-
1
-
-
85030413626
-
-
Google Trends accessed on 12.03.13
-
Google Trends, http://www.google.com/trends/(accessed on 12.03.13).
-
-
-
-
2
-
-
84861307113
-
The NIST definition of cloud computing
-
P. Mell, T. Grance, The NIST definition of cloud computing, NIST Special Publication 800 (2011) 145.
-
(2011)
NIST Special Publication
, vol.800
, pp. 145
-
-
Mell, P.1
Grance, T.2
-
3
-
-
68649100902
-
A break in the clouds: Towards a cloud definition
-
L.M. Vaquero, L Rodero-Merino, J. Caceres, M. Lindner, A break in the clouds: towards a cloud definition, ACM SIGCOMM Computer Communication Review 39 (2009)50-55.
-
(2009)
ACM SIGCOMM Computer Communication Review
, vol.39
, pp. 50-55
-
-
Vaquero, L.M.1
Rodero-Merino, L.2
Caceres, J.3
Lindner, M.4
-
4
-
-
79951515545
-
Cloud computing-The business perspective
-
S. Marston, Z. Li, S. Bandyopadhyay, J. Zhang, A. Ghalsasi, Cloud computing-the business perspective, Decision Support Systems 51 (2011) 176-189.
-
(2011)
Decision Support Systems
, vol.51
, pp. 176-189
-
-
Marston, S.1
Li, Z.2
Bandyopadhyay, S.3
Zhang, J.4
Ghalsasi, A.5
-
5
-
-
63649117166
-
Cloud computing and emerging IT platforms: Vision, hype, and reality for delivering computing as the 5th utility
-
R. Buyya, CS. Yeo, S. Venugopal, J. Broberg, I. Brandic, Cloud computing and emerging IT platforms: vision, hype, and reality for delivering computing as the 5th utility, Future Generation Computer Systems 25 (2009) 599-616.
-
(2009)
Future Generation Computer Systems
, vol.25
, pp. 599-616
-
-
Buyya, R.1
Yeo, C.S.2
Venugopal, S.3
Broberg, J.4
Brandic, I.5
-
6
-
-
84885180291
-
-
Intel's Vision of the Ongoing Shift to Cloud Computing accessed on 12.03.13
-
Intel's Vision of the Ongoing Shift to Cloud Computing, http://www.intel.ie/content/dam/www/public/us/en/documents/white-papers/ cloud-computing-intel-cloud-2015-vision.pdf (accessed on 12.03.13).
-
-
-
-
7
-
-
63149159223
-
The case for cloud computing
-
R.L. Grossman, The case for cloud computing, IT Professional 11 (2009) 23-27.
-
(2009)
IT Professional
, vol.11
, pp. 23-27
-
-
Grossman, R.L.1
-
8
-
-
84885180210
-
-
Springer
-
R. Hill, L. Hirsch, P. Lake, S. Moshiri, Guide to Cloud Computing, Springer, 2013.
-
(2013)
Guide to Cloud Computing
-
-
Hill, R.1
Hirsch, L.2
Lake, P.3
Moshiri, S.4
-
9
-
-
85030405829
-
-
Deltacloud Web Page accessed on 12.03.13
-
Deltacloud Web Page, http://deltacloud.apache.org/(accessed on 12.03.13).
-
-
-
-
12
-
-
37549003336
-
MapReduce: Simplified data processing on large clusters
-
J. Dean, S. Ghemawat, MapReduce: simplified data processing on large clusters, Communications of the ACM 51 (2008) 107-113.
-
(2008)
Communications of the ACM
, vol.51
, pp. 107-113
-
-
Dean, J.1
Ghemawat, S.2
-
13
-
-
62949225623
-
Cloud computing and grid computing 360-degree compared
-
I. Foster, Y. Zhao, I. Raicu, S. Lu, Cloud computing and grid computing 360-degree compared, in: Grid Computing Environments Workshop, 2008. GCE'08, 2008, pp. 1-10.
