Evaluating similarity measures for brain image registration

Journal of Visual Communication and Image Representation

Volumn 24, Issue 7, 2013, Pages 977-987

  Razlighi, Q R ^a   Kehtarnavaz, N ^a   Yousefi, S ^b  

^a Columbia University ^*  (United States)

^b The University of Texas at Dallas   (United States)

Author keywords

Brain image registration; Comparison of similarity measures; Normalized spatial mutual information; Similarity measures; Spatial mutual information

Indexed keywords

BRAIN IMAGES; DEGRADED IMAGES; IMAGE DEGRADATION; MUTUAL INFORMATIONS; NEW EVALUATION METHODS; PERFORMANCE METRICES; REGISTRATION PROCESS; SIMILARITY MEASURE;

MEDIA STREAMING; VISUAL COMMUNICATION;

IMAGE REGISTRATION;

EID: 84880146669     PISSN: 10473203     EISSN: 10959076     Source Type: Journal    
DOI: 10.1016/j.jvcir.2013.06.010     Document Type: Article

References (44)

1. C.A. Pelizzari, G.T.Y. Chen, D.R. Spelbring, R.R. Weichselbaum, and C.T. Chen Accurate three-dimensional registration of CT, PET and/or MR images of the brain J. Comput. Assisted Tomogr. 13 1 1989 20 26 (Pubitemid 19042086)
2. D.N. Levin, C.A. Pelizzari, G.T. Chen, C.T. Chen, and M.D. Cooper Retrospective geometric correlation of MR, CT, and PET images Radiology 169 3 1988 817 823
3. G. Borgefors Hierarchical chamfer matching: a parametric edge matching algorithm IEEE Trans. Pattern Anal. Mach. Intell. 10 6 1988 849 865
4. P.J. Besl, and H.D. McKay A method for registration of 3-D shapes IEEE Trans. Pattern Anal. Mach. Intell. 14 2 1992 239 256
5. J.P.W. Pluim, J.B.A. Maintz, and M.A. Viergever Mutual-information-based registration of medical images: a survey. IEEE Trans. Med. Imaging 22 8 2003 986 1004
6. A. Gholipour, N. Kehtarnavaz, R. Briggs, M. Devous, and K. Gopinath Brain functional localization: a survey of image registration techniques. IEEE Trans. Med. Imaging 26 4 2007 427 451 (Pubitemid 46527324)
7. P. Hellier, C. Barillot, I. Corouge, B. Gibaud, G. Le Goualher, L. Collins, A. Evans, G. Malandain, and N. Ayache Retrospective evaluation of inter-subject brain registration Lect. Notes Comput. Sci. 2208 2001 258 266
8. P. Hellier, J. Ashburner, and C. Barillot, Inter-subject Registration of Functional and Anatomical Data Using SPM, in: Proceedings of 5th Medical Image Computing and Computer Assisted Intervention Tokyo Japan Lecture Notes in Computer Science, vol. 2489, 2002, pp. 590-597.
9. P. Hellier, C. Barillot, I. Corouge, B. Gibaud, G. Le Goualher, D.L. Collins, A. Evans, G. Malandain, N. Ayache, G.E. Christensen, and H.J. Johnson Retrospective evaluation of intersubject brain registration IEEE Trans. Med. Imaging 22 9 2003 1120 1130
10. A. Klein, J. Andersson, B.A. Ardekani, J. Ashburner, B.B. Avants, M.-C. Chiang, G.E. Christensen, D.L. Collins, J. Gee, P. Hellier, J.H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R.P. Woods, J.J. Mann, and R. V Parsey Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration NeuroImage 46 3 2009 786 802
11. A. Klein, S.S. Ghosh, B. Avants, B.T.T. Yeo, B. Fischl, B. Ardekani, J.C. Gee, J.J. Mann, and R.V. Parsey Evaluation of volume-based and surface-based brain image registration methods NeuroImage 51 1 2010 214 220
12. D. Skerl, B. Likar, and F. Pernus A protocol for evaluation of similarity measures for rigid registration. IEEE Trans. Med. Imaging 25 6 2006 779 791 (Pubitemid 44143894)
13. D. Skerl, B. Likar, and F. Pernus A protocol for evaluation of similarity measures for non-rigid registration Med. Image Anal. 12 1 Feb. 2008 42 54 (Pubitemid 351189164)
14. S. Klein, M. Staring, K. Murphy, M.A. Viergever, and J.P.W. Pluim Elastix: a toolbox for intensity-based medical image registration IEEE Trans. Med. Imaging 29 1 2010 196 205
15. B.B. Avants, N.J. Tustison, G. Song, P.A. Cook, A. Klein, and J.C. Gee A reproducible evaluation of ANTs similarity metric performance in brain image registration NeuroImage 54 3 2011 2033 2044
16. Q.R. Razlighi, N. Kehtarnavaz, and A. Nosratinia Computation of image spatial entropy using quadrilateral Markov random field IEEE Trans. Image Process.: Publ. IEEE Signal Process. Soc. 18 12 2009 2629 2639
17. J.L. Rodgers, and W.A. Nicewander Thirteen ways to look at the correlation coefficient Am. Statistician 42 1 1988 59
18. R.A. Dutton, K.M. Hayashi, O.L. Lopez, H.J. Aizenstein, J.T. Becker, P.M. Thompson, A.W. Toga, Fluid registration of medical images using Jensen-Renyi divergence reveals 3D profile of brain atrophy in HIV/AIDS, in: 3rd IEEE International Symposium on Biomedical Imaging Macro to Nano 2006, vol. 2, issu 2, 2003, pp. 193-196. (Pubitemid 44732285)
