메뉴 건너뛰기




Volumn 45, Issue 1, 2013, Pages

Estimation of genetic variance for macro- and micro-environmental sensitivity using double hierarchical generalized linear models

Author keywords

[No Author keywords available]

Indexed keywords

AKAIKE INFORMATION CRITERION; DATA SET; ENVIRONMENTAL FACTOR; GENETIC VARIATION; NUMERICAL MODEL; PRECISION; REACTION NORM;

EID: 84879828044     PISSN: 0999193X     EISSN: 12979686     Source Type: Journal    
DOI: 10.1186/1297-9686-45-23     Document Type: Article
Times cited : (50)

References (51)
  • 2
    • 0037146837 scopus 로고    scopus 로고
    • Selection and phenotypic plasticity in evolutionary biology and animal breeding
    • DOI 10.1016/S0301-6226(02)00096-9, PII S0301622602000969
    • Selection and phenotypic plasticity in evolutionary biology and animal breeding. De Jong G, Bijma P, Livest Prod Sci 2002 78 195 214 10.1016/S0301-6226(02)00096-9 (Pubitemid 35431682)
    • (2002) Livestock Production Science , vol.78 , Issue.3 , pp. 195-214
    • De Jong, G.1    Bijma, P.2
  • 3
    • 34249081199 scopus 로고    scopus 로고
    • Prediction of breeding values and selection responses with genetic heterogeneity of environmental variance
    • DOI 10.1534/genetics.106.063743
    • Prediction of breeding values and selection responses with genetic heterogeneity of environmental variance. Mulder HA, Bijma P, Hill WG, Genetics 2007 175 1895 1910 10.1534/genetics.106.063743 17277375 (Pubitemid 46789971)
    • (2007) Genetics , vol.175 , Issue.4 , pp. 1895-1910
    • Mulder, H.A.1    Bijma, P.2    Hill, W.G.3
  • 4
    • 77949844022 scopus 로고    scopus 로고
    • Factor-analytic models for genotype x environment type problems and structured covariance matrices
    • 10.1186/1297-9686-41-21 19284520
    • Factor-analytic models for genotype x environment type problems and structured covariance matrices. Meyer K, Genet Sel Evol 2009 41 21 10.1186/1297-9686-41-21 19284520
    • (2009) Genet Sel Evol , vol.41 , pp. 21
    • Meyer, K.1
  • 5
    • 42149153862 scopus 로고    scopus 로고
    • BLUP for phenotypic selection in plant breeding and variety testing
    • DOI 10.1007/s10681-007-9449-8
    • BLUP for phenotypic selection in plant breeding and variety testing. Piepho HP, Mohring J, Melchinger AE, Buchse A, Euphytica 2008 161 209 228 10.1007/s10681-007-9449-8 (Pubitemid 351533935)
    • (2008) Euphytica , vol.161 , Issue.1-2 , pp. 209-228
    • Piepho, H.P.1    Mohring, J.2    Melchinger, A.E.3    Buchse, A.4
  • 6
    • 0036843637 scopus 로고    scopus 로고
    • Selection experiments and the study of phenotypic plasticity
    • DOI 10.1046/j.1420-9101.2002.00468.x
    • Selection experiments and the study of phenotypic plasticity. Scheiner SM, J Evol Biol 2002 15 889 898 10.1046/j.1420-9101.2002.00468.x (Pubitemid 35326121)
    • (2002) Journal of Evolutionary Biology , vol.15 , Issue.6 , pp. 889-898
    • Scheiner, S.M.1
  • 8
    • 1542543998 scopus 로고    scopus 로고
    • Estimation of environmental sensitivity of genetic merit for milk production traits using a random regression model
    • Estimation of environmental sensitivity of genetic merit for milk production traits using a random regression model. Calus MPL, Veerkamp RF, J Dairy Sci 2003 86 3756 3764 10.3168/jds.S0022-0302(03)73982-4 14672207 (Pubitemid 39001240)
    • (2003) Journal of Dairy Science , vol.86 , Issue.11 , pp. 3756-3764