-
(2008)
Grid Computing Environments Workshop, 2008. GCE'08
, pp. 1-10
-
-
Foster, I.1
Zhao, Y.2
Raicu, I.3
Lu, S.4
-
14
-
-
78649899214
-
The characteristics of cloud computing
-
IEEE
-
C. Gong, J. Liu, Q. Zhang, H. Chen, Z. Gong, The characteristics of cloud computing, in: Parallel Processing Workshops (ICPPW), 2010 39th International Conference on, IEEE, 2010, pp. 257-259.
-
(2010)
Parallel Processing Workshops (ICPPW), 2010 39th International Conference on
, pp. 257-259
-
-
Gong, C.1
Liu, J.2
Zhang, Q.3
Chen, H.4
Gong, Z.5
-
15
-
-
77950347409
-
A view of cloud computing
-
M. Armbrust, A. Fox, R. Griffith, A.D. Joseph, R. Katz, A. Konwinski, et al., A view of cloud computing, Communications of the ACM 53 (2010) 50-58.
-
(2010)
Communications of the ACM
, vol.53
, pp. 50-58
-
-
Armbrust, M.1
Fox, A.2
Griffith, R.3
Joseph, A.D.4
Katz, R.5
Konwinski, A.6
-
16
-
-
70349750047
-
The eucalyptus open-source cloud-computing system
-
D. Nurmi, R. Wolski, C. Grzegorczyk, G. Obertelli, S. Soman, L. Youseff, et al., The eucalyptus open-source cloud-computing system, in: 9th IEEE/ACM International Symposium on Cluster Computing and the Grid, 2009, pp. 124-131.
-
(2009)
9th IEEE/ACM International Symposium on Cluster Computing and the Grid
, pp. 124-131
-
-
Nurmi, D.1
Wolski, R.2
Grzegorczyk, C.3
Obertelli, G.4
Soman, S.5
Youseff, L.6
-
17
-
-
85030407039
-
-
OpenStack accessed on 18.03.13
-
OpenStack, http://www.openstack.org (accessed on 18.03.13).
-
-
-
-
18
-
-
85030414209
-
-
CloudBroker accessed on 18.03.13
-
CloudBroker, http://www.cloudbroker.com (accessed on 18.03.13).
-
-
-
-
19
-
-
85030409688
-
-
Ported Applications by CloudBroker accessed on 18.03.13
-
Ported Applications by CloudBroker, http://si-se.ch/2013/presentations/ hpc-cloud.pdf (accessed on 18.03.13).
-
-
-
-
20
-
-
84855932239
-
Flexibility analysis of biomacromolecules with application to computer-aided drug design
-
S. Fulle, H. Gohlke, Flexibility analysis of biomacromolecules with application to computer-aided drug design, Methods in Molecular Biology 819(2012) 75-91.
-
(2012)
Methods in Molecular Biology
, vol.819
, pp. 75-91
-
-
Fulle, S.1
Gohlke, H.2
-
21
-
-
85030404321
-
-
Amazon S3 accessed on 12.03.13
-
Amazon S3, http://aws.amazon.com/s3/(accessed on 12.03.13).
-
-
-
-
22
-
-
84885185848
-
-
HPConAWS accessedon 18.03.13
-
HPConAWS, http://aws.amazon.com/hpc-applications(accessedon 18.03.13).
-
-
-
-
25
-
-
85030413221
-
-
Applications Provided by CycleCloud accessed on 12.03.13
-
Applications Provided by CycleCloud, http://www.cyclecomputing.com/ cyclecloud/applications (accessed on 12.03.13).
-
-
-
-
26
-
-
84885186007
-
-
ACECloud-Acellera's On-Demand GPU Computing Service accessed on 12.03.13
-
ACECloud-Acellera's On-Demand GPU Computing Service, http://www.acellera. com/products/acemd/acecloud/(accessed on 12.03.13).
-
-
-
-
27
-
-
64649105762
-
Accelerating molecular dynamic simulation on graphics processing units
-
M.S. Friedrichs, P. Eastman, V. Vaidyanathan, M. Houston, S. Legrand, A.L. Beberg, et al., Accelerating molecular dynamic simulation on graphics processing units, Journal of Computational Chemistry 30 (2009) 864-872.
