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Volumn 29, Issue 14, 2013, Pages 1815-1816

PconsC: Combination of direct information methods and alignments improves contact prediction

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 84880209883     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt259     Document Type: Article
Times cited : (68)

References (11)
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    • Burger, L. and van Nimwegen, E. (2010) Disentangling direct from indirect co-evolution of residues in protein alignments. PLoS Comput. Biol., 6, e1000633.
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    • Burger, L.1    Van Nimwegen, E.2
  • 2
    • 84872521100 scopus 로고    scopus 로고
    • Improved contact prediction in proteins: Using pseudoli-kelihoods to infer Potts models
    • Ekeberg, M. et al. (2013) Improved contact prediction in proteins: using pseudoli-kelihoods to infer Potts models. Phys. Rev. E Stat. Nonlin. Soft Matter Phys., 87, 012707.
    • (2013) Phys. Rev. e Stat. Nonlin. Soft Matter Phys. , vol.87 , pp. 012707
    • Ekeberg, M.1
  • 4
    • 84862647180 scopus 로고    scopus 로고
    • Three-dimensional structures of membrane proteins from gen-omic sequencing
    • Hopf, T. et al. (2012) Three-dimensional structures of membrane proteins from gen-omic sequencing. Cell, 149, 1607-1621.
    • (2012) Cell , vol.149 , pp. 1607-1621
    • Hopf, T.1
  • 5
    • 77955591777 scopus 로고    scopus 로고
    • Hidden markov model speed heuristic and iterative HMM search procedure
    • Johnson, L. et al. (2010) Hidden markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics, 11, 431.
    • (2010) BMC Bioinformatics , vol.11 , pp. 431
    • Johnson, L.1
  • 6
    • 84856090271 scopus 로고    scopus 로고
    • PSICOV: Precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
    • Jones, D. et al. (2012) PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments. Bioinformatics, 28, 184-190.
    • (2012) Bioinformatics , vol.28 , pp. 184-190
    • Jones, D.1
  • 7
    • 82855163967 scopus 로고    scopus 로고
    • Protein 3D structure computed from evolutionary sequence variation
    • Marks, D. et al. (2011) Protein 3D structure computed from evolutionary sequence variation. PLoS One, 6, e28766.
    • (2011) PLoS One , vol.6
    • Marks, D.1
  • 8
    • 83755178457 scopus 로고    scopus 로고
    • Direct-coupling analysis of residue coevolution captures native contacts across many protein families
    • Morcos, F. et al. (2011) Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proc. Natl Acad. Sci. USA, 108, E1293-E1301.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108
    • Morcos, F.1
  • 9
    • 80555140075 scopus 로고    scopus 로고
    • Scikit-learn: Machine learning in Python
    • Pedregosa, F. et al. (2011) Scikit-learn: Machine learning in Python. J. Mach. Learn. Res., 12, 2825-2830.
    • (2011) J. Mach. Learn. Res. , vol.12 , pp. 2825-2830
    • Pedregosa, F.1
  • 10
    • 84856489442 scopus 로고    scopus 로고
    • HHblits: Lightning-fast iterative protein sequence searching by HMM-HMM alignment
    • Remmert, M. et al. (2012) HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat. Methods, 9, 173-175.
    • (2012) Nat. Methods , vol.9 , pp. 173-175
    • Remmert, M.1
  • 11
    • 58549114185 scopus 로고    scopus 로고
    • Identification of direct residue contacts in protein-protein interaction by message passing
    • Weigt, M. et al. (2009) Identification of direct residue contacts in protein-protein interaction by message passing. Proc. Natl Acad. Sci. USA, 106, 67-72.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 67-72
    • Weigt, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.