메뉴 건너뛰기




Volumn 8, Issue 7, 2013, Pages

Evaluation of Reference Genes for RT-qPCR Expression Studies in Hop (Humulus lupulus L.) during Infection with Vascular Pathogen Verticillium albo-atrum

Author keywords

[No Author keywords available]

Indexed keywords

GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE;

EID: 84880078469     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0068228     Document Type: Article
Times cited : (37)

References (40)
  • 1
    • 17344376585 scopus 로고    scopus 로고
    • Characterization of Verticillium albo-atrum field isolates using pathogenicity data and AFLP analysis
    • Radisek S, Jakse J, Simoncic A, Javornik B, (2003) Characterization of Verticillium albo-atrum field isolates using pathogenicity data and AFLP analysis. Plant Disease 87: 633-638.
    • (2003) Plant Disease , vol.87 , pp. 633-638
    • Radisek, S.1    Jakse, J.2    Simoncic, A.3    Javornik, B.4
  • 2
    • 84878362331 scopus 로고    scopus 로고
    • Genotyping of Verticillum pathotypes in the hallertau: Basic findings to assess the risk of Verticillium infections
    • In: Seigner E (ed), Leon, Spain
    • Seefelder S, Seigner E, Niedermeier E, Radišek S, Javornik B, editors (2009) Genotyping of Verticillum pathotypes in the hallertau: Basic findings to assess the risk of Verticillium infections. In: Seigner E (ed) CICH- IHB- IHGC International Hop Growers' Convention, Leon, Spain, 67-69. Leon, Spain. 67-69 p.
    • (2009) CICH - IHB - IHGC International Hop Growers' Convention , pp. 67-69
    • Seefelder, S.1    Seigner, E.2    Niedermeier, E.3    Radišek, S.4    Javornik, B.5
  • 3
    • 79959266478 scopus 로고    scopus 로고
    • Screening of valid reference genes for real-time RT-PCR data normalization in Hevea brasiliensis and expression validation of a sucrose transporter gene HbSUT3
    • Li HP, Qin YX, Xiao XH, Tang CR, (2011) Screening of valid reference genes for real-time RT-PCR data normalization in Hevea brasiliensis and expression validation of a sucrose transporter gene HbSUT3. Plant Science 181: 132-139.
    • (2011) Plant Science , vol.181 , pp. 132-139
    • Li, H.P.1    Qin, Y.X.2    Xiao, X.H.3    Tang, C.R.4
  • 4
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology 3.
    • (2002) Genome Biology , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5
  • 5
    • 67650930085 scopus 로고    scopus 로고
    • Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references
    • Guenin S, Mauriat M, Pelloux J, Van Wuytswinkel O, Bellini C, et al. (2009) Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references. Journal of Experimental Botany 60: 487-493.
    • (2009) Journal of Experimental Botany , vol.60 , pp. 487-493
    • Guenin, S.1    Mauriat, M.2    Pelloux, J.3    Van Wuytswinkel, O.4    Bellini, C.5
  • 6
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR, (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiology 139: 5-17.
    • (2005) Plant Physiology , vol.139 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.R.5
  • 7
    • 42149126123 scopus 로고    scopus 로고
    • Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations
    • Remans T, Smeets K, Opdenakker K, Mathijsen D, Vangronsveld J, et al. (2008) Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations. Planta 227: 1343-1349.
    • (2008) Planta , vol.227 , pp. 1343-1349
    • Remans, T.1    Smeets, K.2    Opdenakker, K.3    Mathijsen, D.4    Vangronsveld, J.5
  • 8
    • 2542466265 scopus 로고    scopus 로고
    • Validation of a rice specific gene, sucrose phosphate synthase, used as the endogenous reference gene for qualitative and real-time quantitative PCR detection of transgenes
    • Ding JY, Jia JW, Yang LT, Wen HB, Zhang CM, et al. (2004) Validation of a rice specific gene, sucrose phosphate synthase, used as the endogenous reference gene for qualitative and real-time quantitative PCR detection of transgenes. Journal of Agricultural and Food Chemistry 52: 3372-3377.