    • Calus, M.P.L.1    Veerkamp, R.F.2
  • 9
    • 84855379063 scopus 로고    scopus 로고
    • Exploring breeding opportunities for reduced thermal sensitivity of feed intake in the lactating sow
    • 10.2527/jas.2011-4021 21788430
    • Exploring breeding opportunities for reduced thermal sensitivity of feed intake in the lactating sow. Bergsma R, Hermesch S, J Anim Sci 2012 90 85 98 10.2527/jas.2011-4021 21788430
    • (2012) J Anim Sci , vol.90 , pp. 85-98
    • Bergsma, R.1    Hermesch, S.2
  • 10
    • 57649181464 scopus 로고
    • Evolutionary significance of phenotypic plasticity in plants
    • Evolutionary significance of phenotypic plasticity in plants. Bradshaw AD, Adv Genet 1965 13 115 155
    • (1965) Adv Genet , vol.13 , pp. 115-155
    • Bradshaw, A.D.1
  • 11
    • 0027333437 scopus 로고
    • Genetics and evolution of phenotypic plasticity
    • 10.1146/annurev.es.24.110193.000343
    • Genetics and evolution of phenotypic plasticity. Scheiner SM, Annu Rev Ecol Syst 1993 24 35 68 10.1146/annurev.es.24.110193.000343
    • (1993) Annu Rev Ecol Syst , vol.24 , pp. 35-68
    • Scheiner, S.M.1
  • 12
    • 26844571576 scopus 로고    scopus 로고
    • Evolution: Selection on heritable phenotypic plasticity in a wild bird population
    • DOI 10.1126/science.1117004
    • Selection on heritable phenotypic plasticity in a wild bird population. Nussey DH, Postma E, Gienapp P, Visser ME, Science 2005 310 304 306 10.1126/science.1117004 16224020 (Pubitemid 41457194)
    • (2005) Science , vol.310 , Issue.5746 , pp. 304-306
    • Nussey, D.H.1    Postma, E.2    Gienapp, P.3    Visser, M.E.4
  • 13
    • 0028188934 scopus 로고
    • Reaction norms and the genetic basis of phenotypic plasticity in the wing pattern of the butterfly Bicyclus anynana
    • 10.1046/j.1420-9101.1994.7060665.x
    • Reaction norms and the genetic basis of phenotypic plasticity in the wing pattern of the butterfly Bicyclus anynana. Windig JJ, J Evol Biol 1994 7 665 695 10.1046/j.1420-9101.1994.7060665.x
    • (1994) J Evol Biol , vol.7 , pp. 665-695
    • Windig, J.J.1
  • 14
    • 51149203927 scopus 로고
    • Canalization of development and the inheritance of acquired characters
    • 10.1038/150563a0
    • Canalization of development and the inheritance of acquired characters. Waddington CH, Nature 1942 150 563 565 10.1038/150563a0
    • (1942) Nature , vol.150 , pp. 563-565
    • Waddington, C.H.1
  • 15
    • 25144508573 scopus 로고    scopus 로고
    • The evolutionary genetics of canalization
    • DOI 10.1086/432265
    • The evolutionary genetics of canalization. Flatt T, Q Rev Biol 2005 80 287 316 10.1086/432265 16250465 (Pubitemid 41339252)
    • (2005) Quarterly Review of Biology , vol.80 , Issue.3 , pp. 287-316
    • Flatt, T.1
  • 16
    • 0035479444 scopus 로고    scopus 로고
    • Mapping phenotypes: Canalization, plasticity and developmental stability
    • DOI 10.1016/S0169-5347(01)02266-2, PII S0169534701022662
    • Mapping phenotypes: canalization, plasticity and developmental stability. Debat V, David P, Trends Ecol Evol 2001 16 555 561 10.1016/S0169-5347(01)02266- 2 (Pubitemid 32831577)
    • (2001) Trends in Ecology and Evolution , vol.16 , Issue.10 , pp. 555-561
    • Debat, V.1    David, P.2
  • 17
    • 1842434304 scopus 로고    scopus 로고
    • Normal linear models with genetically structured residual variance heterogeneity: A case study
