuclear localization of DNA Mol. Cell 6 2000 1025 1035
-
(2000)
Mol. Cell
, vol.6
, pp. 1025-1035
-
-
Gerasimova, T.I.1
Byrd, K.2
Corces, V.G.3
-
13
-
-
0037059554
-
CTCF, a candidate trans-acting factor for X-inactivation choice
-
DOI 10.1126/science.1065982
-
W. Chao, K.D. Huynh, R.J. Spencer, L.S. Davidow, and J.T. Lee CTCF, a candidate trans-acting factor for X-inactivation choice Science 295 2002 345 347 (Pubitemid 34074368)
-
(2002)
Science
, vol.295
, Issue.5553
, pp. 345-347
-
-
Chao, W.1
Huynh, K.D.2
Spencer, R.J.3
Davidow, L.S.4
Lee, J.T.5
-
14
-
-
48249153426
-
The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome
-
Y. Fu, M. Sinha, C.L. Peterson, and Z. Weng The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome PLoS Genet. 4 2008 e1000138
-
(2008)
PLoS Genet.
, vol.4
, pp. 1000138
-
-
Fu, Y.1
Sinha, M.2
Peterson, C.L.3
Weng, Z.4
-
15
-
-
77956189840
-
CTCF shapes chromatin by multiple mechanisms: The impact of 20 years of CTCF research on understanding the workings of chromatin
-
R. Ohlsson, M. Bartkuhn, and R. Renkawitz CTCF shapes chromatin by multiple mechanisms: the impact of 20 years of CTCF research on understanding the workings of chromatin Chromosoma 119 2010 351 360
-
(2010)
Chromosoma
, vol.119
, pp. 351-360
-
-
Ohlsson, R.1
Bartkuhn, M.2
Renkawitz, R.3
-
16
-
-
67549119096
-
CTCF: Master weaver of the genome
-
J.E. Phillips, and V.G. Corces CTCF: master weaver of the genome Cell 137 2009 1194 1211
-
(2009)
Cell
, vol.137
, pp. 1194-1211
-
-
Phillips, J.E.1
Corces, V.G.2
-
17
-
-
79959699992
-
CTCF-mediated functional chromatin interactome in pluripotent cells
-
L. Handoko, H. Xu, G. Li, C.Y. Ngan, E. Chew, M. Schnapp, C.W. Lee, C. Ye, J.L. Ping, and F. Mulawadi CTCF-mediated functional chromatin interactome in pluripotent cells Nat. Genet. 43 2011 630 638
-
(2011)
Nat. Genet.
, vol.43
, pp. 630-638
-
-
Handoko, L.1
Xu, H.2
Li, G.3
Ngan, C.Y.4
Chew, E.5
Schnapp, M.6
Lee, C.W.7
Ye, C.8
Ping, J.L.9
Mulawadi, F.10
-
18
-
-
84860015618
-
Loss of maternal CTCF is associated with peri-implantation lethality of Ctcf null embryos
-
J.M. Moore, N.A. Rabaia, L.E. Smith, S. Fagerlie, K. Gurley, D. Loukinov, C.M. Disteche, S.J. Collins, C.J. Kemp, V.V. Lobanenkov, and G.N. Filippova Loss of maternal CTCF is associated with peri-implantation lethality of Ctcf null embryos PLoS ONE 7 2012 e34915
-
(2012)
PLoS ONE
, vol.7
, pp. 34915
-
-
Moore, J.M.1
Rabaia, N.A.2
Smith, L.E.3
Fagerlie, S.4
Gurley, K.5
Loukinov, D.6
Disteche, C.M.7
Collins, S.J.8
Kemp, C.J.9
Lobanenkov, V.V.10
Filippova, G.N.11
-
19
-
-
84865724573
-
CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons
-
T. Hirayama, E. Tarusawa, Y. Yoshimura, N. Galjart, and T. Yagi CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons Cell Rep. 2 2012 345 357
-
(2012)
Cell Rep.