    • (2004) Journal of Agricultural and Food Chemistry , vol.52 , pp. 3372-3377
    • Ding, J.Y.1    Jia, J.W.2    Yang, L.T.3    Wen, H.B.4    Zhang, C.M.5
  • 9
    • 33646854724 scopus 로고    scopus 로고
    • Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR
    • Jain M, Nijhawan A, Tyagi AK, Khurana JP, (2006) Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochemical and Biophysical Research Communications 345: 646-651.
    • (2006) Biochemical and Biophysical Research Communications , vol.345 , pp. 646-651
    • Jain, M.1    Nijhawan, A.2    Tyagi, A.K.3    Khurana, J.P.4
  • 10
    • 5444258598 scopus 로고    scopus 로고
    • Validating internal controls for quantitative plant gene expression studies
    • Brunner A, Yakovlev I, Strauss S (2004) Validating internal controls for quantitative plant gene expression studies. BMC Plant Biol 4.
    • (2004) BMC Plant Biol , vol.4
    • Brunner, A.1    Yakovlev, I.2    Strauss, S.3
  • 11
    • 27144456802 scopus 로고    scopus 로고
    • Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress
    • Nicot N, Hausman JF, Hoffmann L, Evers D, (2005) Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. Journal of Experimental Botany 56: 2907-2914.
    • (2005) Journal of Experimental Botany , vol.56 , pp. 2907-2914
    • Nicot, N.1    Hausman, J.F.2    Hoffmann, L.3    Evers, D.4
  • 12
    • 47149104723 scopus 로고    scopus 로고
    • Validation of internal control for gene expression study in soybean by quantitative real-time PCR
    • Jian B, Liu B, Bi YR, Hou WS, Wu CX, et al. (2008) Validation of internal control for gene expression study in soybean by quantitative real-time PCR. Bmc Molecular Biology 9.
    • (2008) Bmc Molecular Biology , vol.9
    • Jian, B.1    Liu, B.2    Bi, Y.R.3    Hou, W.S.4    Wu, C.X.5
  • 13
    • 85167520149 scopus 로고    scopus 로고
    • Identification of four soybean reference genes for gene expression normalization
    • Libault M, Thibivilliers S, Bilgin D, Radwan O, Benitez M, et al. (2008) Identification of four soybean reference genes for gene expression normalization. The Plant Genome 1: 44-54.
    • (2008) The Plant Genome , vol.1 , pp. 44-54
    • Libault, M.1    Thibivilliers, S.2    Bilgin, D.3    Radwan, O.4    Benitez, M.5
  • 14
    • 58849120561 scopus 로고    scopus 로고
    • Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions
    • Barsalobres-Cavallari CF, Severino FE, Maluf MP, Maia IG (2009) Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions. Bmc Molecular Biology 10.
    • (2009) Bmc Molecular Biology , vol.10
    • Barsalobres-Cavallari, C.F.1    Severino, F.E.2    Maluf, M.P.3    Maia, I.G.4
  • 15
    • 18944381809 scopus 로고    scopus 로고
    • Comparison of reference genes for quantitative real-time polymerase chain reaction analysis of gene expression in sugarcane
    • Hayati MI, Robert SS, Rosanne EC, Graham DB, Donald JM, et al. (2004) Comparison of reference genes for quantitative real-time polymerase chain reaction analysis of gene expression in sugarcane. Plant Mol Biol Report 22: 325-337.
    • (2004) Plant Mol Biol Report , vol.22 , pp. 325-337
    • Hayati, M.I.1    Robert, S.S.2    Rosanne, E.C.3    Graham, D.B.4    Donald, J.M.5
  • 16
    • 58549086530 scopus 로고    scopus 로고
    • Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process
    • Exposito-Rodriguez M, Borges AA, Borges-Perez A, Perez JA (2008) Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process. Bmc Plant Biology 8.
