Blood plasma reference material: A global resource for proteomic research

Journal of Proteome Research

Volumn 12, Issue 7, 2013, Pages 3087-3092

  Malm, Johan ^a   Danmyr, Pia ^b   Nilsson, Rolf ^a   Appelqvist, Roger ^b   Végvári, Ákos ^b   Marko Varga, György ^b  

^a LUND UNIVERSITY   (Sweden)

^b LUND UNIVERSITY   (Sweden)

Author keywords

blood plasma reference material; C HPP

Indexed keywords

C REACTIVE PROTEIN; HEPARIN; PROTEOME;

ADOLESCENT; ADULT; AGED; ARTICLE; BLOOD ANALYSIS; CHILD; CHROMOSOME HUMAN PROTEOME PROJECT; CONTROLLED STUDY; GROUPS BY AGE; HUMAN; INFANT; MAJOR CLINICAL STUDY; MIDDLE AGED; NEWBORN; NEWBORN CARE; PLASMA; PRESCHOOL CHILD; PRIORITY JOURNAL; PROTEOMICS; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; SCHOOL CHILD; STANDARD;

ADOLESCENT; ADULT; AGED; C-REACTIVE PROTEIN; FEMALE; HUMANS; INFANT, NEWBORN; MALE; MIDDLE AGED; PLASMA; PROTEOMICS; REFERENCE STANDARDS;

EID: 84879910249     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr400131r     Document Type: Article

References (20)