    • DOI 10.1017/S0016672303006426
    • Normal linear models with genetically structured residual variance heterogeneity: a case study. Sorensen D, Waagepetersen R, Genet Res 2003 82 207 222 10.1017/S0016672303006426 15134199 (Pubitemid 38418171)
    • (2003) Genetical Research , vol.82 , Issue.3 , pp. 207-222
    • Sorensen, D.1    Waagepetersen, R.2
  • 18
    • 61849120056 scopus 로고    scopus 로고
    • Selection for environmental variation: A statistical analysis and power calculations to detect reponse
    • 10.1534/genetics.108.091678 18832357
    • Selection for environmental variation: a statistical analysis and power calculations to detect reponse. Ibanez-Escriche N, Sorensen D, Waagepetersen R, Blasco A, Genetics 2008 180 2209 2226 10.1534/genetics.108.091678 18832357
    • (2008) Genetics , vol.180 , pp. 2209-2226
    • Ibanez-Escriche, N.1    Sorensen, D.2    Waagepetersen, R.3    Blasco, A.4
  • 19
    • 84858142433 scopus 로고    scopus 로고
    • Genetic heterogeneity of residual variance: Estimation of variance components using double hierarchical generalized linear models
    • 10.1186/1297-9686-42-8 20302616
    • Genetic heterogeneity of residual variance: estimation of variance components using double hierarchical generalized linear models. Rönnegård L, Felleki M, Fikse F, Mulder HA, Strandberg E, Genet Sel Evol 2010 42 8 10.1186/1297-9686-42-8 20302616
    • (2010) Genet Sel Evol , vol.42 , pp. 8
    • Rönnegård, L.1    Felleki, M.2    Fikse, F.3    Mulder, H.A.4    Strandberg, E.5
  • 20
    • 79957468856 scopus 로고    scopus 로고
    • Genetic analysis of environmental variation
    • 10.1017/S0016672310000546
    • Genetic analysis of environmental variation. Hill WG, Mulder HA, Genet Res 2010 92 381 395 10.1017/S0016672310000546
    • (2010) Genet Res , vol.92 , pp. 381-395
    • Hill, W.G.1    Mulder, H.A.2
  • 22
    • 0015613308 scopus 로고
    • The assessment and specificity of environmental and genotype- environmental components of variability
    • 10.1038/hdy.1973.16 4522095
    • The assessment and specificity of environmental and genotype- environmental components of variability. Perkins JM, Jinks JL, Heredity 1973 30 111 126 10.1038/hdy.1973.16 4522095
    • (1973) Heredity , vol.30 , pp. 111-126
    • Perkins, J.M.1    Jinks, J.L.2
  • 23
    • 0031019997 scopus 로고    scopus 로고
    • Genetic control of macro- and micro-environmental sensitivities in Populus
    • DOI 10.1007/s001220050388
    • Genetic control of macro- and micro-environmental sensitivities in Populus. Wu RL, Theor Appl Genet 1997 94 104 114 10.1007/s001220050388 19352752 (Pubitemid 27108798)
    • (1997) Theoretical and Applied Genetics , vol.94 , Issue.1 , pp. 104-114
    • Wu, R.L.1
  • 24
    • 0031960848 scopus 로고    scopus 로고
    • Nonlinear genotypic response to macro- and microenvironments
    • DOI 10.1007/s001220050787
    • Nonlinear genotypic response to macro- and micro-environments. Wu RL, O'Malley DM, Theor Appl Genet 1998 96 669 675 10.1007/s001220050787 (Pubitemid 28229004)
    • (1998) Theoretical and Applied Genetics , vol.96 , Issue.5 , pp. 669-675
    • Wu, R.L.1    O'Malley, D.M.2
  • 25
    • 5144221069 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars
    • DOI 10.1534/genetics.104.026831
    • Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Kraakman ATW, Niks RE, Van den Berg PMMM, Stam P, Van Eeuwijk FA, Genetics 2004 168 435 446 10.1534/genetics.104.026831 15454555 (Pubitemid 39346607)
    • (2004) Genetics , vol.168 , Issue.1 , pp. 435-446
    • Kraakman, A.T.W.1    Niks, R.E.2    Van Den Berg, P.M.M.M.3    Stam, P.4    Van Eeuwijk, F.A.5
  • 26
    • 0028259160 scopus 로고
    • Developmental noise, phenotypic plasticity, and allozyme heterozygosity in Daphnia
    • 10.2307/2410259
    • Developmental noise, phenotypic plasticity, and allozyme heterozygosity in Daphnia. Yampolsky LY, Scheiner SM, Evolution 1994 48 1715 1722 10.2307/2410259
    • (1994) Evolution , vol.48 , pp. 1715-1722
    • Yampolsky, L.Y.1    Scheiner, S.M.2
  • 27
    • 84993647981 scopus 로고
    • The genetics of phenotypic plasticity. IV. Chromosomal localization
    • 10.1046/j.1420-9101.1992.5010109.x
    • The genetics of phenotypic plasticity. IV. Chromosomal localization. Weber SL, Scheiner SM, J Evol Biol 1992 5 109 120 10.1046/j.1420-9101.1992. 5010109.x
    • (1992) J Evol Biol , vol.5 , pp. 109-120
    • Weber, S.L.1    Scheiner, S.M.2
  • 28
    • 84993917344 scopus 로고
    • The genetics of phenotypic plasticity. III. Genetic correlations and fluctuating asymmetries
    • 10.1046/j.1420-9101.1991.4010051.x
    • The genetics of phenotypic plasticity. III. Genetic correlations and fluctuating asymmetries. Scheiner SM, Caplan RL, Lyman RF, J Evol Biol 1991 4 51 68 10.1046/j.1420-9101.1991.4010051.x
    • (1991) J Evol Biol , vol.4 , pp. 51-68
    • Scheiner, S.M.1    Caplan, R.L.2    Lyman, R.F.3
  • 29
    • 0031770625 scopus 로고    scopus 로고
    • Prediction of the response tea selection for canalisation of a continuous trait in animal breeding
    • Prediction of the response to a selection for canalisation of a continuous trait in animal breeding. SanCristobal-Gaudy M, Elsen JM, Bodin L, Chevalet C, Genet Sel Evol 1998 30 423 451 10.1186/1297-9686-30-5-423 (Pubitemid 28559602)
    • (1998) Genetics Selection Evolution , vol.30 , Issue.5 , pp. 423-451
    • Sancristobal-Gaudy, M.1    Elsen, J.-M.2    Bodin, L.3    Chevalet, C.4
  • 30
    • 84948783167 scopus 로고
    • The hat matrix in regression and ANOVA
    • The hat matrix in regression and ANOVA. Hoaglin DC, Welsh RE, Am Stat 1978 32 17 22
    • (1978) Am Stat , vol.32 , pp. 17-22
    • Hoaglin, D.C.1    Welsh, R.E.2
  • 31
    • 84873457053 scopus 로고    scopus 로고
    • Estimation of breeding values for mean and dispersion, their variance and correlation using double hierarchical generalized linear models
    • 10.1017/S0016672312000766
    • Estimation of breeding values for mean and dispersion, their variance and correlation using double hierarchical generalized linear models. Felleki M, Lee D, Lee Y, Gilmour AR, Ronnegard L, Genet Res 2012 94 307 317 10.1017/S0016672312000766
    • (2012) Genet Res , vol.94 , pp. 307-317
    • Felleki, M.1    Lee, D.2    Lee, Y.3    Gilmour, A.R.4    Ronnegard, L.5
  • 32
    • 70450237683 scopus 로고    scopus 로고
    • Estimation of genetic variation in residual variance in female and male broiler chickens
    • 10.1017/S1751731109990668 22443551
    • Estimation of genetic variation in residual variance in female and male broiler chickens. Mulder HA, Hill WG, Vereijken A, Veerkamp RF, Animal 2009 3 1673 1680 10.1017/S1751731109990668 22443551