    • (2008) Bmc Plant Biology , vol.8
    • Exposito-Rodriguez, M.1    Borges, A.A.2    Borges-Perez, A.3    Perez, J.A.4
  • 17
    • 33751234803 scopus 로고    scopus 로고
    • An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
    • Reid KE, Olsson N, Schlosser J, Peng F, Lund ST (2006) An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. Bmc Plant Biology 6.
    • (2006) Bmc Plant Biology , vol.6
    • Reid, K.E.1    Olsson, N.2    Schlosser, J.3    Peng, F.4    Lund, S.T.5
  • 18
    • 43549093139 scopus 로고    scopus 로고
    • EST analysis of hop glandular trichomes identifies an O-methyltransferase that catalyzes the biosynthesis of xanthohumol
    • Nagel J, Culley LK, Lu YP, Liu EW, Matthews PD, et al. (2008) EST analysis of hop glandular trichomes identifies an O-methyltransferase that catalyzes the biosynthesis of xanthohumol. Plant Cell 20: 186-200.
    • (2008) Plant Cell , vol.20 , pp. 186-200
    • Nagel, J.1    Culley, L.K.2    Lu, Y.P.3    Liu, E.W.4    Matthews, P.D.5
  • 19
    • 47749092142 scopus 로고    scopus 로고
    • DNA sequence and expression variation of hop (Humulus lupulus) valerophenone synthase (VPS), a key gene in bitter acid biosynthesis
    • Castro CB, Whittock LD, Whittock SP, Leggett G, Koutoulis A, (2008) DNA sequence and expression variation of hop (Humulus lupulus) valerophenone synthase (VPS), a key gene in bitter acid biosynthesis. Annals of Botany 102: 265-273.
    • (2008) Annals of Botany , vol.102 , pp. 265-273
    • Castro, C.B.1    Whittock, L.D.2    Whittock, S.P.3    Leggett, G.4    Koutoulis, A.5
  • 20
    • 34948868197 scopus 로고    scopus 로고
    • HIMyb3, a putative regulatory factor in hop (Humulus lupulus L.), shows diverse biological effects in heterologous transgenotes
    • Matousek J, Kocabek T, Patzak J, Skopek J, Maloukh L, et al. (2007) HIMyb3, a putative regulatory factor in hop (Humulus lupulus L.), shows diverse biological effects in heterologous transgenotes. Journal of Agricultural and Food Chemistry 55: 7767-7776.
    • (2007) Journal of Agricultural and Food Chemistry , vol.55 , pp. 7767-7776
    • Matousek, J.1    Kocabek, T.2    Patzak, J.3    Skopek, J.4    Maloukh, L.5
  • 23
    • 0037134017 scopus 로고    scopus 로고
    • A technique whose time has come
    • Walker NJ, (2002) A technique whose time has come. Science 296: 557-559.
    • (2002) Science , vol.296 , pp. 557-559
    • Walker, N.J.1
  • 24
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen CL, Jensen JL, Orntoft TF, (2004) Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Research 64: 5245-5250.
    • (2004) Cancer Research , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 25
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
    • Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP, (2004) Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper- Excel-based tool using pair-wise correlations. Biotechnology Letters 26: 509-515.
    • (2004) Biotechnology Letters , vol.26 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 26
    • 33750295976 scopus 로고    scopus 로고
    • Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR
    • Silver N, Best S, Jiang J, Thein SL (2006) Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR. Bmc Molecular Biology 7.
    • (2006) Bmc Molecular Biology , vol.7
    • Silver, N.1    Best, S.2    Jiang, J.3    Thein, S.L.4
  • 27
    • 47249141242 scopus 로고    scopus 로고
    • The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants
    • Gutierrez L, Mauriat M, Guenin S, Pelloux J, Lefebvre JF, et al. (2008) The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants. Plant Biotechnology Journal 6: 609-618.