-
(2009)
Journal of Computational Chemistry
, vol.30
, pp. 864-872
-
-
Friedrichs, M.S.1
Eastman, P.2
Vaidyanathan, V.3
Houston, M.4
Legrand, S.5
Beberg, A.L.6
-
28
-
-
85030413496
-
-
Rosetta@cloud on AWS accessed on 12.03.13
-
Rosetta@cloud on AWS, http://rosetta.insilicos.com (accessed on 12.03.13).
-
-
-
-
29
-
-
85030416147
-
-
Rosetta Online Server accessed on 12.03.13
-
Rosetta Online Server, http://rosettaserver.graylab.jhu.edu/(accessed on 12.03.13).
-
-
-
-
31
-
-
70349932423
-
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
-
G.M. Morris, R. Huey, W. Lindstrom, M.F. Sanner, R.K. Belew, D.S. Goodsell, et al., AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility, Journal of Computatioal Chemistry 30 (2009) 2785-2791.
-
(2009)
Journal of Computatioal Chemistry
, vol.30
, pp. 2785-2791
-
-
Morris, G.M.1
Huey, R.2
Lindstrom, W.3
Sanner, M.F.4
Belew, R.K.5
Goodsell, D.S.6
-
32
-
-
33750991346
-
Benchmarking sets for molecular docking
-
DOI 10.1021/jm0608356
-
N. Huang, B.K. Shoichet, J.J. Irwin, Benchmarking sets for molecular docking, Journal of Medicinal Chemistry 49 (2006) 6789-6801. (Pubitemid 44749746)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.23
, pp. 6789-6801
-
-
Huang, N.1
Shoichet, B.K.2
Irwin, J.J.3
-
33
-
-
0029878720
-
VMD: Visual molecular dynamics
-
DOI 10.1016/0263-7855(96)00018-5
-
W. Humphrey, A. Dalke, K. Schulten, VMD: visual molecular dynamics, Journal of Molecular Graphics 14 (1996) 33-38. (Pubitemid 26152973)
-
(1996)
Journal of Molecular Graphics
, vol.14
, Issue.1
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
34
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
DOI 10.1002/jcc.20289
-
J.C. Phillips, R. Braun, W. Wang, J. Gumbart, E. Tajkhorshid, E. Villa, et al., Scalable molecular dynamics with NAMD, Journal of Computational Chemistry 26 (2005)1781-1802. (Pubitemid 43078511)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
35
-
-
84870057823
-
Bioinformatics clouds forbig data manipulation
-
L Dai, X. Gao, Y. Guo, J. Xiao, Z. Zhang, Bioinformatics clouds forbig data manipulation, Biology Direct 7 (2012) 43.
-
(2012)
Biology Direct
, vol.7
, pp. 43
-
-
Dai, L.1
Gao, X.2
Guo, Y.3
Xiao, J.4
Zhang, Z.5
-
36
-
-
84885174876
-
-
Public Data Sets on AWS accessed on 12.03.13
-
Public Data Sets on AWS, http://aws.amazon.com/publicdatasets/(accessed on 12.03.13).
-
-
-
-
37
-
-
80052308152
-
Biomedical cloud computing with Amazon Web Services
-
V.A. Fusaro, P. Patil, E. Gafni, D.P. Wall, P.J. Tonellato, Biomedical cloud computing with Amazon Web Services, PLoS Computational Biology 7 (2011) e1002147.
-
(2011)
PLoS Computational Biology
, vol.7
-
-
Fusaro, V.A.1
Patil, P.2
Gafni, E.3
Wall, D.P.4
Tonellato, P.J.5
-
38
-
-
85030406773
-
-
NCBI BLAST on Windows Azure accessed on 12.03.13
-
NCBI BLAST on Windows Azure, http://research.microsoft.com/en-us/ projects/ncbi-blast/default.aspx (accessed on 12.03.13).
-
-
-
-
39
-
-
84874404461
-
Developing cloud applications using the e-science central platform
-
H. Hiden, S. Woodman, P. Watson, J. Cala, Developing cloud applications using the e-science central platform, Philosophical Transactions of the Royal Society A371 (2013) 20120085.
