Identification and Validation of Reference Genes for Gene Expression Analysis Using Quantitative PCR in Spodoptera litura (Lepidoptera: Noctuidae)

PLoS ONE

Volumn 8, Issue 7, 2013, Pages

  Lu, Yanhui ^a   Yuan, Miao ^a   Gao, Xiwu ^b   Kang, Tinghao ^a   Zhan, Sha ^a   Wan, Hu ^a   Li, Jianhong ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

INSECTICIDE;

ABIOTIC STRESS; ANIMAL TISSUE; ARGININE KINASE GENE; ARTICLE; BETA ACTIN GENE; BETA FTZ F1 GENE; CHINA; COMPUTER PROGRAM; CONTROLLED STUDY; DEVELOPMENTAL STAGE; ELONGATION FACTOR 1 ALPHA GENE; FEMALE; GENE EXPRESSION; GENE IDENTIFICATION; GENE LOCATION; GENOMIC INSTABILITY; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE GENE; HOUSEKEEPING GENE; LARVAL STAGE; MALE; NONHUMAN; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RIBOSOMAL PROTEIN L10 GENE; RIBOSOMAL PROTEIN S3 GENE; SPODOPTERA LITURA; TEMPERATURE STRESS; TISSUE DISTRIBUTION; UBIQUINOL CYTOCHROME C REDUCTASE GENE; VALIDATION STUDY;

ANIMALS; COMPUTATIONAL BIOLOGY; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENES, INSECT; MALE; MOLECULAR SEQUENCE DATA; REAL-TIME POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; SPODOPTERA; STRESS, PHYSIOLOGICAL;

LEPIDOPTERA; NOCTUIDAE; SPODOPTERA LITURA;

EID: 84879908944     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0068059     Document Type: Article

References (30)