    • (2008) Plant Biotechnology Journal , vol.6 , pp. 609-618
    • Gutierrez, L.1    Mauriat, M.2    Guenin, S.3    Pelloux, J.4    Lefebvre, J.F.5
  • 28
    • 80052585787 scopus 로고    scopus 로고
    • Reference genes for quantitative reverse transcription-polymerase chain reaction expression studies in wild and cultivated peanut
    • Morgante C, Guimaraes P, Martins A, Araujo A, Leal-Bertioli S, et al. (2011) Reference genes for quantitative reverse transcription-polymerase chain reaction expression studies in wild and cultivated peanut. BMC Research Notes 4: 339.
    • (2011) BMC Research Notes , vol.4 , pp. 339
    • Morgante, C.1    Guimaraes, P.2    Martins, A.3    Araujo, A.4    Leal-Bertioli, S.5
  • 29
    • 0034807289 scopus 로고    scopus 로고
    • Control genes in quantitative molecular biological techniques: the variability of invariance
    • Stürzenbaum SR, Kille P, (2001) Control genes in quantitative molecular biological techniques: the variability of invariance. Comp Biochem Physiol B Biochem Mol Biol 130: 281-289.
    • (2001) Comp Biochem Physiol B Biochem Mol Biol , vol.130 , pp. 281-289
    • Stürzenbaum, S.R.1    Kille, P.2
  • 31
    • 84864354623 scopus 로고    scopus 로고
    • Arsenal of elevated defense proteins fails to protect tomato against Verticillium dahliae
    • Robb J, Shittu H, Soman KV, Kurosky A, Nazar RN, (2012) Arsenal of elevated defense proteins fails to protect tomato against Verticillium dahliae. Planta 236: 623-633.
    • (2012) Planta , vol.236 , pp. 623-633
    • Robb, J.1    Shittu, H.2    Soman, K.V.3    Kurosky, A.4    Nazar, R.N.5
  • 32
    • 80051851919 scopus 로고    scopus 로고
    • Identification of suitable internal control genes for quantitative real-time PCR expression analyses in peanut (Arachis hypogaea)
    • Brand Y, Hovav R, (2010) Identification of suitable internal control genes for quantitative real-time PCR expression analyses in peanut (Arachis hypogaea). Peanut Sci 37: 12-19.
    • (2010) Peanut Sci , vol.37 , pp. 12-19
    • Brand, Y.1    Hovav, R.2
  • 33
    • 80052265445 scopus 로고    scopus 로고
    • Identification of suitable reference genes for studying gene expression in cucumber plants subjected to abiotic stress and growth regulators
    • Migocka M, Papierniak A, (2011) Identification of suitable reference genes for studying gene expression in cucumber plants subjected to abiotic stress and growth regulators. Molecular Breeding 28: 343-357.
    • (2011) Molecular Breeding , vol.28 , pp. 343-357
    • Migocka, M.1    Papierniak, A.2
  • 34
    • 79951521045 scopus 로고    scopus 로고
    • Identification and Validation of Reference Genes for Normalization of Transcripts from Virus-Infected Arabidopsis thaliana
    • Lilly ST, Drummond RSM, Pearson MN, MacDiarmid RM, (2011) Identification and Validation of Reference Genes for Normalization of Transcripts from Virus-Infected Arabidopsis thaliana. Molecular Plant-Microbe Interactions 24: 294-304.
    • (2011) Molecular Plant-Microbe Interactions , vol.24 , pp. 294-304
    • Lilly, S.T.1    Drummond, R.S.M.2    Pearson, M.N.3    MacDiarmid, R.M.4
  • 35
    • 55549130497 scopus 로고    scopus 로고
    • Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection
    • Ascencio-Ibanez JT, Sozzani R, Lee TJ, Chu TM, Wolfinger RD, et al. (2008) Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiology 148: 436-454.