-
(2013)
Philosophical Transactions of the Royal Society
, vol.A371
, pp. 20120085
-
-
Hiden, H.1
Woodman, S.2
Watson, P.3
Cala, J.4
-
40
-
-
84876519273
-
Cloud computing for fast prediction of chemical activity
-
Ottawa
-
J. Cała, H. Hiden, P. Watson, S. Woodman, Cloud computing for fast prediction of chemical activity, in: 2nd International Workshop on Cloud Computing and Scientific Applications (CCSA), Ottawa, 2012.
-
(2012)
2nd International Workshop on Cloud Computing and Scientific Applications (CCSA)
-
-
Cała, J.1
Hiden, H.2
Watson, P.3
Woodman, S.4
-
41
-
-
84862545655
-
Accurate protein structure modeling using sparse NMR data and homologous structure information
-
J.M. Thompson, N.G. Sgourakis, G. Liu, P. Rossi, Y. Tang, J.L. Mills, et al., Accurate protein structure modeling using sparse NMR data and homologous structure information, Proceedings of the National Academy of Sciences of the United States America 109 (2012) 9875-9880.
-
(2012)
Proceedings of the National Academy of Sciences of the United States America
, vol.109
, pp. 9875-9880
-
-
Thompson, J.M.1
Sgourakis, N.G.2
Liu, G.3
Rossi, P.4
Tang, Y.5
Mills, J.L.6
-
42
-
-
84862270506
-
Atomic model of the type III secretion system needle
-
A. Loquet, N.G. Sgourakis, R. Gupta, K. Giller, D. Riedel, C. Goosmann, et al., Atomic model of the type III secretion system needle, Nature 486 (2012) 276-279.
-
(2012)
Nature
, vol.486
, pp. 276-279
-
-
Loquet, A.1
Sgourakis, N.G.2
Gupta, R.3
Giller, K.4
Riedel, D.5
Goosmann, C.6
-
43
-
-
84862270506
-
Corrigendum: Atomic model of the type III secretion system needle
-
A. Loquet, N.G. Sgourakis, R. Gupta, K. Giller, D. Riedel, C. Goosmann, et al., Corrigendum: Atomic model of the type III secretion system needle, Nature (2012).
-
(2012)
Nature
-
-
Loquet, A.1
Sgourakis, N.G.2
Gupta, R.3
Giller, K.4
Riedel, D.5
Goosmann, C.6
-
44
-
-
10444272266
-
BOINC: A system for public-resource computing and storage
-
Proceedings - Fifth IEEE/ACM International Workshop on Grid Computing
-
D.P. Anderson, BOINC. A system for public-resource computing and storage, in: Proceedings of the 5th IEEE/ACM International Workshop on Grid Computing, 2004, pp. 4-10. (Pubitemid 40752119)
-
(2004)
Proceedings - IEEE/ACM International Workshop on Grid Computing
, pp. 4-10
-
-
Anderson, D.P.1
-
45
-
-
84885189348
-
-
Research Projects on Microsoft Cloud accessed on 12.03.13
-
Research Projects on Microsoft Cloud, http://research.microsoft.com/en- us/projects/azure/projects.aspx (accessed on 12.03.13).
-
-
-
-
46
-
-
84885175248
-
-
Case Study on Windows Azure accessed on 12.03.13
-
Case Study on Windows Azure, http://blogs.msdn.com/b/windowsazure/ archive/2011/06/16/windows-azure-helps-scientists-unfold-protein-mystery-and- fight-diseas.aspx (accessed on 12.03.13).
-
-
-
-
47
-
-
85030415935
-
-
Eli Lilly on Cloud Computing accessed on 20.03.13
-
Eli Lilly on Cloud Computing, http://www.informationweek.com/hardware/ data-centers/qa-eli-lilly-on-cloud-computing-reality/228200755?pgno=2 (accessed on 20.03.13).
-
-
-
-
48
-
-
85030407814
-
-
Blog of Cycle Computing accessed on 05.03.13
-
Blog of Cycle Computing, http://blog.cyclecomputing.com/(accessed on 05.03.13).
-
-
-
-
49
-
-
85030415768
-
-
Cycle Computing Provisioned a 50, 000 Core Cluster on AWS accessed on 12.03.13
-
Cycle Computing Provisioned a 50, 000 Core Cluster on AWS, http://www.marketwire.com/press-release/Cycle-Computing-Ramps-Global-50000-Core- Cluster-for-Schrodinger-Molecular-Research-1646214.htm (accessed on 12.03.13).