19. K.J. Friston, J. Ashburner, C.D. Frith, J.B. Poline, J.D. Heather, and R.S.J. Frackowiak Spatial registration and normalization of images Human Brain Mapping 3 3 1995 165 189 (Pubitemid 3036540)
20. J.P.W. Pluim, J.B.A. Maintz, and M. a Viergever F-information measures in medical image registration IEEE Trans. Med. Imaging 23 12 2004 1508 1516
21. P. Viola, and W.M. Wells III Alignment by maximization of mutual information Int. J. Comput. Vision 24 2 1997 137 154 (Pubitemid 127506551)
22. F. Maes, A. Collignon, D. Vandermeulen, G. Marchal, and P. Suetens Multimodality image registration by maximization of mutual information IEEE Trans. Med. Imaging 16 2 1997 187 198 (Pubitemid 127762930)
23. A. Collignon, F. Maes, D. Delaere, D. Vandermeulen, P. Suetens, and G. Marchal Automated multi-modality image registration based on information theory Proc. Inf. Process. Med. Imaging 3 6 1995 263 274
24. C. Studholme, D.L.G. Hill, and D.J. Hawkes An overlap invariant entropy measure of 3D medical image alignment Pattern Recogn. 32 1 1999 71 86
25. A.C.S. Chung, W.I.M. Wells, A. Norbash, W.E.L. Grimson, Multi-modal image registration by minimizing Kullback-Leibler distance, in: MICCAI, LNCS, vol. 2489, 2002, pp. 525-532.
26. C. Studholme, D.L.G. Hill, D.J. Hawkes, Incorporating connected region labelling into automated image registration using mutual information, in: Proceedings of the Workshop on Mathematical Methods in Biomedical Image, Analysis, 1996, pp. 23-31.
27. D. Rueckert, M.J. Clarkson, D.L.G. Hill, and D.J. Hawkes Non-rigid registration using higher-order mutual information SPIE Proc. Med. Imaging 3979 2000 438 447
28. J. Lin, Z. Gao, B. Xu, Y. Cao, Z. Yingjian, The affection of grey levels on mutual information based medical image registration, in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, vol. 3, 2004, pp. 1747-1750. (Pubitemid 40035741)
29. C. Bei-Jing, L. Jun-Li, C. Gang, Study of medical image registration based on second-order mutual information, in: 2007 1st International Conference on Bioinformatics and Biomedical Engineering, No. 60672072, 2007, pp. 956-959.
30. J.P.W. Pluim, J.B. Maintz, and M.A. Viergever Image registration by maximization of combined mutual information and gradient information IEEE Trans. Med. Imaging 19 8 2000 809 814 (Pubitemid 32031207)
31. Q.R. Razlighi, M.T. Rahman, and N. Kehtarnavaz Fast computation methods for estimation of image spatial entropy J. Real-Time Image Process. 6 2 2011 137 142
32. A. Gholipour, N. Kehtarnavaz, R.W. Briggs, K.S. Gopinath, W. Ringe, A. Whittemore, S. Cheshkov, and K. Bakhadirov Validation of non-rigid registration between functional and anatomical magnetic resonance brain images IEEE Trans. Biomed. Eng. 55 2 Pt 1 2008 563 571
33. Y. Ma, M. Kamber, and A. Evans 3D simulation of PET brain images using segmented MRI data and positron tomograph characteristics Computer. Med. Imaging Graphics 17 4-5 1993 365 371 (Pubitemid 23337455)
34. D.L. Collins, A.P. Zijdenbos, V. Kollokian, J.G. Sled, N.J. Kabani, C.J. Holmes, and A.C. Evans Design and construction of a realistic digital brain phantom IEEE Trans. Med. Imaging 17 3 1998 463 468 (Pubitemid 128747700)
35. L. Zagorchev, and A. Goshtasby A comparative study of transformation functions for nonrigid image registration IEEE Trans. Image Process. 15 3 2006 529 538 (Pubitemid 43257553)
36. M. Holden A review of geometric transformations for nonrigid body registration IEEE Trans. Med. Imaging 27 1 2007 111 128
37. M. Unser, A. Aldroubi, and M. Eden B-spline signal processing: Part I Theory IEEE Trans. Signal Process. 41 2 1993 821 833 (Pubitemid 23609295)
38. P. Thevenaz, and M. Unser Optimization of mutual information for multiresolution image registration IEEE Trans. Image Process.: Publ. IEEE Signal Process. Soc. 9 12 2000 2083 2099
39. J. Gallier Curves and Surfaces in Geometric Modeling 2000 Morgan Kaufmann
40. E. Bardinet, L.D. Cohen, and N. Ayache A Parametric deformable model to fit unstructured 3D data Comput. Vision Image Understanding 71 1 1998 39 54 (Pubitemid 128420520)
41. W.M. Hsu, J.F. Hughes, and H. Kaufman Direct manipulation of free-form deformations Comput. Graphics 26 2 1992 177 184 (Pubitemid 23614127)
42. J. Declerck, J. Feldmar, M.L. Goris, and F. Betting Automatic registration and alignment on a template of cardiac stress and rest reoriented SPECT images IEEE Trans. Med. Imaging 16 6 1997 727 737 (Pubitemid 127770433)
43. D. Rueckert, L.I. Sonoda, C. Hayes, D.L. Hill, M.O. Leach, and D.J. Hawkes Nonrigid registration using free-form deformations: application to breast MR images. IEEE Trans. Med. Imaging 18 8 1999 712 721 (Pubitemid 32262025)
44. A.C. Bovik Handbook of image and video processing Society 3 2005 256 No. c