    • (2008) Plant Physiology , vol.148 , pp. 436-454
    • Ascencio-Ibanez, J.T.1    Sozzani, R.2    Lee, T.J.3    Chu, T.M.4    Wolfinger, R.D.5
  • 36
    • 0032127570 scopus 로고    scopus 로고
    • The NADH-specific enoyl acyl carrier protein reductase: Characterization of a housekeeping gene involved in storage lipid synthesis in seeds of Arabidopsis and other plant species
    • de Boer GJ, Kater MM, Fawcett T, Slabas AR, Nijkamp HJJ, et al. (1998) The NADH-specific enoyl acyl carrier protein reductase: Characterization of a housekeeping gene involved in storage lipid synthesis in seeds of Arabidopsis and other plant species. Plant Physiology and Biochemistry 36: 473-486.
    • (1998) Plant Physiology and Biochemistry , vol.36 , pp. 473-486
    • de Boer, G.J.1    Kater, M.M.2    Fawcett, T.3    Slabas, A.R.4    Nijkamp, H.J.J.5
  • 37
    • 0033555338 scopus 로고    scopus 로고
    • The DEAD box RNA helicase family in Arabidopsis thaliana
    • Aubourg S, Kreis M, Lecharny A, (1999) The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Research 27: 628-636.
    • (1999) Nucleic Acids Research , vol.27 , pp. 628-636
    • Aubourg, S.1    Kreis, M.2    Lecharny, A.3
  • 38
    • 13444310779 scopus 로고    scopus 로고
    • DEAD-box RNA helicases in Arabidopsis thaliana: establishing a link between quantitative expression, gene structure and evolution of a family of genes
    • Mingam A, Toffano-Nioche C, Brunaud V, Boudet N, Kreis M, et al. (2004) DEAD-box RNA helicases in Arabidopsis thaliana: establishing a link between quantitative expression, gene structure and evolution of a family of genes. Plant Biotechnology Journal 2: 401-415.
    • (2004) Plant Biotechnology Journal , vol.2 , pp. 401-415
    • Mingam, A.1    Toffano-Nioche, C.2    Brunaud, V.3    Boudet, N.4    Kreis, M.5
  • 39
    • 36248937856 scopus 로고    scopus 로고
    • STRESS RESPONSE SUPPRESSOR1 and STRESS RESPONSE SUPPRESSOR2, two DEAD-box RNA helicases that attenuate Arabidopsis responses to multiple abiotic stresses
    • Kant P, Kant S, Gordon M, Shaked R, Barak S, (2007) STRESS RESPONSE SUPPRESSOR1 and STRESS RESPONSE SUPPRESSOR2, two DEAD-box RNA helicases that attenuate Arabidopsis responses to multiple abiotic stresses. Plant Physiol 145: 814-830.
    • (2007) Plant Physiol , vol.145 , pp. 814-830
    • Kant, P.1    Kant, S.2    Gordon, M.3    Shaked, R.4    Barak, S.5
  • 40
    • 38349065355 scopus 로고    scopus 로고
    • A strategy for designing multi-taxa specific reference gene systems. Example of application - ppi phosphofructokinase (ppi-PPF) used for the detection and quantification of three taxa: Maize (Zea mays), cotton (Gossypium hirsutum) and rice (Oryza sativa)
    • Chaouachi M, Giancola S, Romaniuk M, Laval V, Bertheau Y, et al. (2007) A strategy for designing multi-taxa specific reference gene systems. Example of application- ppi phosphofructokinase (ppi-PPF) used for the detection and quantification of three taxa: Maize (Zea mays), cotton (Gossypium hirsutum) and rice (Oryza sativa). Journal of Agricultural and Food Chemistry 55: 8003-8010.
    • (2007) Journal of Agricultural and Food Chemistry , vol.55 , pp. 8003-8010
    • Chaouachi, M.1    Giancola, S.2    Romaniuk, M.3    Laval, V.4    Bertheau, Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.