Evaluation of volume-based and surface-based brain image registration methods

NeuroImage

Volumn 51, Issue 1, 2010, Pages 214-220

  Klein, Arno ^a   Ghosh, Satrajit S ^b   Avants, Brian ^c   Yeo, B T T ^d   Fischl, Bruce ^e,f,g   Ardekani, Babak ^h,i   Gee, James C ^c   Mann, J J ^a   Parsey, Ramin V ^a  

^a NEW YORK STATE PSYCHIATRIC INSTITUTE   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^c UNIVERSITY OF PENNSYLVANIA   (United States)

^d HARVARD UNIVERSITY   (United States)

^e MASSACHUSETTS GENERAL HOSPITAL   (United States)

^f HARVARD MEDICAL SCHOOL   (United States)

^g MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^h NATHAN S KLINE INSTITUTE FOR PSYCHIATRIC RESEARCH   (United States)

ⁱ NEW YORK UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; ALGORITHM; ALZHEIMER DISEASE; ARTICLE; BRAIN SIZE; CLINICAL ARTICLE; CONTROLLED STUDY; DIAGNOSTIC ACCURACY; FEMALE; HUMAN; IMAGE ANALYSIS; IMAGE PROCESSING; IMAGE RECONSTRUCTION; MALE; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL;

ADULT; ALGORITHMS; BRAIN; FEMALE; HEAD; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MAGNETIC RESONANCE IMAGING; MALE; ORGAN SIZE; SOFTWARE; YOUNG ADULT;

EID: 77950529506     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2010.01.091     Document Type: Article

References (25)