1. Sara, K.; Hurlbut, J. B. Research ethics: Treat donors as partners in biobank research Nature 2011, 478 (7369) 312-313
2. Marko-Varga, G.; Ogiwara, A.; Nishimura, T.; Kawamura, T.; Fujii, K.; Kawakami, T.; Kyono, Y.; Tu, H. K.; Anyoji, H.; Kanazawa, M.; Akimoto, S.; Hirano, T.; Tsuboi, M.; Nishio, K.; Hada, S.; Jiang, H.; Fukuoka, M.; Nakata, K.; Nishiwaki, Y.; Kunito, H.; Peers, I. S.; Harbron, C. G.; South, M. C.; Higenbottam, T.; Nyberg, F.; Kudoh, S.; Kato, H. Personalized medicine and proteomics: Lessons from non-small cell lung cancer J. Proteome Res. 2007, 6 (8) 2925-2935
3. Katsanis, S. H.; Javitt, G.; Hudson, K. A case study of personalized medicine Science 2008, 320 (5872) 53-54
4. Betsou, F.; Lehmann, S.; Ashton, G.; Barnes, M.; Benson, E. E.; Coppola, D.; DeSouza, Y.; Eliason, J.; Glazer, B.; Guadagni, F.; Harding, K.; Horsfall, D. J.; Kleeberger, C.; Nanni, U.; Prasad, A.; Shea, K.; Skubitz, A.; Somiari, S.; Gunter, E.; Biological, I. S. f.; Science, E. R. W. G. o. B. Standard preanalytical coding for biospecimens: defining the sample preanalytical code Cancer Epidemiol. Biomarkers Prev. 2010, 19 (4) 1004-1011
5. Tuck, M. K.; Chan, D. W.; Chia, D.; Godwin, A. K.; Grizzle, W. E.; Krueger, K. E.; Rom, W.; Sanda, M.; Sorbara, L.; Stass, S.; Wang, W.; Brenner, D. E. Standard operating procedures for serum and plasma collection: early detection research network consensus statement standard operating procedure integration working group J. Proteome Res. 2008, 8 (1) 113-117
6. Zimmerman, L. J.; Li, M.; Yarbrough, W. G.; Slebos, R. J. C.; Liebler, D. C. Global stability of plasma proteomes for mass spectrometry-based analyses Mol. Cell. Proteomics 2012, 11 (6 M111.014340
7. Insenser, M.; Martinez-Garcia, M.; Nieto, R. M.; San-Millan, J. L.; Escobar-Morreale, H. F. Impact of the storage temperature on human plasma proteomic analysis: implications for the use of human plasma collections in research Proteomics Clin. Appl. 2010, 4 (8-9) 739-744
8. Marko-Varga, G.; Végvári, á.; Welinder, C.; Lindberg, H.; Rezeli, M.; Edula, G.; Svensson, K. J.; Belting, M.; Laurell, T.; Fehniger, T. E. Standardization and utilization of Biobank resources in clinical protein science with examples of emerging applications J. Proteome Res. 2012, 11 (11) 5124-5134
9. Master, Z.; Nelson, E.; Murdoch, B.; Caulfield, T. Biobanks, consent and claims of consensus Nat. Methods 2012, 9 (9) 885-888
10. Simon, C. M.; L'Heureux, J.; Murray, J. C.; Winokur, P.; Weiner, G.; Newbury, E.; Shinkunas, L.; Zimmerman, B. Active choice but not too active: Public perspectives on biobank consent models Genet. Med. 2011, 13 (9) 821-831
11. Legrain, P.; Aebersold, R.; Archakov, A.; Bairoch, A.; Bala, K.; Beretta, L.; Bergeron, J.; Borchers, C. H.; Corthals, G. L.; Costello, C. E.; Deutsch, E. W.; Domon, B.; Hancock, W.; He, F. C.; Hochstrasser, D.; Marko-Varga, G.; Salekdeh, G. H.; Sechi, S.; Snyder, M.; Srivastava, S.; Uhlen, M.; Wu, C. H.; Yamamoto, T.; Paik, Y. K.; Omenn, G. S. The Human Proteome Project: current state and future direction Mol. Cell. Proteomics 2011, 10 (7 M111.009993
12. Hancock, W.; Omenn, G.; LeGrain, P.; Paik, Y.-K. Proteomics, Human Proteome Project, and chromosomes J. Proteome Res. 2010, 10 (1) 210-210
13. Paik, Y. K.; Jeong, S. K.; Omenn, G. S.; Uhlen, M.; Hanash, S.; Cho, S. Y.; Lee, H. J.; Na, K.; Choi, E. Y.; Yan, F. F.; Zhang, F.; Zhang, Y.; Snyder, M.; Cheng, Y.; Chen, R.; Marko-Varga, G.; Deutsch, E. W.; Kim, H.; Kwon, J. Y.; Aebersold, R.; Bairoch, A.; Taylor, A. D.; Kim, K. Y.; Lee, E. Y.; Hochstrasser, D.; Legrain, P.; Hancock, W. S. The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome Nat. Biotechnol. 2012, 30 (3) 221-223
14. Uhlén, M.; Oksvold, P.; Älgenäs, C.; Hamsten, C.; Fagerberg, L.; Klevebring, D.; Lundberg, E.; Odeberg, J.; Pontén, F.; Kondo, T.; Sivertsson, A. Antibody-based protein profiling of the human chromosome 21 Mol. Cell. Proteomics 2011, 11 (3) M111.013458
15. Omenn, G. S.; States, D. J.; Adamski, M.; Blackwell, T. W.; Menon, R.; Hermjakob, H.; Apweiler, R.; Haab, B. B.; Simpson, R. J.; Eddes, J. S.; Kapp, E. A.; Moritz, R. L.; Chan, D. W.; Rai, A. J.; Admon, A.; Aebersold, R.; Eng, J.; Hancock, W. S.; Hefta, S. A.; Meyer, H.; Paik, Y. K.; Yoo, J. S.; Ping, P. P.; Pounds, J.; Adkins, J.; Qian, X. H.; Wang, R.; Wasinger, V.; Wu, C. Y.; Zhao, X. H.; Zeng, R.; Archakov, A.; Tsugita, A.; Beer, I.; Pandey, A.; Pisano, M.; Andrews, P.; Tammen, H.; Speicher, D. W.; Hanash, S. M. Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database Proteomics 2005, 5 (13) 3226-3245
16. He, F. Human Liver Proteome Project: plan, progress, and perspectives Mol. Cell. Proteomics 2005, 4 (12) 1841-1848
17. Uhlen, M.; Ponten, F. Antibody-based proteomics for human tissue profiling Mol. Cell. Proteomics 2005, 4 (4) 384-393
18. Malm, J.; Végvári, á.; Rezeli, M.; Upton, P.; Danmyr, P.; Nilsson, R.; Steinfelder, E.; Marko-Varga, G. Large scale biobanking of blood-the importance of high density processing procedures Journal of Proteomics 2012, 76 (1) 116-124
19. LaBaer, J. Improving international research with clinical specimens: 5 achievable objectives J. Proteome Res. 2012, 11 (12) 5592-5601
20. Paik, Y. K.; Jeong, S. K.; Omenn, G. S.; Uhlen, M.; Beavis, R.; Hanash, S.; Lee, H. J.; Yan, F.; Zhang, Y.; Na, K.; Cho, S. Y.; Choi, E. Y.; Snyder, M.; Chen, Y.; Chen, R.; Marko-Varga, G.; Deutsch, E.; Kim, H.; Kwon, J. U.; Aebersold, R.; Bairoch, A.; Taylor, A.; Hochstrasser, D.; Legrain, P.; Hancock, W. A Chromosome-centric Human Proteome Project to characterize the set of proteins encoded in the genome Nat. Biotechnol. 2012, 30 (3) 221-223