1. Toutges MJ, Hartzer K, Lord J, Oppert B, (2010) Evaluation of reference genes for quantitative polymerase chain reaction across life cycle stages and tissue types of Tribolium castaneum. J Agric Food Chem 58: 8948-8951.
2. Shen GM, Jiang HB, Wang XN, Wang JJ, (2010) Evaluation of endogenous references for gene expression profiling in different tissues of the oriental fruit fly Bactrocera dorsalis (Diptera: Tephritidae). BMC Mol Biol 11: 76-85.
3. Ponton F, Chapuis M-P, Pernice M, Sword GA, Simpson SJ, (2011) Evaluation of potential reference genes for reverse transcription-qPCR studies of physiological responses in Drosophila melanogaster. J Insect Physiol 57: 840-850.
4. Schmittgen TD, Zakrajsek BA, (2000) Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. J Biochem Biophys Methods 46: 69-81.
5. Lee PD, Sladek R, Greenwood CM, Hudson TJ, (2002) Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies. Genome Res 12: 292-297.
6. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: 1-11.
7. Huggett J, Dheda K, Bustin S, Zumla A, (2005) Real-time RT-PCR normalization: strategies and considerations. Genes Immun 6: 279-284.
8. Thellin O, Zorzi W, Lakaye B, De Borman B, Coumans B, et al. (1999) Housekeeping genes as internal standards: use and limits. J Biotechnol 75: 291-295.
9. Holloway JD, (1989) The moths of Borneo: family Noctuidae, trifine subfamilies: Noctuinae, Heliothinae, Hadeninae, Acronictinae, Amphipyrinae, Agaristinae. Malayan Nat J 42: 57-226.
10. Qin H, Ye Z, Huang S, Ding J, Luo R, (2004) The correlations of the different host plants with preference level, life duration and survival rate of Spodoptera litura (Fabricius). Chin J Eco-Agric 12: 40-42.
11. Sree K, Sowjanya S, Sachdev B, Padmaja V, Bhatnagar RK, (2010) Electron spin resonance spectroscopic studies of free radical generation and tissue specific catalase gene expression in Spodoptera litura (Fab.) larvae treated with the mycotoxin, destruxin. Pestic Biochem Physiol 97: 168-176.
12. Chen H, Yin YP, Li Y, Mahmud MS, Wang ZK, (2012) Identification and analysis of genes differentially expressed in the Spodoptera litura fat body in response to the biocontrol fungus, Nomuraea rileyi. Comp Biochem Physiol Part B 163: 302-210.
13. Bear A, Simons A, Westerman E, Monteiro A, (2010) The Genetic, morphological, and physiological characterization of a dark larval cuticlemutation in the butterfly, Bicyclus anynana. PLoS ONE 5(7): e11563.
14. Shelton AM, Robertson JL, Tang JD, Perez C, Eigenbrode SD, et al. (1993) Resistance of diamondback moth (Lepidoptera: Yponomeutidae) to Bacillus thuringiensis subspecies in the field. J Econ Entomol 86: 697-705.
15. Liang P, Gao XW, Zheng BZ, (2003) Genetic basis of resistance and studies on cross-resistance in a population of diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae). Pest Manag Sci 59: 1232-1236.
16. Tu YG, Zeng JH, (2010) A method for artificial rearing of common cutworm, Spodoptera litura. Acta Agricul Jiangxi 22: 87-88.
17. Paim RM, Pereira MH, Ponzio RD, Rodrigues JO, Guarneri AA, et al. (2012) Validation of reference genes for expression analysis in the salivary gland and the intestine of Rhodnius prolixus (Hemiptera, Reduviidae) under different experimental conditions by quantitative real-time PCR. BMC Research Notes 5: 128-138.
18. Horňáková D, Matoušková P, Kindl J, Valterová I, Pichová I, (2010) Selection of reference genes for real-time PCR polymerase chain reaction analysis in tissues from Bombus terrestris and Bombus lucorum of different ages. Anal Biochem 397: 118-120.
19. Lu Y, Pang Y-P, Park Y, Gao X, Yao J, et al. (2012) Genome organization, phylogenies, expression patterns, and three-dimensional protein models of two acetylcholinesterase genes from the red flour beetle. PLoS ONE 7(2): e32288.
20. Giulietti A, Overbergh L, Valckx D, Decallonne B, Bouillon R, et al. (2001) An overview of real-time quantitative PCR: Applications to quantify cytokine gene expression. Methods 25: 386-401.
21. Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP, (2004) Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Biotechnol Lett 26: 509-515.
22. Radonic A, Thulke S, Mackay IM, Landt O, Siegert W, et al. (2004) Guideline to reference gene selection for quantitative real-time PCR. Biochem Biophys Res Commun 313: 856-862.
23. Walker NJ, (2002) A technique whose time has come. Science 296: 557-559.
24. Andersen CL, Ledet-Jensen J, Ørntoft T, (2004) Normalization of real-time quantitative RT-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64: 5245-5250.
25. Sun W, Jin Y, He L, Lu WC, Li M (2010) Suitable reference gene selection for the different strains and developmental stages of the carmine spider mite, Tetranychus cinnabarinus, using quantitative real-time PCR. J Insect Sci 10: 208, available online: insectscience.org/10.208.
26. Scharlaken B, de Graaf DC, Goossens K, Brunain M, Peelman LJ, et al. (2008) Reference gene selection for insect expression studies using quantitative real-time PCR: The honeybee, Apis mellifera, head after a bacterial challenge. J Insect Sci 8: 33, available online: insectscience.org/8.33.
27. Majerowicz D, Alves-Bezerra M, Logullo R, Fonseca-de-Souza AL, Meyer-Fernandes JR, et al. (2011) Looking for reference genes for real-time quantitative PCR experiments in Rhodnius prolixus (Hemiptera: Reduviidae) Insect Mol Biol. 20: 713-722.
28. Mamidala P, Rajarapu SP, Jones SC, Mittapalli O, (2011) Identification and validation of reference genes for quantitative real-time polymerse chain reaction in Cimex lectularius. J Med Entomol 48: 947-951.
29. Van Hiel MB, Van Wielendaele P, Temmerman L, Van Soest S, Vuerinckx K, et al. (2009) Identification and validation of housekeeping genes in brains of the desert locust Schistocerca gregaria under different developmental conditions. BMC Mol Biol 10: 56-65.
30. Chapuis MP, Tohidi-Estahani D, Dodgson T, Blondin L, Ponton F, et al. (2011) Assessment and validation of a suite of reverse transcription-quantitative PCR reference genes for analyses of density-dependent behavioral plasticity in the Australian plague locust. BMC Genomics 12: 7.