    • (2009) Animal , vol.3 , pp. 1673-1680
    • Mulder, H.A.1    Hill, W.G.2    Vereijken, A.3    Veerkamp, R.F.4
  • 33
    • 79956268459 scopus 로고    scopus 로고
    • Simultaneous estimation of genotype by environment interaction accounting for discrete and continuous environmental descriptors in Irish dairy cattle
    • 10.3168/jds.2010-3725 21605783
    • Simultaneous estimation of genotype by environment interaction accounting for discrete and continuous environmental descriptors in Irish dairy cattle. Windig JJ, Mulder HA, Bohthe-Wilhelmus DI, Veerkamp RF, J Dairy Sci 2011 94 3137 3147 10.3168/jds.2010-3725 21605783
    • (2011) J Dairy Sci , vol.94 , pp. 3137-3147
    • Windig, J.J.1    Mulder, H.A.2    Bohthe-Wilhelmus, D.I.3    Veerkamp, R.F.4
  • 36
    • 4644231428 scopus 로고    scopus 로고
    • Effects of data structure on the estimation of covariance functions to describe genotype by environment interactions in a reaction norm model
    • DOI 10.1051/gse:2004013
    • Effects of data structure on the estimation of covariance functions to describe genotype by environment interactions in a reaction norm model. Calus MPL, Bijma P, Veerkamp RF, Genet Sel Evol 2004 36 489 507 10.1186/1297-9686-36- 5-489 15339629 (Pubitemid 39270600)
    • (2004) Genetics Selection Evolution , vol.36 , Issue.5 , pp. 489-507
    • Calus, M.P.L.1    Bijma, P.2    Veerkamp, R.F.3
  • 37
    • 84875517825 scopus 로고    scopus 로고
    • Variance component and breeding value estimation for genetic heterogeneity of residual variance in Swedish Holstein dairy cattle
    • 10.3168/jds.2012-6198 23415533
    • Variance component and breeding value estimation for genetic heterogeneity of residual variance in Swedish Holstein dairy cattle. Rönnegård L, Felleki M, Fikse WF, Mulder HA, Strandberg E, J Dairy Sci 2013 96 2627 2636 10.3168/jds.2012-6198 23415533
    • (2013) J Dairy Sci , vol.96 , pp. 2627-2636
    • Rönnegård, L.1    Felleki, M.2    Fikse, W.F.3    Mulder, H.A.4    Strandberg, E.5
  • 38
    • 84881179922 scopus 로고    scopus 로고
    • http: //www.icar.org /pages /recording-guidelines.htm, Icar
    • ICAR, International agreement of recording practices 2012 http://www.icar.org/pages/recording-guidelines.htm
    • (2012) International Agreement of Recording Practices
  • 39
    • 34249056056 scopus 로고    scopus 로고
    • Heterogeneity of genetic and environmental variance of quantitative traits
    • Heterogeneity of genetic and environmental variance of quantitative traits. Hill WG, J Ind Soc Agric Stat 2004 57 49 63
    • (2004) J Ind Soc Agric Stat , vol.57 , pp. 49-63
    • Hill, W.G.1
  • 41
    • 77949849958 scopus 로고    scopus 로고
    • Reducing the bias of estimates genotype by environment interactions in random regression sire models
    • 10.1186/1297-9686-41-30 19296859
    • Reducing the bias of estimates genotype by environment interactions in random regression sire models. Lillehammer M, Odegard J, Meuwissen THE, Genet Sel Evol 2009 41 30 10.1186/1297-9686-41-30 19296859
    • (2009) Genet Sel Evol , vol.41 , pp. 30
    • Lillehammer, M.1    Odegard, J.2    Meuwissen, T.H.E.3
  • 42
    • 12144260064 scopus 로고    scopus 로고
    • Influence of herd environment on health and fertility and their relationship with milk production
