Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase

EMBO Reports

Volumn 10, Issue 11, 2009, Pages 1228-1234

  Numoto, Nobutaka ^a,c   Hasegawa, Yu ^a   Takeda, Kazuki ^a   Miki, Kunio ^a,b  

^a KYOTO UNIVERSITY   (Japan)

^b Harima Institute ^*  (Japan)

^c KANAZAWA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE;

ARTICLE; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; ENZYME SUBUNIT; NONHUMAN; NUCLEOTIDE BINDING SITE; PRIORITY JOURNAL; PROTEIN INTERACTION; PROTEIN QUATERNARY STRUCTURE; STRUCTURE ANALYSIS; THERMUS THERMOPHILUS;

BINDING SITES; CATALYTIC DOMAIN; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; MOLECULAR CONFORMATION; MOLECULAR MOTOR PROTEINS; NUCLEOTIDES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, QUATERNARY; PROTON-TRANSLOCATING ATPASES; THERMUS THERMOPHILUS; VACUOLAR PROTON-TRANSLOCATING ATPASES;

PROKARYOTA; THERMUS THERMOPHILUS;

EID: 70449115562     PISSN: 1469221X     EISSN: 14693178     Source Type: Journal    
DOI: 10.1038/embor.2009.202     Document Type: Article

References (28)

1. +-ATPase/synthase by electron microscopy. Structure 12: 1789-1798
2. Forgac M (2007) Vacuolar ATPases: Rotary proton pumps in physiology and pathophysiology. Nat Rev Mol Cell Biol 8: 917-929
3. 1-ATPase at 2.4 Å resolution. Nat Struct Biol 7: 1055-1061
4. 0). Bioessays 30: 1096-1109
5. Hirata T, Iwamoto-Kihara A, Sun-Wada GH, Okajima T, Wada Y, Futai M (2003) Subunit rotation of vacuolar-type proton pumping ATPase: Relative rotation of the G and C subunits. J Biol Chem 278: 23714-23719
6. 1-ATPase. Proc Natl Acad Sci USA 100: 2312-2315
7. 1-ATPase promotes ATPase activity but is not necessary for rotation. J Biol Chem 279: 18085-18090
8. 1-motor. Proc Natl Acad Sci USA 102: 17929-17933
9. Iwata M et al (2004) Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase. Proc Natl Acad Sci USA 101: 59-64
10. 1 ATPase in the absence of bound nucleotides. J Biol Chem 284: 10546-10551
11. 0 ATP synthase in complex with adenosine diphosphate. Acta Crystallogr D Biol Crystallogr 64: 1110-1115
12. Maegawa Y, Morita H, Iyaguchi D, Yao M, Watanabe N, Tanaka I (2006) Structure of the catalytic nucleotide-binding subunit A of A-type ATP synthase from Pyrococcus horikoshii reveals a novel domain related to the peripheral stalk. Acta Crystallogr D Biol Crystallogr 62 483-488
13. Makyio H et al (2005) Structure of a central stalk subunit F of prokaryotic V-type ATPase/synthase from Thermus thermophilus. EMBO J 24: 3974-3983
14. 1-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis. Cell 106 331-341
15. Mulkidjanian AY, Makarova KS, Galperin MY, Koonin EV (2007) Inventing the dynamo machine: The evolution of the F-type and V-type ATPases. Nat Rev Microbiol 5: 892-899
16. Noji H, Yasuda R, Yoshida M, Kinosita K Jr (1997) Direct observation of the rotation of F1-ATPase. Nature 386: 299-302
17. Numoto N, Kita A, Miki K (2004) Structure of the C subunit of V-type ATPase from Thermus thermophilus at 1.85 Å resolution. Acta Crystallogr D Biol Crystallogr 60: 810-815
18. Schäfer G, Meyering-Vos M (1992) F-type or V-type? The chimeric nature of the archaebacterial ATP synthase. Biochim Biophys Acta 1101: 232-235
19. o subunits A and B. J Mol Biol 358: 725-740
20. 1 motor: Cleavage of ATP at the catalytic site occurs in 1ms before 40 degree substep rotation. Proc Natl Acad Sci USA 100: 14731-14736
21. 1-ATPase from the thermophilic Bacillus PS3 is a symmetric trimer. Structure 5: 825-836
22. 1-ATPase is a highly efficient molecular motor that rotates with discrete 120 degree steps. Cell 93: 1117-1124
23. Yokoyama K, Oshima T, Yoshida M (1990) Thermus thermophilus membraneassociated ATPase. Indication of a eubacterial V-type ATPase. J Biol Chem 265: 21946-21950
24. Yokoyama K, Muneyuki E, Amano T, Mizutani S, Yoshida M, Ishida M, Ohkuma S (1998) V-ATPase of Thermus thermophilus is inactivated during ATP hydrolysis but can synthesize ATP. J Biol Chem 273: 20504-20510
25. +-ATPase/synthase from a thermophilic eubacterium, Thermus thermophilus. Subunit structure and operon. J Biol Chem 275: 13955-13961
26. Yokoyama K, Nagata K, Imamura H, Ohkuma S, Yoshida M, Tamakoshi M (2003) Subunit arrangement in V-ATPase from Thermus thermophilus. J Biol Chem 278: 42686-42691
27. Yoshida M, Muneyuki E, Hisabori T (2001) ATP synthase - a marvellous rotary engine of the cell. Nat Rev Mol Cell Biol 2: 669-677
28. Zhang Z, Zheng Y, Mazon H, Milgrom E, Kitagawa N, Kish-Trier E, Heck AJ, Kane PM, Wilkens S (2008) Structure of the yeast vacuolar ATPase. J Biol Chem 283: 35983-35995