Origin of asymmetry at the intersubunit interfaces of V1-ATPase from thermus thermophilus

Journal of Molecular Biology

Volumn 425, Issue 15, 2013, Pages 2699-2708

  Nagamatsu, Yumemi ^a   Takeda, Kazuki ^a   Kuranaga, Takeshi ^a   Numoto, Nobutaka ^a   Miki, Kunio ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

ATPase rigid body; conformational change; crystal structure rotary; motion subunit interface

Indexed keywords

ADENOSINE TRIPHOSPHATASE; UNCLASSIFIED DRUG; V 1 TYPE ADENOSINE TRIPHOSPHATASE;

ARTICLE; CARBOXY TERMINAL SEQUENCE; CATALYSIS; CONFORMATIONAL TRANSITION; ELECTRON MICROSCOPY; ENTEROCOCCUS HIRAE; ENZYME STRUCTURE; PRIORITY JOURNAL; PROTEIN INTERACTION; THERMUS THERMOPHILUS; X RAY CRYSTALLOGRAPHY;

BACTERIA (MICROORGANISMS); ENTEROCOCCUS HIRAE; THERMUS THERMOPHILUS;

EID: 84879955381     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2013.04.022     Document Type: Article

References (35)

1. M. Yoshida, E. Muneyuki, and T. Hisabori ATP synthase - a marvellous rotary engine of the cell Nat. Rev. Mol. Cell Biol. 2 2001 669 677
2. S.P. Muench, J. Trinick, and M.A. Harrison Structural divergence of the rotary ATPases Q. Rev. Biophys. 44 2011 311 356
3. M. Forgac Vacuolar ATPases: rotary proton pumps in physiology and pathophysiology Nat. Rev. Mol. Cell Biol. 8 2007 917 929
4. K. Yokoyama, T. Oshima, and M. Yoshida Thermus thermophilus membrane-associated ATPase. Indication of a eubacterial V-type ATPase J. Biol. Chem. 265 1990 21946 21950
5. 0) BioEssays 30 2008 1096 1109
6. 1-motor Proc. Natl Acad. Sci. USA 102 2005 17929 17933
7. +-ATPase/synthase with an essentially drag-free probe Nat. Commun. 2 2011 233
8. 1-ATPase J. Biol. Chem. 287 2012 28327 28335
9. +-ATPase/synthase by electron microscopy Structure 12 2004 1789 1798
10. Z. Zhang, Y. Zheng, H. Mazon, E. Milgrom, N. Kitagawa, and E. Kish-Trier Structure of the yeast vacuolar ATPase J. Biol. Chem. 283 2008 35983 35995
11. S.P. Muench, M. Huss, C.F. Song, C. Phillips, H. Wieczorek, J. Trinick, and M.A. Harrison Cryo-electron microscopy of the vacuolar ATPase motor reveals its mechanical and regulatory complexity J. Mol. Biol. 386 2008 989 999
12. M. Diepholz, D. Venzke, S. Prinz, C. Batisse, B. Flörchinger, and M. Rössle A different conformation for EGC stator subcomplex in solution and in the assembled yeast V-ATPase: possible implications for regulatory disassembly Structure 16 2008 1789 1798
13. O motor Proc. Natl Acad. Sci. USA 107 2010 1367 1372
14. +-driven ATP synthase Nature 2012 214 218
15. S. Benlekbir, S.A. Bueler, and J.L. Rubinstein Structure of the vacuolar-type ATPase from Saccharomyces cerevisiae at 11-Å resolution Nat. Struct. Mol. Biol. 19 2012 1356 1363
16. H. Makyio, R. Iino, C. Ikeda, H. Imamura, M. Tamakoshi, and M. Iwata Structure of a central stalk subunit F of prokaryotic V-type ATPase/synthase from Thermus thermophilus EMBO J. 24 2005 3974 3983
17. 3 complex of V-ATPase from Thermus thermophilus EMBO J. 28 2009 3771 3779
18. 1-ATPase EMBO Rep. 10 2009 1228 1234
19. 1-ATPase from bovine heart mitochondria Nature 370 1994 621 628
20. 1-ATPase based on asymmetric crystal structures Nature 493 2013 703 707
21. S. Saijo, S. Arai, K.M. Hossain, I. Yamato, K. Suzuki, and Y. Kakinuma Crystal structure of the central axis DF complex of the prokaryotic V-ATPase Proc. Natl Acad. Sci. USA 108 2011 19955 19960
22. G.F. Schröder, M. Levitt, and A.T. Brünger Super-resolution biomolecular crystallography with low-resolution data Nature 464 2010 1218 1222
23. 1 ATPase in the absence of bound nucleotides J. Biol. Chem. 284 2009 10546 10551
24. 1-ATPase from the thermophilic Bacillus PS3 is a symmetric trimer Structure 5 1997 825 836
25. T. Uchihashi, R. Iino, T. Ando, and H. Noji High-speed atomic force microscopy reveals rotary catalysis of rotorless F-ATPase Science 333 2011 755 758
26. 1-ATPase: crucial importance of the water entropy effect J. Am. Chem. Soc. 133 2011 4030 4039
27. 1-ATPase Nature 386 1997 299 302
28. 1-ATPase Nature 410 2001 898 904
29. Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276 1997 307 326
30. T.C. Terwilliger, and J. Berendzen Automated MAD and MIR structure solution Acta Crystallogr., Sect. D: Biol. Crystallogr. 55 1999 849 861
31. T.C. Terwilliger Maximum-likelihood density modification Acta Crystallogr., Sect. D: Biol. Crystallogr. 56 2000 965 972
32. P. Emsley, and K. Cowtan Coot: model-building tools for molecular graphics Acta Crystallogr., Sect. D: Biol. Crystallogr. 60 2004 2126 2132
33. A.T. Brünger, P.D. Adams, G.M. Clore, W.L. DeLano, P. Gros, and R.W. Grosse-Kunstleve Crystallography & NMR system: a new software suite for macromolecular structure determination Acta Crystallogr., Sect. D: Biol. Crystallogr. 54 1998 905 921
34. R.A. Laskowski, M.W. MacArthur, D.S. Moss, and J.M. Thornton PROCHECK: a program to check the stereochemical quality of protein structures J. Appl. Crystallogr. 26 1993 283 291
35. W.L. DeLano The PyMOL Molecular Graphics System 2002 DeLano Scientific San Carlos, CA www.pymol.org