, vol.2
, pp. 345-357
-
-
Hirayama, T.1
Tarusawa, E.2
Yoshimura, Y.3
Galjart, N.4
Yagi, T.5
-
20
-
-
25144454048
-
Epimutation of the telomeric imprinting center region on chromosome 11p15 in Silver-Russell syndrome
-
DOI 10.1038/ng1629, PII NG1629
-
C. Gicquel, S. Rossignol, S. Cabrol, M. Houang, V. Steunou, V. Barbu, F. Danton, N. Thibaud, M. Le Merrer, and L. Burglen Epimutation of the telomeric imprinting center region on chromosome 11p15 in Silver-Russell syndrome Nat. Genet. 37 2005 1003 1007 (Pubitemid 43086160)
-
(2005)
Nature Genetics
, vol.37
, Issue.9
, pp. 1003-1007
-
-
Gicquel, C.1
Rossignol, S.2
Cabrol, S.3
Houang, M.4
Steunou, V.5
Barbu, V.6
Danton, F.7
Thibaud, N.8
Le Merrer, M.9
Burglen, L.10
Bertrand, A.-M.11
Netchine, I.12
Le Bouc, Y.13
-
21
-
-
20144363310
-
Microdeletion of target sites for insulator protein CTCF in a chromosome 11p15 imprinting center in Beckwith-Wiedemann syndrome and Wilms' tumor
-
DOI 10.1073/pnas.0500037102
-
D. Prawitt, T. Enklaar, B. Gärtner-Rupprecht, C. Spangenberg, M. Oswald, E. Lausch, P. Schmidtke, D. Reutzel, S. Fees, and R. Lucito Microdeletion of target sites for insulator protein CTCF in a chromosome 11p15 imprinting center in Beckwith-Wiedemann syndrome and Wilms' tumor Proc. Natl. Acad. Sci. USA 102 2005 4085 4090 (Pubitemid 40388559)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.11
, pp. 4085-4090
-
-
Prawitt, D.1
Enklaar, T.2
Gartner-Rupprecht, B.3
Spangenberg, C.4
Oswald, M.5
Lausch, E.6
Schmidtke, P.7
Reutzel, D.8
Fees, S.9
Lucito, R.10
Korzon, M.11
Brozek, I.12
Limon, J.13
Housman, D.E.14
Pelletier, J.15
Zabel, B.16
-
22
-
-
84865777825
-
Linking disease associations with regulatory information in the human genome
-
M.A. Schaub, A.P. Boyle, A. Kundaje, S. Batzoglou, and M. Snyder Linking disease associations with regulatory information in the human genome Genome Res. 22 2012 1748 1759
-
(2012)
Genome Res.
, vol.22
, pp. 1748-1759
-
-
Schaub, M.A.1
Boyle, A.P.2
Kundaje, A.3
Batzoglou, S.4
Snyder, M.5
-
23
-
-
39149121436
-
Cohesin mediates transcriptional insulation by CCCTC-binding factor
-
DOI 10.1038/nature06634, PII NATURE06634
-
K.S. Wendt, K. Yoshida, T. Itoh, M. Bando, B. Koch, E. Schirghuber, S. Tsutsumi, G. Nagae, K. Ishihara, and T. Mishiro Cohesin mediates transcriptional insulation by CCCTC-binding factor Nature 451 2008 796 801 (Pubitemid 351253176)
-
(2008)
Nature
, vol.451
, Issue.7180
, pp. 796-801
-
-
Wendt, K.S.1
Yoshida, K.2
Itoh, T.3
Bando, M.4
Koch, B.5
Schirghuber, E.6
Tsutsumi, S.7
Nagae, G.8
Ishihara, K.9
Mishiro, T.10
Yahata, K.11
Imamoto, F.12
Aburatani, H.13
Nakao, M.14
Imamoto, N.15
Maeshima, K.16
Shirahige, K.17
Peters, J.-M.18
-
24
-
-
84868554484
-
Commonly altered genomic regions in acute myeloid leukemia are enriched for somatic mutations involved in chromatin remodeling and splicing
-
A. Dolnik, J.C. Engelmann, M. Scharfenberger-Schmeer, J. Mauch, S. Kelkenberg-Schade, B. Haldemann, T. Fries, J. Krönke, M.W. Kühn, and P. Paschka Commonly altered genomic regions in acute myeloid leukemia are enriched for somatic mutations involved in chromatin remodeling and splicing Blood 120 2012 e83 e92
-
(2012)
Blood
, vol.120
-
-
Dolnik, A.1
Engelmann, J.C.2
Scharfenberger-Schmeer, M.3
Mauch, J.4
Kelkenberg-Schade, S.5
Haldemann, B.6
Fries, T.7
Krönke, J.8
Kühn, M.W.9
Paschka, P.10
-
25
-
-
79952381408
-
CREBBP mutations in relapsed acute lymphoblastic leukaemia
-
C.G. Mullighan, J. Zhang, L.H. Kasper, S. Lerach, D. Payne-Turner, L.A. Phillips, S.L. Heatley, L. Holmfeldt, J.R. Collins-Underwood, and J. Ma CREBBP mutations in relapsed acute lymphoblastic leukaemia Nature 471 2011 235 239
-
(2011)
Nature
, vol.471
, pp. 235-239
-
-
Mullighan, C.G.1
Zhang, J.2
Kasper, L.H.3
Lerach, S.4
Payne-Turner, D.5
Phillips, L.A.6
Heatley, S.L.7
Holmfeldt, L.8
Collins-Underwood, J.R.9
Ma, J.10
-
26
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
B. Langmead, C. Trapnell, M. Pop, and S.L. Salzberg Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Genome Biol. 10 2009 R25
-
(2009)
Genome Biol.