1. Allen J.S., Bruss J., Mehta S., Grabowski T., Kice Brown C., Damasio H. Effects of spatial transformation on regional brain volume estimates. NeuroImage 2008, 42(2):535-547. (August 15). 10.1016/j.neuroimage.2008.05.047.
2. Anticevic A., Dierker D.L., Gillespie S.K., Repovs G., Csernansky J.G., Van Essen D.C., Barchm D.M. Comparing surface-based and volume-based analyses of functional neuroimaging data in patients with schizophrenia. Neuroimage 2008, 41(3):835-848.
3. Ardekani B., Braun M., Hutton B.F., Kanno I., Iida H. A fully automatic multimodality image registration algorithm. J. Comput. Assist. Tomogr. 1995, 19(4):615-623. (August).
4. Ardekani B.A., Guckemus S., Bachman A., Hoptman M.J., Wojtaszek M., Nierenberg J. Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans. J. Neurosci. Methods 2005, 142(1):67-76. (March 15). 10.1016/j.jneumeth.2004.07.014.
5. Ashburner J., Friston K.J. Nonlinear spatial normalization using basis functions. Hum. Brain Mapp. 1999, 7(4):254-266. 10.1002/(SICI)1097-0193(1999)7:4<254::AID-HBM4>3.0.CO;2-G.
6. Avants B.B., Epstein C.L., Grossman M., Gee J.C. Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Med. Image Anal. 2008, 12(1):26-41.
7. Avants, B.B., Yushkevich, P., Pluta, J., Minkoff, D., Korczykowski, M., Detre, J., Gee, J.C., 2010. The optimal template effect in hippocampus studies of diseased populations. Neuroimage 49 (3), 2457-2466.
8. Cachier P., Bardinet E., Dormont D., Pennec X., Ayache N. Iconic feature based nonrigid registration: the PASHA algorithm. Comput. Vis. Image Underst. 2003, 89(2-3):272-298. 10.1016/S1077-3142(03)00002-X.
9. Cointepas Y., Mangin J.-F., Garnero L., Poline J.-B., Benali H. BrainVISA: software platform for visualization and analysis of multi-modality brain data. NeuroImage 2001, 13(6):98. (June).
10. Crum W.R., Camara O., Rueckert D., Bhatia K.K., Jenkinson M., Hill D.L.G. Generalised overlap measures for assessment of pairwise and groupwise image registration and segmentation. Med. Image Comput. Comput.-Assist. Interv.: MICCAI 2005, 8(Pt. 1):99-106.
11. Desai R., Liebenthal E., Possing E.T., Waldron E., Binder J.R. Volumetric vs. surface-based alignment for localization of auditory cortex activation. NeuroImage 2005, 26(4):1019-1029. (July 15). 10.1016/j.neuroimage.2005.03.024.
12. Desikan R.S., Segonne F., Fischl B., Quinn B.T., Dickerson B.C., Blacker D., Buckner R.L., et al. An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. NeuroImage 2006, 31(3):968-980. (July 1).
13. Dubuisson, M.-P., and Jain, A.K., 1994. A modified Hausdorff distance for object matching. In Pattern Recognition, 1994. Vol. 1-Conference A: Computer Vision & Image Processing. Proceedings of the 12th IAPR International Conference on, 1:566-568 vol. 1. doi:10.1109/ICPR.1994.576361.
14. Evans, A.C., Collins, D.L., Mills, S.R., Brown, E.D., Kelly, R.L., and Peters, T.M., 1993. 3D statistical neuroanatomical models from 305 MRI volumes. In Nuclear Science Symposium & Medical Imaging Conference: 1993 IEEE Conference Record, ed. Lowell Klaisner, 1813-1817. IEEE, October. http://ieeexplore.ieee.org/xpl/abs_free.jsp%3FarNumber%3D373602.
15. Fischl B., Sereno M.I., Tootell R.B., Dale A.M. High-resolution intersubject averaging and a coordinate system for the cortical surface. Hum. Brain Mapp. 1999, 8(4):272-284.
16. Fischl B., Rajendran N., Busa E., Augustinack J., Hinds O., Thomas Yeo B.T., Mohlberg H., Amunts K., Zilles K. Cortical folding patterns and predicting cytoarchitecture. Cereb. Cortex (New York, N.Y.: 1991) 2008, 18(8):1973-1980. (August). 10.1093/cercor/bhm225.
17. Hinds O.P., Rajendran N., Polimeni J.R., Augustinack J.C., Wiggins G., Wald L.L., Diana Rosas H., Potthast A., Schwartz E.L., Fischl B. Accurate prediction of V1 location from cortical folds in a surface coordinate system. NeuroImage 2008, 39(4):1585-1599. (February 15). 10.1016/j.neuroimage.2007.10.033.
18. Klein A., Andersson J., Ardekani B.A., Ashburner J., Avants B., Chiang M.-C., Christensen G.E., et al. Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage 2009, 46(3):786-802. (July 1). 10.1016/j.neuroimage.2008.12.037.
19. Menke, J., and Martinez, T.R., 2004. Using permutations instead of Student's t distribution for p-values in paired-difference algorithm comparisons. In Neural Networks, 2004. Proceedings. 2004 IEEE International Joint Conference on, 2:1331-1335 vol.2. Vol. 2. doi:10.1109/IJCNN.2004.1380138.
20. Rademacher J., Caviness V.S., Steinmetz H., Galaburda A.M. Topographical variation of the human primary cortices: implications for neuroimaging, brain mapping, and neurobiology. Cereb. Cortex 1993, 3(4):313-329. (July 1). 10.1093/cercor/3.4.313.
21. Shattuck D.W., Mirza M., Adisetiyo V., Hojatkashani C., Salamon G., Narr K.L., Poldrack R.A., Bilder R.M., Toga A.W. Construction of a 3D probabilistic atlas of human cortical structures. NeuroImage 2008, 39(3):1064-1080. (February 1).
22. Thirion J.-P. Image matching as a diffusion process: an analogy with Maxwell's demons. Med. Image Anal. 1998, 2(3):243-260. (September). 10.1016/S1361-8415(98)80022-4.
23. Thompson P., Toga A.W. A surface-based technique for warping 3-dimensional images of the brain. IEEE Trans. Med. Imag. 1996, 15(4):402-417.
24. Van Essen D.C., Drury H.A., Dickson J., Harwell J., Hanlon D., Anderson C.H. An integrated software suite for surface-based analyses of cerebral cortex. J. Am. Med. Inform. Assoc.: JAMIA 2001, 8(5):443-459.
25. Yeo B.T.T., Sabuncu M.R., Vercauteren T., Ayache N., Fischl B., Golland P. Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. IEEE Transactions Medical Imaging 2010, 29(3):650-668.