-
-
-
-
50
-
-
77955656513
-
ElectroShape: Fast molecular similarity calculations incorporating shape, chirality and electrostatics
-
M.S. Armstrong, G.M. Morris, P.W. Finn, R. Sharma, L. Moretti, R.I. Cooper, et al., ElectroShape: fast molecular similarity calculations incorporating shape, chirality and electrostatics, Journal of Computer-Aided Molecular Design 24 (2010)789-801.
-
(2010)
Journal of Computer-Aided Molecular Design
, vol.24
, pp. 789-801
-
-
Armstrong, M.S.1
Morris, G.M.2
Finn, P.W.3
Sharma, R.4
Moretti, L.5
Cooper, R.I.6
-
51
-
-
80055087964
-
Improving the accuracy of ultrafast ligand-based screening: Incorporating lipophilicity into ElectroShape as an extra dimension
-
M.S. Armstrong, P.W. Finn, G.M. Morris, W.G. Richards, Improving the accuracy of ultrafast ligand-based screening: incorporating lipophilicity into ElectroShape as an extra dimension, Journal of Computer-Aided Molecular Design 25 (2011)785-790.
-
(2011)
Journal of Computer-Aided Molecular Design
, vol.25
, pp. 785-790
-
-
Armstrong, M.S.1
Finn, P.W.2
Morris, G.M.3
Richards, W.G.4
-
52
-
-
70350786387
-
Molecular similarity including chirality
-
M.S. Armstrong, G.M. Morris, P.W. Finn, R. Sharma, W.G. Richards, Molecular similarity including chirality, Journal of Molecular Graphics and Modelling 28 (2009)368-370.
-
(2009)
Journal of Molecular Graphics and Modelling
, vol.28
, pp. 368-370
-
-
Armstrong, M.S.1
Morris, G.M.2
Finn, P.W.3
Sharma, R.4
Richards, W.G.5
-
53
-
-
84885189161
-
-
StarCluster@MIT accessed on 28.02.13
-
StarCluster@MIT, http://star.mit.edu/cluster/about.html#id9 (accessed on 28.02.13).
-
-
-
-
54
-
-
85030411905
-
-
AWS case study, InhibOx accessed on 28.02.13
-
AWS case study, InhibOx, https://aws.amazon.com/solutions/case-studies/ inhibox (accessed on 28.02.13).
-
-
-
-
56
-
-
85030411759
-
-
Next Generation Cluster Computing on Amazon EC2-the CC2 Instance Type accessed on 28.02.13
-
Next Generation Cluster Computing on Amazon EC2-the CC2 Instance Type, http://aws.typepad.com/aws/2011/11/next-generation-cluster-computing-on-amazon- ec2-the-cc2-instance-type.html (accessed on 28.02.13).
-
-
-
-
57
-
-
85030415346
-
-
Gartner's Hype cycle accessed on 12.03.13
-
Gartner's Hype cycle, http://www.infoq.com/news/2012/08/Gartner-Hype- Cycle-2012 (accessed on 12.03.13).
-
-
-
-
58
-
-
84863884822
-
Genome research in the cloud
-
A. Shanker, Genome research in the cloud, OMICS 16 (2012) 422-4228.
-
(2012)
OMICS
, vol.16
, pp. 422-4228
-
-
Shanker, A.1
-
59
-
-
84864476417
-
NMSim web server: Integrated approach for normal mode-based geometric simulations of biologically relevant conformational transitions in proteins
-
D.M. Krüger, A. Ahmed, H. Gohlke, NMSim web server: integrated approach for normal mode-based geometric simulations of biologically relevant conformational transitions in proteins, Nucleic Acids Research 40 (2012) W310-W316.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Krüger, D.M.1
Ahmed, A.2
Gohlke, H.3
-
60
-
-
84867481889
-
The Molecule Cloud-compact visualization of large collections of molecules
-
P. Ertl, B. Rohde, The Molecule Cloud-compact visualization of large collections of molecules, Journal of Cheminformatics 4 (2012) 12.
-
(2012)
Journal of Cheminformatics
, vol.4
, pp. 12
-
-
Ertl, P.1
Rohde, B.2
|