, vol.10
, pp. 25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
27
-
-
77958471357
-
Differential expression analysis for sequence count data
-
S. Anders, and W. Huber Differential expression analysis for sequence count data Genome Biol. 11 2010 R106
-
(2010)
Genome Biol.
, vol.11
, pp. 106
-
-
Anders, S.1
Huber, W.2
-
28
-
-
0034887203
-
Creating the gene ontology resource: Design and implementation
-
Gene Ontology Consortium
-
G.O. Consortium Gene Ontology Consortium Creating the gene ontology resource: design and implementation Genome Res. 11 2001 1425 1433
-
(2001)
Genome Res.
, vol.11
, pp. 1425-1433
-
-
Consortium, G.O.1
-
30
-
-
33847190987
-
Identification of novel functional TBP-binding sites and general factor repertoires
-
S. Denissov, M. van Driel, R. Voit, M. Hekkelman, T. Hulsen, N. Hernandez, I. Grummt, R. Wehrens, and H. Stunnenberg Identification of novel functional TBP-binding sites and general factor repertoires EMBO J. 26 2007 944 954
-
(2007)
EMBO J.
, vol.26
, pp. 944-954
-
-
Denissov, S.1
Van Driel, M.2
Voit, R.3
Hekkelman, M.4
Hulsen, T.5
Hernandez, N.6
Grummt, I.7
Wehrens, R.8
Stunnenberg, H.9
-
31
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
H. Li, and R. Durbin Fast and accurate short read alignment with Burrows-Wheeler transform Bioinformatics 25 2009 1754 1760
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
32
-
-
79953300078
-
FIMO: Scanning for occurrences of a given motif
-
C.E. Grant, T.L. Bailey, and W.S. Noble FIMO: scanning for occurrences of a given motif Bioinformatics 27 2011 1017 1018
-
(2011)
Bioinformatics
, vol.27
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
33
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
WEB SERVER ISSUE
-
T.L. Bailey, M. Boden, F.A. Buske, M. Frith, C.E. Grant, L. Clementi, J. Ren, W.W. Li, and W.S. Noble MEME SUITE: tools for motif discovery and searching Nucleic Acids Res. 37 Web Server issue 2009 W202 W208
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
34
-
-
75549083247
-
JASPAR 2010: The greatly expanded open-access database of transcription factor binding profiles
-
DATABASE ISSUE
-
E. Portales-Casamar, S. Thongjuea, A.T. Kwon, D. Arenillas, X. Zhao, E. Valen, D. Yusuf, B. Lenhard, W.W. Wasserman, and A. Sandelin JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles Nucleic Acids Res. 38 Database issue 2010 D105 D110
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Portales-Casamar, E.1
Thongjuea, S.2
Kwon, A.T.3
Arenillas, D.4
Zhao, X.5
Valen, E.6
Yusuf, D.7
Lenhard, B.8
Wasserman, W.W.9
Sandelin, A.10
-
35
-
-
84864008380
-
Dynamic reconfiguration of long human genes during one transcription cycle
-
J.D. Larkin, P.R. Cook, and A. Papantonis Dynamic reconfiguration of long human genes during one transcription cycle Mol. Cell. Biol. 32 2012 2738 2747
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 2738-2747
-
-
Larkin, J.D.1
Cook, P.R.2
Papantonis, A.3
-
36
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium
-
I. Dunham, A. Kundaje, S.F. Aldred, P.J. Collins, C.A. Davis, F. Doyle, C.B. Epstein, S. Frietze, J. Harrow, R. Kaul ENCODE Project Consortium An integrated encyclopedia of DNA elements in the human genome Nature 489 2012 57 74
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Dunham, I.1
Kundaje, A.2
Aldred, S.F.3
Collins, P.J.4
Davis, C.A.5
Doyle, F.6
Epstein, C.B.7
Frietze, S.8
Harrow, J.9
Kaul, R.10
-
38
-
-
84862908850
-
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
-
G. Li, X. Ruan, R.K. Auerbach, K.S. Sandhu, M. Zheng, P. Wang, H.M. Poh, Y. Goh, J. Lim, and J. Zhang Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation Cell 148 2012 84 98
-
(2012)
Cell
, vol.148
, pp. 84-98
-
-
Li, G.1
Ruan, X.2
Auerbach, R.K.3
Sandhu, K.S.4
Zheng, M.5
Wang, P.6
Poh, H.M.7
Goh, Y.8
Lim, J.9
Zhang, J.10
-
39
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
A. Visel, M.J. Blow, Z. Li, T. Zhang, J.A. Akiyama, A. Holt, I. Plajzer-Frick, M. Shoukry, C. Wright, and F. Chen ChIP-seq accurately predicts tissue-specific activity of enhancers Nature 457 2009 854 858
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
40
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
A.R. Quinlan, and I.M. Hall BEDTools: a flexible suite of utilities for comparing genomic features Bioinformatics 26 2010 841 842
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
|