    • Influence of herd environment on health and fertility and their relationship with milk production. Windig JJ, Calus MPL, Veerkamp RF, J Dairy Sci 2005 88 335 347 10.3168/jds.S0022-0302(05)72693-X 15591398 (Pubitemid 40102974)
    • (2005) Journal of Dairy Science , vol.88 , Issue.1 , pp. 335-347
    • Windig, J.J.1    Calus, M.P.L.2    Veerkamp, R.F.3
  • 43
    • 33745834366 scopus 로고    scopus 로고
    • Bayesian analysis of the linear reaction norm model with unknown covariates
    • DOI 10.2527/jas.2005-517
    • Bayesian analysis of the linear reaction norm model with unknown covariates. Su G, Madsen P, Lund MS, Sorensen D, Korsgaard IR, Jensen J, J Anim Sci 2006 84 1651 1657 10.2527/jas.2005-517 16775048 (Pubitemid 44033953)
    • (2006) Journal of Animal Science , vol.84 , Issue.7 , pp. 1651-1657
    • Su, G.1    Madsen, P.2    Lund, M.S.3    Sorensen, D.4    Korsgaard, I.R.5    Jensen, J.6
  • 44
    • 0000175262 scopus 로고
    • The sampling variance of the genetic correlation coefficient
    • 10.2307/2527750
    • The sampling variance of the genetic correlation coefficient. Robertson A, Biometrics 1959 15 469 485 10.2307/2527750
    • (1959) Biometrics , vol.15 , pp. 469-485
    • Robertson, A.1
  • 46
    • 34249923147 scopus 로고
    • Expected utility maximization and selection of stable plant cultivars
    • Expected utility maximization and selection of stable plant cultivars. Eskridge KM, Johnson BE, Theor Appl Genet 1991 81 825 832
    • (1991) Theor Appl Genet , vol.81 , pp. 825-832
    • Eskridge, K.M.1    Johnson, B.E.2
  • 47
    • 37349042310 scopus 로고    scopus 로고
    • Selection for uniformity in livestock by exploiting genetic heterogeneity of residual variance
    • DOI 10.1051/gse:2007034
    • Selection for uniformity in livestock by exploiting genetic heterogeneity of residual variance. Mulder HA, Bijma P, Hill WG, Genet Sel Evol 2008 40 37 59 18096114 (Pubitemid 350308264)
    • (2008) Genetics Selection Evolution , vol.40 , Issue.1 , pp. 37-59
    • Mulder, H.A.1    Bijma, P.2    Hill, W.G.3
  • 48
    • 57649139188 scopus 로고    scopus 로고
    • Genetic variation and quantitative trait loci associated with developmental stability and the environmental correlation between traits in maize
    • 10.1017/S0016672308009762
    • Genetic variation and quantitative trait loci associated with developmental stability and the environmental correlation between traits in maize. Ordas B, Malvar RA, Hill WG, Genet Res 2008 90 385 395 10.1017/S0016672308009762
    • (2008) Genet Res , vol.90 , pp. 385-395
    • Ordas, B.1    Malvar, R.A.2    Hill, W.G.3
  • 49
    • 84875921418 scopus 로고    scopus 로고
    • Phenotype uniformity in combined-stress environments has a different genetic architecture than in single-stress treatments
    • 22645526
    • Phenotype uniformity in combined-stress environments has a different genetic architecture than in single-stress treatments. Makumburage GB, Stapleton AE, Front Plant Sci 2011 2 12 22645526
    • (2011) Front Plant Sci , vol.2 , pp. 12
    • Makumburage, G.B.1    Stapleton, A.E.2
  • 50
    • 84875963400 scopus 로고    scopus 로고
    • The quantitative genetics of phenotypic error or uniformity
    • 22303354
    • The quantitative genetics of phenotypic error or uniformity. Kliebenstein DJ, Front Genet 2011 2 59 22303354
    • (2011) Front Genet , vol.2 , pp. 59
    • Kliebenstein, D.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.